CuGenDBv2

Gene ID	Pay0019231
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	S4 RNA-binding domain-containing protein
Genome location	chr06:9312224..9328557
RNA-Seq Expression	Pay0019231
Synteny	Pay0019231
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

4.5e-153

88.2

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Query:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA T +IGALWSLR A+Q SSFR PL +NL ++ FHE RF   PSSPLG SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDII+QEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_004146247.1 uncharacterized protein LOC101221944 [Cucumis sativus]

9.6e-164

95.3

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Query:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAAT T+I ALWSLR A+QFSSFRRPL +NLNRL F+E RFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI++QEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

XP_008456024.1 PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo]

1.9e-172

100

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Query:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

XP_023554595.1 uncharacterized protein LOC111811761 isoform X1 [Cucurbita pepo subsp. pepo]

1.3e-152

88.51

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Query:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA T +IGALWSLR A+  SSFR PL VNL+++ FHE RF   PSSPLG SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDI+SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDII+QEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_038899605.1 putative RNA-binding protein YlmH [Benincasa hispida]

8.1e-155

91.17

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Query:  TTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTP
        T+IGA WSLR A+Q SSFR PL VNLN+L FHE RF   PSSPLG+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRR VLHTNFLTP
Subjt:  TTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELV
        PVVKES+LA+QKLADVKAIAQGGYPEAERCRISVGH+DEL SDPDI+SALSITGNF FHPCSHGDFLG+ILGTGIAREKLGDII+QEE GAQVV+VPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELV

Query:  DFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE
        DFL SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE
Subjt:  DFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE

Query:  INSTKKGKFAVELIRYV
        INSTKKGKFAVELIRYV
Subjt:  INSTKKGKFAVELIRYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

4.6e-164

95.3

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Query:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAAT T+I ALWSLR A+QFSSFRRPL +NLNRL F+E RFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI++QEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

A0A1S3C3I2 putative RNA-binding protein YlmH isoform X2

9.3e-173

100

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Query:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

1.4e-152

90.22

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Query:  TTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTP
        T+IGALWSLR A+Q SSFR PL +NL+   FH+ RF   PSSP G+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTP
Subjt:  TTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELV
        PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDII+Q E GAQVV+VPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELV

Query:  DFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE
        DFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLKIGE
Subjt:  DFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE

Query:  INSTKKGKFAVELIRYV
        INSTKKGKF+VELIRYV
Subjt:  INSTKKGKFAVELIRYV

A0A6J1FU11 uncharacterized protein LOC111446880 isoform X2

4.1e-152

87.89

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Query:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA T +IGALWSLR A++ SSFR PL VNL ++ FHE RF   PSSPLG SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPD++SALSITGNF F  C+HGDFLG+ILGTGIAREKLGDII+QEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

8.2e-153

88.51

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Query:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA T +IGALWSLR A+Q SS R PL VNL+++ FHE RF   PSSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGH+DELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDII+QEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSL KVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD ISSGDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

5.2e-19

30.67

Show/hide

Query:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGA
        T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A ++     F    H   LG+++G G+ R+K GDI+   ET  
Subjt:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGA

Query:  QVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVS
        Q+++  +  DF+ + L + G   VS  +I L+ L       +      +SLR+DA+ ++  + SR K   L+ +G V+VNW  +     I+  GD++S+ 
Subjt:  QVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVS

Query:  GKGRLKIGEI-NSTKKGKFAVELIR
        G GR  + +I   TKK K+ V   R
Subjt:  GKGRLKIGEI-NSTKKGKFAVELIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

2.5e-117

67.82

Show/hide

Query:  TTIGALW-SLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTP
        T++   W  LR+A +  +    L  N   L  + +   S PL  S +  C   +A+KGD+D LL GVGD+ V  +VKQIL MA+R+ S+REVLHT+FLTP
Subjt:  TTIGALW-SLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELV
        P+VKES+  ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REKLGDI+IQEE GAQV+IVPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELV

Query:  DFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE
        DF++++L KVGNV V+C++IPL ALEYEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  +TKNGTI+KTGD+VSVSGKGRLKIGE
Subjt:  DFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE

Query:  INSTKKGKFAVELIRYV
        IN TKKGKFAVE+IRY+
Subjt:  INSTKKGKFAVELIRYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGCAACGACAACGACCATTGGAGCTCTATGGAGTTTAAGAATAGCATCTCAGTTTTCCAGTTTCCGAAGACCCCTTCCCGTTAATCTCAATAGGCTCTACTTTCA
CGAGACCCGGTTTCCCTCTTCTCCTCTGGGCACCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTG
TTATTGTAGACGTGAAACAAATTCTTGTGATGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTA
GCTATTCAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCACTCAGATGAACTAACAAGTGATCCAGA
CATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTG
ATATCATAATCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACG
AGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTTTAGCAAGTGCTGGATTCAAGATTTC
ACGATCTAAACTAGTGGATTTAATCAGTAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGGTGATATTGTTTCTGTTAGTG
GCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTATCAGATATGTGTAA

mRNA sequence

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GTTGGTCCTTCCTTTTATATATTTTTGTCTTCGGCTGTGTGTTTTATTTTCTTGTGAGCCCATTTTTAGTTTTTTTATAGTCATTACTATGTCATTGTTTAAATTTAAAA
GAGGATGATTGTTATATTAACCATCAAGTTTGGAACGGTTGCGCGTTGATACTCAGTGACCCATGGCCGCAACGACAACGACCATTGGAGCTCTATGGAGTTTAAGAATA
GCATCTCAGTTTTCCAGTTTCCGAAGACCCCTTCCCGTTAATCTCAATAGGCTCTACTTTCACGAGACCCGGTTTCCCTCTTCTCCTCTGGGCACCTCAGGAATATGCCA
ATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACAAATTCTTGTGATGGCTAAACGTTCATTAT
CAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATTCAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATAC
CCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCACTCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTG
TTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATAATCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAG
AACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACA
TTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTTTAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAGTAGCGGGGATGTTCGTGTCAA
TTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGGTGATATTGTTTCTGTTAGTGGCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAA
AATTTGCTGTTGAGCTTATCAGATATGTGTAAGCTCTAGAGATACTGTCAGTTCATAAGACGTCACAGGAGCCTCTTTGTCGGGGTGAAATCAGGATTGTTTCCTTAGGA
ATAACTGAAGTAAGTCAACATGACATTAATCTGATTGTATATGTGAAAATACAAACACCCATTCATCCATTCTTAAAATTTTCATCGGGAAAATCTGTCTCAGCATTTCA
ATGCCAGTGCTTTATAGTTCTTTTGTTTCTGGTTGTGTTGCCTTCTTTTCTGGAATGAATTCGTTCATACTAATGTTGTCAAAGGAGGGAATTTAGGCGCAAAGTTATAG
CTTCACTGTAACTATTTGTTTATTCAATGATTTACCTCAACTCCATCCCC

Protein sequence

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MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESML
AIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCT
RIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV

Pay0019231 (gene) of Melon (Payzawat) v1 genome