CuGenDBv2

Gene ID	Pay0019873
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Thylakoid protein sll1769
Genome location	chr01:24008378..24011923
RNA-Seq Expression	Pay0019873
Synteny	Pay0019873
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domains	IPR040003 - Plastoglobular protein 18-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139667.1 uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]

4.3e-73

89.33

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Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSS +TSSVS SPFSLV TKPKITHYS PSLL FRSSSTPSNL+FRGISHFQPNG SR LARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
        GIG+LQAEQQKQITDFQDEVIERAKKAKEKAAR++KEVQ PVSSSVISP IEV SSPTSSSPDADSES VNQDP LG+
Subjt:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD

XP_008447268.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo]

1.7e-85

100

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Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
        GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
Subjt:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD

XP_016900330.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X2 [Cucumis melo]

1.8e-55

98.33

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Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQDEV
        GIGKLQAEQQKQITDFQ E+
Subjt:  GIGKLQAEQQKQITDFQDEV

XP_022953678.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata]

2.5e-52

68.65

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Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSS + SSVS S FS+VPTK KITH SSPSL+ FRSSST SNL+FR      PNGS R +A CSSGDGD+RT+LDAFF+GKA AE LTER+EST+GEVL 
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTS-------SSPDADSESGVNQDPPLGD
         IG+LQAE+Q+QI DFQ+EVI+RAKKAKEKA R+AKE Q P+SSS+IS TIEV+SSPT+       SSP+A SE+ VNQDPP GD
Subjt:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTS-------SSPDADSESGVNQDPPLGD

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]

1.0e-69

82.7

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Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSS +TSSVS SPFSLVPTKPKITHYSS SLL FRSSSTPSNL+FR ISHFQPNGS R +ARCSSGDGDSRT+LDAFFLGKALAEALTERIEST+GEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTS-------SSPDADSESGVNQDPPLGD
        GIG+LQAEQQKQITDFQ+EVIERAKKAK+KAAR+AKEVQ PVSSS+ SPTIEV+SSPT        S+PD DSE+ VNQDPPLGD
Subjt:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTS-------SSPDADSESGVNQDPPLGD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6Q2 Uncharacterized protein

2.1e-73

89.33

Show/hide

Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSS +TSSVS SPFSLV TKPKITHYS PSLL FRSSSTPSNL+FRGISHFQPNG SR LARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
        GIG+LQAEQQKQITDFQDEVIERAKKAKEKAAR++KEVQ PVSSSVISP IEV SSPTSSSPDADSES VNQDP LG+
Subjt:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X1

8.2e-86

100

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Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
        GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
Subjt:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD

A0A1S4DX82 uncharacterized protein At4g13200, chloroplastic isoform X2

8.9e-56

98.33

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Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQDEV
        GIGKLQAEQQKQITDFQ E+
Subjt:  GIGKLQAEQQKQITDFQDEV

A0A6J1GNZ1 uncharacterized protein At4g13200, chloroplastic-like

1.2e-52

68.65

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Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSS + SSVS S FS+VPTK KITH SSPSL+ FRSSST SNL+FR      PNGS R +A CSSGDGD+RT+LDAFF+GKA AE LTER+EST+GEVL 
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTS-------SSPDADSESGVNQDPPLGD
         IG+LQAE+Q+QI DFQ+EVI+RAKKAKEKA R+AKE Q P+SSS+IS TIEV+SSPT+       SSP+A SE+ VNQDPP GD
Subjt:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTS-------SSPDADSESGVNQDPPLGD

A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like

1.7e-51

68.11

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Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSS + SSVS S FS++PT+ KITH SSPSL+ FRSSST SNL+FR      PNGS R +A CSSGDGD+RT+LDAFFLGKA AE LTER+EST+GEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSP-------DADSESGVNQDPPLGD
         IG+LQAE+Q+QI DFQ+EVIERAKKAKEKA R+AKE Q P+SSS++S TIEV+SSPT SS        +A SE+ VNQDPP GD
Subjt:  GIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSP-------DADSESGVNQDPPLGD

SwissProt top hits

e value

%identity

Alignment

P73628 Thylakoid protein sll1769

6.9e-05

36.25

Show/hide

Query:  ILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIE
        +L AFFLG+A AE L+E++E  +   LS +GK  AEQ++ +  F  EV  RA     +       V  PVS+  +  T++
Subjt:  ILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIE

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic

5.2e-21

47.62

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Query:  YSSPSLLPFRSSSTPSNLQFR--GISHFQPNGSSRLLARCS-----SGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQD
        Y+  S   F   ++ SN +F    +       S+ L + CS     SG+ +++++LDAFFLGKALAE + ERIEST+GEVLS IGK QAEQQKQ+ + Q+
Subjt:  YSSPSLLPFRSSSTPSNLQFR--GISHFQPNGSSRLLARCS-----SGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQD

Query:  EVIERAKKAKEKAAREAKEVQRPVSSSVI----SPTIEVSSSPTSSS
        EV+ERAKKAKE+AARE  E Q  V+S  +    +P   V +S TS+S
Subjt:  EVIERAKKAKEKAAREAKEVQRPVSSSVI----SPTIEVSSSPTSSS

Arabidopsis top hits

e value

%identity

Alignment

AT4G13200.1 unknown protein

3.7e-22

47.62

Show/hide

Query:  YSSPSLLPFRSSSTPSNLQFR--GISHFQPNGSSRLLARCS-----SGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQD
        Y+  S   F   ++ SN +F    +       S+ L + CS     SG+ +++++LDAFFLGKALAE + ERIEST+GEVLS IGK QAEQQKQ+ + Q+
Subjt:  YSSPSLLPFRSSSTPSNLQFR--GISHFQPNGSSRLLARCS-----SGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQD

Query:  EVIERAKKAKEKAAREAKEVQRPVSSSVI----SPTIEVSSSPTSSS
        EV+ERAKKAKE+AARE  E Q  V+S  +    +P   V +S TS+S
Subjt:  EVIERAKKAKEKAAREAKEVQRPVSSSVI----SPTIEVSSSPTSSS

Sequences

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CDS sequence

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ATGAGTAGTAGGATTACGTCTTCTGTTTCCTGGTCTCCCTTTTCGCTTGTACCCACTAAACCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGCTCCTC
TTCAACTCCTTCAAATCTCCAATTTCGTGGAATTTCACATTTTCAACCAAATGGGTCTTCCAGATTATTAGCTCGTTGCAGCTCTGGTGATGGTGACAGCAGGACCATTC
TAGATGCATTTTTTTTGGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGAGTGGGATTGGTAAGCTGCAAGCTGAACAACAA
AAACAAATTACTGATTTCCAGGATGAAGTGATAGAAAGAGCTAAAAAGGCCAAGGAAAAAGCAGCACGTGAGGCCAAAGAAGTACAACGACCCGTTTCCTCTTCAGTAAT
ATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTCTTCAAGTCCCGACGCAGATTCAGAAAGTGGTGTGAATCAGGATCCTCCCCTTGGTGACTAA

mRNA sequence

Show/hide mRNA sequence

AAATGTCAAACCATCTTGAACTTTTTTAGCTCAGAAAACTTTCCATTTACTTAGGCTGCCAATTTCCAGTCCATGAAAGTGGAAATTGGGTAAGCCGAACGAGGAATGAA
GCAAAAACAGGGTCGGTTCTAAGTCATTGTCATCACCTATCTCAAACCCACGATGCAAAATTTCCATTTTTATTTCCCCCCACTAAAGATCTTTCTTTTATAAATTCCTG
TTTGGCTCTCAAGAAAACGAGCGAGAAACTCTAAGAAAGTGACGCCGTGTAATTTTCCATTCCATCGCACAATATGAGTAGTAGGATTACGTCTTCTGTTTCCTGGTCTC
CCTTTTCGCTTGTACCCACTAAACCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGCTCCTCTTCAACTCCTTCAAATCTCCAATTTCGTGGAATTTCA
CATTTTCAACCAAATGGGTCTTCCAGATTATTAGCTCGTTGCAGCTCTGGTGATGGTGACAGCAGGACCATTCTAGATGCATTTTTTTTGGGAAAAGCTTTGGCAGAAGC
CTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGAGTGGGATTGGTAAGCTGCAAGCTGAACAACAAAAACAAATTACTGATTTCCAGGATGAAGTGATAGAAA
GAGCTAAAAAGGCCAAGGAAAAAGCAGCACGTGAGGCCAAAGAAGTACAACGACCCGTTTCCTCTTCAGTAATATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTCT
TCAAGTCCCGACGCAGATTCAGAAAGTGGTGTGAATCAGGATCCTCCCCTTGGTGACTAAGAGTAATGGTCACTGTGTCACTTTCTCTTGGTTATACTTATAGGGAATGT
AACCTATTTATCGATGATGATAATTAAGTTATTTGGCTTTGAAATCATATAGTAATTCCTTATTTAAGTTTATGTCTATTAGATATCTTATGAGTTTCTTGACATTGAAA
GATCAAACAACCTGATTTGTTTAGCAAGATTATTAGGGGATGTTTGACTTATGGGTTTGAAATTAAAAGGTTTGACATTTGAAGTCATGGGTATGTTTGATCGCTTCAAA
TTTGTTTTTTATTTTTAAAAATTATTTTTTAAATAATGAATGCCTTGAATTTTGAAAAAATTAGAGTCATTTCCTACCTCATGAATCATAGTTTTCTTTCATCTAAGCAG
ATAGGGTAGTTCAATTATTTCTGATCTTTATGGTGGATCTTCTCAAAGTTTGATTATTTGATGAATTTAATTTTCTATAGAACAATTTTGGCTCAGGTGACTATTAGGTT
TTTTTTTTGTTTTTGTTTTTAAAAATTAAGGAGTTCGAGAGTTTGTTATTATAATTTATGTTCGGGGCGTAGATTATTAGAGTCTTTTAGATTATTA

Protein sequence

Show/hide protein sequence

MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLLARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQ
KQITDFQDEVIERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD

Pay0019873 (gene) of Melon (Payzawat) v1 genome