CuGenDBv2

Gene ID	Pay0019498
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	mediator of RNA polymerase II transcription subunit 27
Genome location	chr04:30514302..30517756
RNA-Seq Expression	Pay0019498
Synteny	Pay0019498
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component) GO:0003713 - transcription coactivator activity (molecular function)
InterPro domains	IPR021627 - Mediator complex, subunit Med27

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136512.1 mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativus]

9.5e-236

98.34

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Query:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR
Subjt:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        SLSDILSC+EKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Subjt:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS
        PDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPP VRPYKQFCASKNSS VPITS
Subjt:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS

Query:  LKDQKLDSVQAFHIDCFSEEI
        LKDQKLDSVQAFHIDCFSEEI
Subjt:  LKDQKLDSVQAFHIDCFSEEI

XP_008442914.1 PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo]

5.4e-239

99.76

Show/hide

Query:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR
Subjt:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHP+GSVEPDALAFFS
Subjt:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS
        PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS
Subjt:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS

Query:  LKDQKLDSVQAFHIDCFSEEI
        LKDQKLDSVQAFHIDCFSEEI
Subjt:  LKDQKLDSVQAFHIDCFSEEI

XP_022940393.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata]

3.1e-210

88.63

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Query:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EPA KKPCFSHGVTDVKQ EL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQASALPSQANENSIGALKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP
        FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SS VP
Subjt:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP

Query:  ITSLKDQKLDSVQAFHIDCFSE
        +TSLKDQKLDSVQAFHI CF+E
Subjt:  ITSLKDQKLDSVQAFHIDCFSE

XP_023539656.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pepo]

4.0e-210

88.86

Show/hide

Query:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DEN SN EPA KKPCFSHGVTDVKQ EL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQASAL SQANENSIGALKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP
        FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SSAVP
Subjt:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP

Query:  ITSLKDQKLDSVQAFHIDCFSE
        +TSLKDQKLDSVQAFHI CF+E
Subjt:  ITSLKDQKLDSVQAFHIDCFSE

XP_038904949.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida]

8.9e-226

93.63

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Query:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQP+QGQTATVSPNT   HSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEPALKKPCFSHGVTDVKQNEL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        DSRSLS+IL+C+EKEVPELKIFTYERLDWLKQASALPSQANENSIG LKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP
        FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYFLGNQ KAALYPLLLWICSYQNLFSKACSKCG+ LSVNKQSDLLLPP VRPYKQFCASKNSS+VP
Subjt:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP

Query:  ITSLKDQKLDSVQAFHIDCFSEEI
        ITSLKDQKLDSVQAFHIDCFS E+
Subjt:  ITSLKDQKLDSVQAFHIDCFSEEI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGT1 Uncharacterized protein

4.6e-236

98.34

Show/hide

Query:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR
Subjt:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        SLSDILSC+EKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Subjt:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS
        PDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPP VRPYKQFCASKNSS VPITS
Subjt:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS

Query:  LKDQKLDSVQAFHIDCFSEEI
        LKDQKLDSVQAFHIDCFSEEI
Subjt:  LKDQKLDSVQAFHIDCFSEEI

A0A1S3B7L6 mediator of RNA polymerase II transcription subunit 27

2.6e-239

99.76

Show/hide

Query:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR
Subjt:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHP+GSVEPDALAFFS
Subjt:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS
        PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS
Subjt:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS

Query:  LKDQKLDSVQAFHIDCFSEEI
        LKDQKLDSVQAFHIDCFSEEI
Subjt:  LKDQKLDSVQAFHIDCFSEEI

A0A6J1DC62 mediator of RNA polymerase II transcription subunit 27

2.7e-204

85.38

Show/hide

Query:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQP+QGQTATVSPNT   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQS+KPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DE+  N EPALKKPCFSHGVT++KQ+EL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        + R+LSDIL+C+EKEVP+LKIFTYERLDWLKQA AL SQAN+NSIGALKEH+YHSPRM PG+L A+  DK  VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP
        FF+PDERGS+VHARGFS +H+FRHVTEHAATVLQYFLG Q KAALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP +RPYKQFC S+  SAVP
Subjt:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP

Query:  ITSLKDQKLDSVQAFHIDCFSEEI
        I+SLKDQ+ D VQAFHI CFSEE+
Subjt:  ITSLKDQKLDSVQAFHIDCFSEEI

A0A6J1FP59 mediator of RNA polymerase II transcription subunit 27

1.5e-210

88.63

Show/hide

Query:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EPA KKPCFSHGVTDVKQ EL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQASALPSQANENSIGALKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP
        FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SS VP
Subjt:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP

Query:  ITSLKDQKLDSVQAFHIDCFSE
        +TSLKDQKLDSVQAFHI CF+E
Subjt:  ITSLKDQKLDSVQAFHIDCFSE

A0A6J1KZZ9 mediator of RNA polymerase II transcription subunit 27

4.3e-210

88.39

Show/hide

Query:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EPA KKPCFSHGVTDVKQ EL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        DS SLSDIL+C+EKEVP+LKIFTYERLDWLKQAS LPSQANENSIG LKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP
        FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP +RPYKQFC SK SSAVP
Subjt:  FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVP

Query:  ITSLKDQKLDSVQAFHIDCFSE
        +TSLKDQKLDSVQAFHI CF+E
Subjt:  ITSLKDQKLDSVQAFHIDCFSE

SwissProt top hits

e value

%identity

Alignment

Q8RWM3 Mediator of RNA polymerase II transcription subunit 27

2.7e-124

57.14

Show/hide

Query:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        M+ + Q    Q    + N  S S   DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDASMRQHL DLR +GK+LEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVL+ESL SRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D      EP+ KK   SH + +  + E +D +
Subjt:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        +L DI S +EK VP +K+ TY RL+WLK+A++LP   +++   A K     S ++  G L     DK  VIEL  PS+FRA+VSL P GSV+PDA+AFFS
Subjt:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS
        PDE GS++HARGFS YHV++H+TEHAAT LQYFLG     ALY LLLWICS++++FSK C+KCGR L+++K+S L+LPP+ R Y++   + N        
Subjt:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS

Query:  LKDQKLDSVQAFHIDCFSEE
             LD  +A+H  C  ++
Subjt:  LKDQKLDSVQAFHIDCFSEE

Arabidopsis top hits

e value

%identity

Alignment

AT3G09180.1 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

1.9e-125

57.14

Show/hide

Query:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        M+ + Q    Q    + N  S S   DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDASMRQHL DLR +GK+LEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVL+ESL SRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D      EP+ KK   SH + +  + E +D +
Subjt:  SGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        +L DI S +EK VP +K+ TY RL+WLK+A++LP   +++   A K     S ++  G L     DK  VIEL  PS+FRA+VSL P GSV+PDA+AFFS
Subjt:  SLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS
        PDE GS++HARGFS YHV++H+TEHAAT LQYFLG     ALY LLLWICS++++FSK C+KCGR L+++K+S L+LPP+ R Y++   + N        
Subjt:  PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITS

Query:  LKDQKLDSVQAFHIDCFSEE
             LD  +A+H  C  ++
Subjt:  LKDQKLDSVQAFHIDCFSEE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGACACATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAACACTCACTCTCCCTCCTCTGCCGACGACGCTCCTCCCAAGCAGGTTGCTCTCGCCAT
GGACAGACTCGGCCACGCCGCTCGTCTTATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTTACTGCTCAGCCTCATCAAAGCTCTAAGCCTC
TCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGAAAGCAGCTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCG
AGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGA
CCGAACCAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGCGTCAAATAATGAGCCTGCTTTGAAGAAGCCTTGTT
TTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTGTGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACT
TATGAGCGATTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCC
TGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATTATTCCTTCGGTCTTTAGAGCCGTAGTATCTCTGCATCCAGTTGGTTCTGTTGAACCAG
ATGCTCTCGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATGTGTTCAGACATGTTACGGAGCATGCTGCCACGGTGCTG
CAGTATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTGTTTTCAAAAGCTTGTAGTAAATGTGGACGGCGGCT
ATCAGTAAACAAACAATCCGATTTATTGTTACCTCCTGTAGTTCGGCCGTACAAACAGTTTTGTGCATCAAAAAACTCATCAGCTGTGCCCATAACCTCACTGAAAGACC
AGAAGCTGGATTCTGTTCAAGCTTTCCACATTGATTGTTTCTCAGAAGAAATATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLS
RSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFT
YERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHVFRHVTEHAATVL
QYFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCFSEEI

Pay0019498 (gene) of Melon (Payzawat) v1 genome