CuGenDBv2

Gene ID	Pay0019976
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonuclease H
Genome location	chr03:21177453..21177659
RNA-Seq Expression	Pay0019976
Synteny	Pay0019976
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031666.1 uncharacterized protein E6C27_scaffold139G004460 [Cucumis melo var. makuwa]

2.1e-28

97.06

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Query:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
        MTDNG KFSNSMIDKLCEKFKFKQYKSSMYNAAANG GEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
Subjt:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

KAA0033244.1 uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa]

2.0e-26

91.18

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Query:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
        +TDNGR+FSNSMIDKLCEKFKF+QYKSSMYNAAANG  EAFNKTLCNLLKKIVSKSKRDWQERI EAL
Subjt:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

KAA0059585.1 uncharacterized protein E6C27_scaffold54G00040 [Cucumis melo var. makuwa]

1.5e-26

91.18

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Query:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
        +TDNGR+FSN+MIDKLCEKFKFKQYKSSMYNA ANG  EAFNKTLCNLLKKIVSKSKRDWQERIDEAL
Subjt:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

TYK04445.1 uncharacterized protein E5676_scaffold409G00440 [Cucumis melo var. makuwa]

2.1e-28

97.06

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Query:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
        MTDNG KFSNSMIDKLCEKFKFKQYKSSMYNAAANG GEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
Subjt:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

TYK27554.1 uncharacterized protein E5676_scaffold22G00230 [Cucumis melo var. makuwa]

2.6e-26

92.65

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Query:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
        MTDNGR+FSNSMIDKLC KFKFKQYKSSMYNAAANG  EAFNKTLCNLLKKIVSKSKRDWQERI EAL
Subjt:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SNS2 Ribonuclease H

1.0e-28

97.06

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Query:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
        MTDNG KFSNSMIDKLCEKFKFKQYKSSMYNAAANG GEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
Subjt:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

A0A5A7SPV8 Ribonuclease H

9.6e-27

91.18

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Query:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
        +TDNGR+FSNSMIDKLCEKFKF+QYKSSMYNAAANG  EAFNKTLCNLLKKIVSKSKRDWQERI EAL
Subjt:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

A0A5A7V172 Uncharacterized protein

7.4e-27

91.18

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Query:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
        +TDNGR+FSN+MIDKLCEKFKFKQYKSSMYNA ANG  EAFNKTLCNLLKKIVSKSKRDWQERIDEAL
Subjt:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

A0A5D3BZ59 Ribonuclease H

1.0e-28

97.06

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Query:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
        MTDNG KFSNSMIDKLCEKFKFKQYKSSMYNAAANG GEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
Subjt:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

A0A5D3DVM7 Ribonuclease H

1.3e-26

92.65

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Query:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL
        MTDNGR+FSNSMIDKLC KFKFKQYKSSMYNAAANG  EAFNKTLCNLLKKIVSKSKRDWQERI EAL
Subjt:  MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACAGATAATGGAAGGAAATTCTCCAATAGCATGATAGATAAATTATGTGAAAAATTCAAGTTCAAACAATACAAGTCATCTATGTATAATGCAGCTGCAAATGGCCA
AGGCGAAGCATTCAATAAAACGTTATGCAATCTTCTGAAGAAAATTGTCTCCAAGTCGAAGAGGGATTGGCAAGAAAGAATCGATGAAGCATTGTAG

mRNA sequence

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Protein sequence

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MTDNGRKFSNSMIDKLCEKFKFKQYKSSMYNAAANGQGEAFNKTLCNLLKKIVSKSKRDWQERIDEAL

Pay0019976 (gene) of Melon (Payzawat) v1 genome