CuGenDBv2

Gene ID	Pay0019914
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr01:22552576..22553954
RNA-Seq Expression	Pay0019914
Synteny	Pay0019914
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047979.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.7e-146

68.58

Show/hide

Query:  MKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILENMYKGVDRFKRVRLKKLRGDYESLH
        MKALLGSQDVWDI+SNGYEEPESDA+LNQAQ EALQNT KKDQKALTIIHQAIDD+NFEKISGATTA+QAWQILEN YKGVDR K+VRL+KLRGDYESLH
Subjt:  MKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILENMYKGVDRFKRVRLKKLRGDYESLH

Query:  MKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEEKLLKKNKQMTAQLFQSKLTLKDKKD
        MKESESVSDYTS LLAVVNEMKRFGETI DEQVVEKI RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHEEKLLKKNKQMT QLFQSKL LKDK+ 
Subjt:  MKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEEKLLKKNKQMTAQLFQSKLTLKDKKD

Query:  NLEKGNR---------------------------------------------------------------------------------------------
        +LEKGNR                                                                                             
Subjt:  NLEKGNR---------------------------------------------------------------------------------------------

Query:  ---------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEK
                 ACKG ET ENSAWY DSGASNH+CGSKSMF+ELDESVGGDIVFGDATKIP+KGKGKI INLKNGK+EFISNVYYVPNMKNNILSL QLLEK
Subjt:  ---------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEK

Query:  GYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI
        GYNILMKDY LLIRDNHD   AKVQ+TKNRMFLLNI
Subjt:  GYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI

KAA0062149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.7e-164

76.19

Show/hide

Query:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE
        MANNNLVPFQV R TK NYSSWCIRMKALLGSQDVWDI+SNGYEEPESDA+LNQAQ EALQNT KK QKALTIIHQAIDD+NFEKISGATTA+QAWQILE
Subjt:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE

Query:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE
        N YKGVDR K+VRL+KLRGDYESLHMKESESVSDYTS LLAVVNEMKRFGETI DEQVVEKI RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHEE
Subjt:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE

Query:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR-------------------------------------------------------------ACKGVET
        KLLKKNKQMT +LFQSKL LKDK+ +LEKGNR                                                             ACKG ET
Subjt:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR-------------------------------------------------------------ACKGVET

Query:  SENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDN
         ENSAWY DSGASNH+CGSKSMF+ELDESVGGDIVFGDATKIP+KGKGKI INLKNGK+EFISNVYYVPNMKNNILSL QLLEKGYNILMKDY LLIRDN
Subjt:  SENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDN

Query:  HD--NAKVQITKNRMFLLNI
        HD  NAKVQ+TKNRMFLLNI
Subjt:  HD--NAKVQITKNRMFLLNI

KAA0062322.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.2e-160

69.63

Show/hide

Query:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE
        MANNNLVPFQV R TK NYSSWCIRMKALLGSQDVWDI+SNGYEEPESDA+LNQAQ EALQNT KKDQKALTIIHQAIDD+NFEKISGATTA+QAWQILE
Subjt:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE

Query:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE
        N YKGVDR K+VRL+KLRGDYESLHMKESESVSDYTS LLAVVNEMKRFGETI DEQVVEKI RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHEE
Subjt:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE

Query:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR--------------------------------------------------------------------
        KLLKKNKQMT QLFQSKL LKDK+ +LEKGNR                                                                    
Subjt:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR--------------------------------------------------------------------

Query:  ----------------------------------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKY
                                          ACKG ET ENSAWY DSGASNH+CGSKSMF+ELDESVGGDIVFGDATKIP+KGKGKI INLKNGK+
Subjt:  ----------------------------------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKY

Query:  EFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI
        EFISNVYYVPNMKNNILSL QLLEKGYNILMKDY LLIRDNHD   AKVQ+TKNRMFLLNI
Subjt:  EFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.2e-160

69.63

Show/hide

Query:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE
        MANNNLVPFQV R TK NYSSWCIRMKALLGSQDVWDI+SNGYEEPESDA+LNQAQ EALQNT KKDQKALTIIHQAIDD+NFEKISGATTA+QAWQILE
Subjt:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE

Query:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE
        N YKGVDR K+VRL+KLRGDYESLHMKESESVSDYTS LLAVVNEMKRFGETI DEQVVEKI RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHEE
Subjt:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE

Query:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR--------------------------------------------------------------------
        KLLKKNKQMT QLFQSKL LKDK+ +LEKGNR                                                                    
Subjt:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR--------------------------------------------------------------------

Query:  ----------------------------------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKY
                                          ACKG ET ENSAWY DSGASNH+CGSKSMF+ELDESVGGDIVFGDATKIP+KGKGKI INLKNGK+
Subjt:  ----------------------------------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKY

Query:  EFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI
        EFISNVYYVPNMKNNILSL QLLEKGYNILMKDY LLIRDNHD   AKVQ+TKNRMFLLNI
Subjt:  EFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI

TYK18362.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.7e-146

68.58

Show/hide

Query:  MKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILENMYKGVDRFKRVRLKKLRGDYESLH
        MKALLGSQDVWDI+SNGYEEPESDA+LNQAQ EALQNT KKDQKALTIIHQAIDD+NFEKISGATTA+QAWQILEN YKGVDR K+VRL+KLRGDYESLH
Subjt:  MKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILENMYKGVDRFKRVRLKKLRGDYESLH

Query:  MKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEEKLLKKNKQMTAQLFQSKLTLKDKKD
        MKESESVSDYTS LLAVVNEMKRFGETI DEQVVEKI RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHEEKLLKKNKQMT QLFQSKL LKDK+ 
Subjt:  MKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEEKLLKKNKQMTAQLFQSKLTLKDKKD

Query:  NLEKGNR---------------------------------------------------------------------------------------------
        +LEKGNR                                                                                             
Subjt:  NLEKGNR---------------------------------------------------------------------------------------------

Query:  ---------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEK
                 ACKG ET ENSAWY DSGASNH+CGSKSMF+ELDESVGGDIVFGDATKIP+KGKGKI INLKNGK+EFISNVYYVPNMKNNILSL QLLEK
Subjt:  ---------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEK

Query:  GYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI
        GYNILMKDY LLIRDNHD   AKVQ+TKNRMFLLNI
Subjt:  GYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-146

68.58

Show/hide

Query:  MKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILENMYKGVDRFKRVRLKKLRGDYESLH
        MKALLGSQDVWDI+SNGYEEPESDA+LNQAQ EALQNT KKDQKALTIIHQAIDD+NFEKISGATTA+QAWQILEN YKGVDR K+VRL+KLRGDYESLH
Subjt:  MKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILENMYKGVDRFKRVRLKKLRGDYESLH

Query:  MKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEEKLLKKNKQMTAQLFQSKLTLKDKKD
        MKESESVSDYTS LLAVVNEMKRFGETI DEQVVEKI RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHEEKLLKKNKQMT QLFQSKL LKDK+ 
Subjt:  MKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEEKLLKKNKQMTAQLFQSKLTLKDKKD

Query:  NLEKGNR---------------------------------------------------------------------------------------------
        +LEKGNR                                                                                             
Subjt:  NLEKGNR---------------------------------------------------------------------------------------------

Query:  ---------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEK
                 ACKG ET ENSAWY DSGASNH+CGSKSMF+ELDESVGGDIVFGDATKIP+KGKGKI INLKNGK+EFISNVYYVPNMKNNILSL QLLEK
Subjt:  ---------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEK

Query:  GYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI
        GYNILMKDY LLIRDNHD   AKVQ+TKNRMFLLNI
Subjt:  GYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI

A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-160

69.63

Show/hide

Query:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE
        MANNNLVPFQV R TK NYSSWCIRMKALLGSQDVWDI+SNGYEEPESDA+LNQAQ EALQNT KKDQKALTIIHQAIDD+NFEKISGATTA+QAWQILE
Subjt:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE

Query:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE
        N YKGVDR K+VRL+KLRGDYESLHMKESESVSDYTS LLAVVNEMKRFGETI DEQVVEKI RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHEE
Subjt:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE

Query:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR--------------------------------------------------------------------
        KLLKKNKQMT QLFQSKL LKDK+ +LEKGNR                                                                    
Subjt:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR--------------------------------------------------------------------

Query:  ----------------------------------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKY
                                          ACKG ET ENSAWY DSGASNH+CGSKSMF+ELDESVGGDIVFGDATKIP+KGKGKI INLKNGK+
Subjt:  ----------------------------------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKY

Query:  EFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI
        EFISNVYYVPNMKNNILSL QLLEKGYNILMKDY LLIRDNHD   AKVQ+TKNRMFLLNI
Subjt:  EFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-146

68.58

Show/hide

Query:  MKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILENMYKGVDRFKRVRLKKLRGDYESLH
        MKALLGSQDVWDI+SNGYEEPESDA+LNQAQ EALQNT KKDQKALTIIHQAIDD+NFEKISGATTA+QAWQILEN YKGVDR K+VRL+KLRGDYESLH
Subjt:  MKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILENMYKGVDRFKRVRLKKLRGDYESLH

Query:  MKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEEKLLKKNKQMTAQLFQSKLTLKDKKD
        MKESESVSDYTS LLAVVNEMKRFGETI DEQVVEKI RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHEEKLLKKNKQMT QLFQSKL LKDK+ 
Subjt:  MKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEEKLLKKNKQMTAQLFQSKLTLKDKKD

Query:  NLEKGNR---------------------------------------------------------------------------------------------
        +LEKGNR                                                                                             
Subjt:  NLEKGNR---------------------------------------------------------------------------------------------

Query:  ---------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEK
                 ACKG ET ENSAWY DSGASNH+CGSKSMF+ELDESVGGDIVFGDATKIP+KGKGKI INLKNGK+EFISNVYYVPNMKNNILSL QLLEK
Subjt:  ---------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEK

Query:  GYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI
        GYNILMKDY LLIRDNHD   AKVQ+TKNRMFLLNI
Subjt:  GYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI

A0A5A7V8Y7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-164

76.19

Show/hide

Query:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE
        MANNNLVPFQV R TK NYSSWCIRMKALLGSQDVWDI+SNGYEEPESDA+LNQAQ EALQNT KK QKALTIIHQAIDD+NFEKISGATTA+QAWQILE
Subjt:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE

Query:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE
        N YKGVDR K+VRL+KLRGDYESLHMKESESVSDYTS LLAVVNEMKRFGETI DEQVVEKI RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHEE
Subjt:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE

Query:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR-------------------------------------------------------------ACKGVET
        KLLKKNKQMT +LFQSKL LKDK+ +LEKGNR                                                             ACKG ET
Subjt:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR-------------------------------------------------------------ACKGVET

Query:  SENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDN
         ENSAWY DSGASNH+CGSKSMF+ELDESVGGDIVFGDATKIP+KGKGKI INLKNGK+EFISNVYYVPNMKNNILSL QLLEKGYNILMKDY LLIRDN
Subjt:  SENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDN

Query:  HD--NAKVQITKNRMFLLNI
        HD  NAKVQ+TKNRMFLLNI
Subjt:  HD--NAKVQITKNRMFLLNI

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-160

69.63

Show/hide

Query:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE
        MANNNLVPFQV R TK NYSSWCIRMKALLGSQDVWDI+SNGYEEPESDA+LNQAQ EALQNT KKDQKALTIIHQAIDD+NFEKISGATTA+QAWQILE
Subjt:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE

Query:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE
        N YKGVDR K+VRL+KLRGDYESLHMKESESVSDYTS LLAVVNEMKRFGETI DEQVVEKI RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHEE
Subjt:  NMYKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEE

Query:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR--------------------------------------------------------------------
        KLLKKNKQMT QLFQSKL LKDK+ +LEKGNR                                                                    
Subjt:  KLLKKNKQMTAQLFQSKLTLKDKKDNLEKGNR--------------------------------------------------------------------

Query:  ----------------------------------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKY
                                          ACKG ET ENSAWY DSGASNH+CGSKSMF+ELDESVGGDIVFGDATKIP+KGKGKI INLKNGK+
Subjt:  ----------------------------------ACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKY

Query:  EFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI
        EFISNVYYVPNMKNNILSL QLLEKGYNILMKDY LLIRDNHD   AKVQ+TKNRMFLLNI
Subjt:  EFISNVYYVPNMKNNILSLRQLLEKGYNILMKDYILLIRDNHDN--AKVQITKNRMFLLNI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

4.4e-22

51.09

Show/hide

Query:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTA
        MA+NN VPFQV   TK NY +W +RMKA+LG+ DVW+I+  G+ EPE++ SL+Q Q + L+++ K+D+KAL +I+Q +D+  FEK+  AT+A
Subjt:  MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTA

AT3G21000.1 Gag-Pol-related retrotransposon family protein

1.7e-21

24.5

Show/hide

Query:  NYSSWCIRMKALLGSQDVWDIISNGY-----EEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE--NMYKGVDRFK
        +Y  W    K+ L  Q +WD++ NG      + PE  A++   +    ++   KD KAL I+  ++ DS F K   A++A   W +L   N    + R +
Subjt:  NYSSWCIRMKALLGSQDVWDIISNGY-----EEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILE--NMYKGVDRFK

Query:  RVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASL--QAHEE--------
        +V +++L    E L M + ES S Y    L ++  + R      D ++ + +F +L  +F+ +   +EEL D+  M+   L+     + HE         
Subjt:  RVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASL--QAHEE--------

Query:  -----KLLKKNKQMTAQLFQSKLTLKDKK-----DNLEKGNRAC----------KGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATK
             +L  K+++     +++    +D K     D  EK +              G +T ++  W     A  ++      F  LD +    +   D T 
Subjt:  -----KLLKKNKQMTAQLFQSKLTLKDKK-----DNLEKGNRAC----------KGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATK

Query:  IPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEKGYNI
        + ++GKG + I +K GK + I NV +VP +  N+LS  +++ K Y+I
Subjt:  IPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEKGYNI

Sequences

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CDS sequence

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ATGGCAAACAACAATTTAGTTCCCTTCCAAGTACTTCGATTTACGAAAGGAAATTATAGCAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTGTGGGA
CATTATTAGTAATGGTTATGAAGAACCCGAAAGTGATGCATCTTTGAATCAAGCTCAATGTGAAGCTTTACAAAATACAAGCAAAAAAGATCAAAAGGCTCTCACCATCA
TTCATCAAGCCATTGATGATTCAAATTTTGAGAAAATTTCTGGAGCAACTACTGCACATCAAGCATGGCAAATTTTGGAGAATATGTATAAAGGAGTAGATCGATTCAAG
AGGGTTCGCCTTAAAAAATTGAGAGGTGATTATGAATCACTACATATGAAGGAGTCTGAATCAGTTTCAGATTATACTTCAGGATTGCTAGCAGTAGTAAATGAAATGAA
AAGATTTGGTGAGACAATAGGTGATGAGCAAGTAGTAGAAAAAATATTTCGCTCATTAGATGAAAATTTTAATTTCATCGTTGTAGCCATTGAAGAATTAAAGGATTTGA
GTACAATGTCCATTGATCAACTTATGGCTTCTTTACAAGCCCATGAAGAGAAGCTTCTTAAGAAGAACAAGCAGATGACTGCGCAACTTTTTCAGTCAAAGTTGACATTA
AAAGACAAGAAAGACAACCTAGAAAAAGGCAATCGAGCATGTAAAGGTGTGGAAACAAGTGAAAACAGTGCATGGTATCCCGATAGTGGTGCAAGCAATCACTTGTGTGG
AAGTAAATCAATGTTCATGGAACTTGATGAATCTGTTGGTGGCGATATCGTATTTGGTGATGCCACAAAAATTCCAATGAAAGGAAAAGGTAAAATTTTTATCAATTTGA
AGAATGGGAAGTATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTGAGTTTGAGGCAACTCTTAGAGAAAGGCTATAATATTTTGATGAAG
GATTATATTCTTTTGATAAGAGATAATCATGATAATGCTAAAGTGCAAATAACAAAAAATAGAATGTTTTTATTAAACATTTAA

mRNA sequence

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Protein sequence

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MANNNLVPFQVLRFTKGNYSSWCIRMKALLGSQDVWDIISNGYEEPESDASLNQAQCEALQNTSKKDQKALTIIHQAIDDSNFEKISGATTAHQAWQILENMYKGVDRFK
RVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKIFRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEEKLLKKNKQMTAQLFQSKLTL
KDKKDNLEKGNRACKGVETSENSAWYPDSGASNHLCGSKSMFMELDESVGGDIVFGDATKIPMKGKGKIFINLKNGKYEFISNVYYVPNMKNNILSLRQLLEKGYNILMK
DYILLIRDNHDNAKVQITKNRMFLLNI

Pay0019914 (gene) of Melon (Payzawat) v1 genome