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Pay0020048 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0020048
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReplication protein A 14 kDa subunit B-like
Genome locationchr10:1127512..1130005
RNA-Seq ExpressionPay0020048
SyntenyPay0020048
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]2.1e-4686.79Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFG TFD +SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

XP_004135037.1 replication protein A 14 kDa subunit B [Cucumis sativus]4.8e-5196.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

XP_008446755.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo]7.8e-54100Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]2.1e-4686.79Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTSNPAVF NGELL++H GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFGTTFD +SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]6.9e-5094.34Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTI GLPTVP MNFVEVVGIA++NK INVEHWTDFGTTFDT+SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein2.3e-5196.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A1S3BGM8 replication protein A 14 kDa subunit B-like3.8e-54100Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A5A7SU42 Replication protein A 14 kDa subunit B-like3.8e-54100Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A6J1D9X1 replication protein A 14 kDa subunit B-like3.3e-4279.25Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+HGLP VP MNFVEV+GIA+SNK INVEH TDFG TFD +SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        F+S+F+
Subjt:  FRSLFI

A0A6J1JC99 replication protein A 14 kDa subunit B-like8.5e-4685.85Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFGT FD +SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B1.1e-3158.49Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   ++EV+GIA+++ TI  E WT+FG +FD ++YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FR LFI
Subjt:  FRSLFI

Q9LXK1 Replication protein A 14 kDa subunit A1.0e-2754.21Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   ++EV+GIA+S+  I  E WT+FG TFDT++YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

Q9SDK9 Replication protein A 14 kDa subunit4.2e-2650.94Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTS PA FVNGE+L M  GR++R VVQ  + +GG++ G+STD  QLTI G    P  ++VE++GIA+ N+ I  E  TDFG  FD   +N LC+LANG+
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
         + LF+
Subjt:  FRSLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein7.1e-2954.21Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   ++EV+GIA+S+  I  E WT+FG TFDT++YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein7.1e-2954.21Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   ++EV+GIA+S+  I  E WT+FG TFDT++YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein8.1e-3358.49Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE
        MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   ++EV+GIA+++ TI  E WT+FG +FD ++YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGE

Query:  FRSLFI
        FR LFI
Subjt:  FRSLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATCGT
TACGGGAAAATCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACAGTTCCTCACATGAATTTCGTAGAGGTAGTTGGTATTGCTCAAAGCAACAAGACCATCA
ACGTTGAACATTGGACCGACTTTGGAACCACTTTTGATACTGAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAG
mRNA sequenceShow/hide mRNA sequence
ATTCCCGCCTCTTCTCAGTTAGTCACTTGAAATTCTCAATCTCTCTCTCTCTCTCTCAATCGTGCAAGGAAGAATCATCGTCTCACAGGATATGGATACGTCAAACCCTG
CAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATCGTTACGGGAAAATCTACGGAT
GAACAACAATTGACTATTCATGGCTTGCCCACAGTTCCTCACATGAATTTCGTAGAGGTAGTTGGTATTGCTCAAAGCAACAAGACCATCAACGTTGAACATTGGACCGA
CTTTGGAACCACTTTTGATACTGAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAGTGATTTGTAGGTACAGCATGGCAAGAAG
CTAAGAGGTATAATTTGTTATGTGATTTTGAGTCTTCTATGCTTTGTAACTCACGTGGGAGTCTTGAACTGCTAATCTATTAAAAGAACTCCTGTTTTGGTCTGTGTAAT
GTACCAAGCTATAAGCTAGGCGCGAAGTATGGAATTTTCCTGGAATTTAAAAGGGTTCCAATTTCTCAAGTAGTTGATTCACATATTTTTCATTGAGAAAAACCTACGTG
TAGTTGGGTGCACTTGAACTACACTCATCTTTTGTATAATTCGACTACCATTCAATTAGAATGTGTCACGTGTATTTTTTCTTTCATTTCTGTGGTAGAGAGAAGAGAAG
TTAGATTGTACTATTTCGTTGTTCTTTTTCATTTGTAGATCATACTACCCAATTAATTTTTAATTTTAGTTTCAT
Protein sequenceShow/hide protein sequence
MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI