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Pay0019645 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0019645
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionPol protein
Genome locationchr10:26684707..26702855
RNA-Seq ExpressionPay0019645
SyntenyPay0019645
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035748.1 pol protein [Cucumis melo var. makuwa]5.6e-6785.81Show/hide
Query:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK
        MQ AQSRQKSY DVRRKD+EFDVGDK+FLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAY LALPPSLSAVHDVFHVSMLR KYV+DP+HV+D++
Subjt:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK

Query:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA
        PL+I ENLSY EQ VE+LAREVK LRNR I LVKVLWRNHRVEEATWE+EDD+R+
Subjt:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA

KAA0042366.1 pol protein [Cucumis melo var. makuwa]1.6e-6685.16Show/hide
Query:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK
        MQT QSRQKSY DVRRKD+EFDVGDK+FLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAY LALPPSLS VHDVFHVSMLR KYV DP+HV+D++
Subjt:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK

Query:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA
        PL+I ENLSY EQ VE+LAREVK LRN+ I LVKVLWRNHRVEEATWEREDD+R+
Subjt:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA

KAA0053412.1 pol protein [Cucumis melo var. makuwa]2.1e-6684.52Show/hide
Query:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK
        MQTAQSRQKSY DVRRKD+EFDVGDK+FLKVAPMKGVLRF+RRGKLSPRFVGPFEILERIGPVAY LALPPSLS VH+VFHVSMLR KYV+DP+HV+D++
Subjt:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK

Query:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA
        PL+I ENLSY EQ +E+LAREVK LRNR I LVKVLWRNHRVEEATWEREDD+R+
Subjt:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA

KAA0057631.1 pol protein [Cucumis melo var. makuwa]2.1e-6686.45Show/hide
Query:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK
        MQTAQSRQKSY DVRRKD+EFDVGDK+FLKVAPMK VLRFERRGKLSPRFV PFEILERIGPVAY LALPPSLS VHDVFHVSML KKYV+DP+HV+DF+
Subjt:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK

Query:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA
        PL+I ENLSY EQ VE+LAREVK LRNR I LVKVLWRNHRVEEATWEREDDIR+
Subjt:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA

TYK16001.1 pol protein [Cucumis melo var. makuwa]2.1e-6686.45Show/hide
Query:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK
        MQTAQSRQKSY DVRRKD+EFDVGDK+FLKVAPMK VLRFERRGKLSPRFV PFEILERIGPVAY LALPPSLS VHDVFHVSML KKYV+DP+HV+DF+
Subjt:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK

Query:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA
        PL+I ENLSY EQ VE+LAREVK LRNR I LVKVLWRNHRVEEATWEREDDIR+
Subjt:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA

TrEMBL top hitse value%identityAlignment
A0A5A7SYV5 Pol protein2.7e-6785.81Show/hide
Query:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK
        MQ AQSRQKSY DVRRKD+EFDVGDK+FLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAY LALPPSLSAVHDVFHVSMLR KYV+DP+HV+D++
Subjt:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK

Query:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA
        PL+I ENLSY EQ VE+LAREVK LRNR I LVKVLWRNHRVEEATWE+EDD+R+
Subjt:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA

A0A5A7TK90 Reverse transcriptase7.9e-6785.16Show/hide
Query:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK
        MQT QSRQKSY DVRRKD+EFDVGDK+FLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAY LALPPSLS VHDVFHVSMLR KYV DP+HV+D++
Subjt:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK

Query:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA
        PL+I ENLSY EQ VE+LAREVK LRN+ I LVKVLWRNHRVEEATWEREDD+R+
Subjt:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA

A0A5A7UCD5 Reverse transcriptase1.0e-6684.52Show/hide
Query:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK
        MQTAQSRQKSY DVRRKD+EFDVGDK+FLKVAPMKGVLRF+RRGKLSPRFVGPFEILERIGPVAY LALPPSLS VH+VFHVSMLR KYV+DP+HV+D++
Subjt:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK

Query:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA
        PL+I ENLSY EQ +E+LAREVK LRNR I LVKVLWRNHRVEEATWEREDD+R+
Subjt:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA

A0A5A7UVU1 Pol protein1.0e-6686.45Show/hide
Query:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK
        MQTAQSRQKSY DVRRKD+EFDVGDK+FLKVAPMK VLRFERRGKLSPRFV PFEILERIGPVAY LALPPSLS VHDVFHVSML KKYV+DP+HV+DF+
Subjt:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK

Query:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA
        PL+I ENLSY EQ VE+LAREVK LRNR I LVKVLWRNHRVEEATWEREDDIR+
Subjt:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA

A0A5D3CVS0 Pol protein1.0e-6686.45Show/hide
Query:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK
        MQTAQSRQKSY DVRRKD+EFDVGDK+FLKVAPMK VLRFERRGKLSPRFV PFEILERIGPVAY LALPPSLS VHDVFHVSML KKYV+DP+HV+DF+
Subjt:  MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFK

Query:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA
        PL+I ENLSY EQ VE+LAREVK LRNR I LVKVLWRNHRVEEATWEREDDIR+
Subjt:  PLQIKENLSYEEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRA

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.9e-0537.08Show/hide
Query:  MQTAQSRQKSYVDVRRKDI-EFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAV-HDVFHVSMLRK
        + T   + K Y D++ ++I EF  GD + +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  MQTAQSRQKSYVDVRRKDI-EFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAV-HDVFHVSMLRK

P0CT35 Transposon Tf2-2 polyprotein4.9e-0537.08Show/hide
Query:  MQTAQSRQKSYVDVRRKDI-EFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAV-HDVFHVSMLRK
        + T   + K Y D++ ++I EF  GD + +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  MQTAQSRQKSYVDVRRKDI-EFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAV-HDVFHVSMLRK

P0CT36 Transposon Tf2-3 polyprotein4.9e-0537.08Show/hide
Query:  MQTAQSRQKSYVDVRRKDI-EFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAV-HDVFHVSMLRK
        + T   + K Y D++ ++I EF  GD + +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  MQTAQSRQKSYVDVRRKDI-EFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAV-HDVFHVSMLRK

P0CT41 Transposon Tf2-12 polyprotein4.9e-0537.08Show/hide
Query:  MQTAQSRQKSYVDVRRKDI-EFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAV-HDVFHVSMLRK
        + T   + K Y D++ ++I EF  GD + +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  MQTAQSRQKSYVDVRRKDI-EFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAV-HDVFHVSMLRK

Q9UR07 Transposon Tf2-11 polyprotein4.9e-0537.08Show/hide
Query:  MQTAQSRQKSYVDVRRKDI-EFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAV-HDVFHVSMLRK
        + T   + K Y D++ ++I EF  GD + +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  MQTAQSRQKSYVDVRRKDI-EFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAV-HDVFHVSMLRK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGACCGCACAGAGTAGGCAGAAGAGTTATGTTGATGTGAGACGAAAGGATATTGAATTTGATGTGGGGGACAAAATGTTCTTAAAAGTAGCACCTATGAAAGGTGT
CTTACGATTTGAAAGGAGAGGAAAGCTGAGTCCTCGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGAATTGGCCCTGTAGCATATTGCTTGGCGTTGCCGCCATCACTCT
CGGCAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGAAGTATGTCACAGACCCGACGCATGTAATGGACTTCAAGCCATTGCAAATTAAGGAGAACTTGAGCTAC
GAGGAGCAACTTGTTGAGATTTTGGCAAGGGAGGTCAAGAGGCTCCGTAATCGAGGAATTGCACTGGTCAAGGTTCTTTGGCGAAACCACAGAGTTGAAGAGGCCACATG
GGAGAGAGAAGATGACATAAGAGCTAGTACTGGTCGTGCTGTCCGAGCTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGACCGCACAGAGTAGGCAGAAGAGTTATGTTGATGTGAGACGAAAGGATATTGAATTTGATGTGGGGGACAAAATGTTCTTAAAAGTAGCACCTATGAAAGGTGT
CTTACGATTTGAAAGGAGAGGAAAGCTGAGTCCTCGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGAATTGGCCCTGTAGCATATTGCTTGGCGTTGCCGCCATCACTCT
CGGCAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGAAGTATGTCACAGACCCGACGCATGTAATGGACTTCAAGCCATTGCAAATTAAGGAGAACTTGAGCTAC
GAGGAGCAACTTGTTGAGATTTTGGCAAGGGAGGTCAAGAGGCTCCGTAATCGAGGAATTGCACTGGTCAAGGTTCTTTGGCGAAACCACAGAGTTGAAGAGGCCACATG
GGAGAGAGAAGATGACATAAGAGCTAGTACTGGTCGTGCTGTCCGAGCTGTTTGA
Protein sequenceShow/hide protein sequence
MQTAQSRQKSYVDVRRKDIEFDVGDKMFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYCLALPPSLSAVHDVFHVSMLRKKYVTDPTHVMDFKPLQIKENLSY
EEQLVEILAREVKRLRNRGIALVKVLWRNHRVEEATWEREDDIRASTGRAVRAV