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Pay0019492 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0019492
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionDNA excision repair protein ERCC-1
Genome locationchr06:9211033..9215112
RNA-Seq ExpressionPay0019492
SyntenyPay0019492
Gene Ontology termsGO:0000710 - meiotic mismatch repair (biological process)
GO:0006296 - nucleotide-excision repair, DNA incision, 5'-to lesion (biological process)
GO:0006312 - mitotic recombination (biological process)
GO:0070914 - UV-damage excision repair (biological process)
GO:0000110 - nucleotide-excision repair factor 1 complex (cellular component)
GO:0070522 - ERCC4-ERCC1 complex (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004579 - ERCC1/RAD10/SWI10 family
IPR011335 - Restriction endonuclease type II-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02347.1 DNA excision repair protein ERCC-1 [Cucumis melo var. makuwa]2.9e-1891.07Show/hide
Query:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +SVSSSVSRNAILVSNRQK NPLLKHIRNVRW FADVVPDYLLGQSSCALYL L Y
Subjt:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

XP_004138378.1 DNA excision repair protein ERCC-1 isoform X1 [Cucumis sativus]2.9e-1891.07Show/hide
Query:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +SVSSSVSRNAILVSNRQK NPLLKHIRNVRW FADVVPDYLLGQSSCALYL L Y
Subjt:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

XP_008463078.1 PREDICTED: DNA excision repair protein ERCC-1 [Cucumis melo]2.9e-1891.07Show/hide
Query:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +SVSSSVSRNAILVSNRQK NPLLKHIRNVRW FADVVPDYLLGQSSCALYL L Y
Subjt:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

XP_011656460.1 DNA excision repair protein ERCC-1 isoform X2 [Cucumis sativus]2.9e-1891.07Show/hide
Query:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +SVSSSVSRNAILVSNRQK NPLLKHIRNVRW FADVVPDYLLGQSSCALYL L Y
Subjt:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

XP_011656461.1 DNA excision repair protein ERCC-1 isoform X3 [Cucumis sativus]2.9e-1891.07Show/hide
Query:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +SVSSSVSRNAILVSNRQK NPLLKHIRNVRW FADVVPDYLLGQSSCALYL L Y
Subjt:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

TrEMBL top hitse value%identityAlignment
A0A0A0KDK6 Uncharacterized protein1.4e-1891.07Show/hide
Query:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +SVSSSVSRNAILVSNRQK NPLLKHIRNVRW FADVVPDYLLGQSSCALYL L Y
Subjt:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

A0A1S3CIE0 DNA excision repair protein ERCC-11.4e-1891.07Show/hide
Query:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +SVSSSVSRNAILVSNRQK NPLLKHIRNVRW FADVVPDYLLGQSSCALYL L Y
Subjt:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

A0A5A7T0A2 DNA excision repair protein ERCC-11.4e-1891.07Show/hide
Query:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +SVSSSVSRNAILVSNRQK NPLLKHIRNVRW FADVVPDYLLGQSSCALYL L Y
Subjt:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

A0A5D3BSF5 DNA excision repair protein ERCC-11.4e-1891.07Show/hide
Query:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +SVSSSVSRNAILVSNRQK NPLLKHIRNVRW FADVVPDYLLGQSSCALYL L Y
Subjt:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

A0A6J1I0J7 DNA excision repair protein ERCC-1 isoform X25.9e-1783.93Show/hide
Query:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +S SSSV+RNAILVSNRQ+ NPLLKHIRNVRW FADVVPDYLLG+SSCALYL L Y
Subjt:  MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

SwissProt top hitse value%identityAlignment
P07903 DNA excision repair protein ERCC-11.0e-1052.73Show/hide
Query:  SVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        ++ +    N+I+VS RQ+ NP+LK +RNV W F +V+PDY+LGQS+CAL+L L Y
Subjt:  SVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

P07992 DNA excision repair protein ERCC-13.6e-1163.83Show/hide
Query:  NAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        N+I+VS RQ+ NP+LK +RNV W F DV+PDY+LGQS+CAL+L L Y
Subjt:  NAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

Q06182 Mating-type switching protein swi102.0e-0951.92Show/hide
Query:  SSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        S V+ ++ILV+ RQK NPLL H+RNV W + D+VPD+++G   C+L+L L Y
Subjt:  SSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

Q1LZ75 DNA excision repair protein ERCC-11.4e-1061.7Show/hide
Query:  NAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        N+I+VS RQ+ NP+L+ +RNV W F DV+PDY+LGQS+CAL+L L Y
Subjt:  NAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

Q9MA98 DNA excision repair protein ERCC-12.8e-1671.7Show/hide
Query:  SSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +++ +RNAILVS+RQK NPLLKHIRNV+WVF+D++PDY+LGQ+SCALYL L Y
Subjt:  SSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY

Arabidopsis top hitse value%identityAlignment
AT3G05210.1 nucleotide repair protein, putative2.0e-1771.7Show/hide
Query:  SSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY
        +++ +RNAILVS+RQK NPLLKHIRNV+WVF+D++PDY+LGQ+SCALYL L Y
Subjt:  SSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGTCGAGTTCTGTTAGTCGCAATGCCATTCTTGTCAGTAATAGACAGAAGGAAAATCCTCTTCTCAAACACATCAGGAATGTGAGATGGGTTTTTGCAGATGT
AGTACCTGATTATTTACTTGGGCAAAGCTCTTGTGCTCTCTATCTAAGACTAGACTATATTGCATGGATTCTTAAGGTACGATTTTCGTCTGTATTTCTTCGATTTGCTT
CACACGATCTGTCTTCACTATCAATACGTGCCTTAGCTCCCACTGCAGTAGTGATGCTGCCCGTGACGCCGTGGACTGTGCTGTGTTGTGCTGTGGGTTGTGCTAAATCA
TCGCAAACTAAAGTAGACGGTGAGGTTCACTTCTTCGCTTCTCTGCTAATCACCCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGTCGAGTTCTGTTAGTCGCAATGCCATTCTTGTCAGTAATAGACAGAAGGAAAATCCTCTTCTCAAACACATCAGGAATGTGAGATGGGTTTTTGCAGATGT
AGTACCTGATTATTTACTTGGGCAAAGCTCTTGTGCTCTCTATCTAAGACTAGACTATATTGCATGGATTCTTAAGGTACGATTTTCGTCTGTATTTCTTCGATTTGCTT
CACACGATCTGTCTTCACTATCAATACGTGCCTTAGCTCCCACTGCAGTAGTGATGCTGCCCGTGACGCCGTGGACTGTGCTGTGTTGTGCTGTGGGTTGTGCTAAATCA
TCGCAAACTAAAGTAGACGGTGAGGTTCACTTCTTCGCTTCTCTGCTAATCACCCGATAG
Protein sequenceShow/hide protein sequence
MSVSSSVSRNAILVSNRQKENPLLKHIRNVRWVFADVVPDYLLGQSSCALYLRLDYIAWILKVRFSSVFLRFASHDLSSLSIRALAPTAVVMLPVTPWTVLCCAVGCAKS
SQTKVDGEVHFFASLLITR