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Pay0020080 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0020080
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptiontranscription factor PRE3-like
Genome locationchr02:22919371..22919754
RNA-Seq ExpressionPay0020080
SyntenyPay0020080
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138158.1 transcription factor PRE3-like [Cucumis sativus]2.6e-3797.83Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSA+KVLQETCNYIRNLH+EVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_008453188.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]1.2e-3798.91Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLH+EVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022135424.1 transcription factor ILI6-like [Momordica charantia]1.2e-3495.65Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDKVSAA VLQETCNYIR+LH+EVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022987208.1 transcription factor PRE3-like [Cucurbita maxima]7.8e-3492.39Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRH QSDKVSAAK+LQETCNYI+NLH+EVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_038880650.1 transcription factor PRE3-like [Benincasa hispida]4.1e-3596.74Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRH QSDKVSAAKVLQETCNYIRNLH+EVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

TrEMBL top hitse value%identityAlignment
A0A1S3BWE2 transcription factor PRE3-like5.6e-3898.91Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLH+EVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A1S3TPF8 transcription factor ILI68.4e-3489.13Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQ+G+SR+ITDDQINDLVSKLQQLLPEIR R SDKVSA+KVLQETCNYIR+LH+EVDDLSERLSELLAT+DTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1C1E4 transcription factor ILI6-like5.8e-3595.65Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDKVSAA VLQETCNYIR+LH+EVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1IDH8 transcription factor ILI6-like8.4e-3493.48Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYIR+LH+EVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1JIT1 transcription factor PRE3-like3.8e-3492.39Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRH QSDKVSAAK+LQETCNYI+NLH+EVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI64.6e-2980.65Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSD--TAQAAIIRSLLM
        MSSRRSRSRQSGSSR ITD+QI+DLVSKLQ LLPE R R +D+V +++VLQETCNYIR+LH+EVDDLSERLSELLATSD  +AQAAIIRSLLM
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSD--TAQAAIIRSLLM

F4JCN9 Transcription factor PRE41.4e-2572.04Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSR+SRSRQ+G+S  ITD+QINDLV +L +LLPE+  +R+S KVSA++VLQETC+YIRNL KEVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

Q0DUR2 Transcription factor ILI64.6e-2980.65Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSD--TAQAAIIRSLLM
        MSSRRSRSRQSGSSR ITD+QI+DLVSKLQ LLPE R R +D+V +++VLQETCNYIR+LH+EVDDLSERLSELLATSD  +AQAAIIRSLLM
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSD--TAQAAIIRSLLM

Q8GW32 Transcription factor PRE66.0e-2980.65Show/hide
Query:  MSSRR-SRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSD--TAQAAIIRSLL
        MSSRR SRSRQSGSSR I+DDQI+DLVSKLQ L+PE+R R+SDKVSA+KVLQETCNYIRNLH+EVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSSRR-SRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE33.2e-3078.49Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIR-HRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQS  +  I++DQINDL+ KLQQLLPE+R  R+SDKVSAA+VLQ+TCNYIRNLH+EVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIR-HRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.3e-3080.65Show/hide
Query:  MSSRR-SRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSD--TAQAAIIRSLL
        MSSRR SRSRQSGSSR I+DDQI+DLVSKLQ L+PE+R R+SDKVSA+KVLQETCNYIRNLH+EVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSSRR-SRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.3e-3178.49Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIR-HRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQS  +  I++DQINDL+ KLQQLLPE+R  R+SDKVSAA+VLQ+TCNYIRNLH+EVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIR-HRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.3e-2264.89Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELL--ATSDTAQAAIIRSLLM
        MS+R  RSRQ+ ++  I+DDQ+ DLVSKL+Q LPEI   R+SDKVSA+KVLQETCNYIR LH+EVD+LS+RLS+LL     D+ +AA+IRSLLM
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELL--ATSDTAQAAIIRSLLM

AT3G47710.1 BANQUO 39.9e-2772.04Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSR+SRSRQ+G+S  ITD+QINDLV +L +LLPE+  +R+S KVSA++VLQETC+YIRNL KEVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.9e-2265.96Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLAT--SDTAQAAIIRSLLM
        MS+R  RSRQS S+  I+D+Q+ DLVSKL+Q+LPEI + R+SDK SA+KVLQETCNYIRNL++EVD+LSERLS+LL +   D+ +AA+IRSLLM
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLAT--SDTAQAAIIRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCAGAAGATCTAGATCTAGACAGTCAGGTAGTTCAAGATCAATCACTGATGACCAAATTAATGATCTTGTTTCTAAGTTGCAACAACTTCTTCCCGAGATTCG
TCACAGGCAATCCGATAAGGTTTCGGCAGCGAAAGTGTTGCAGGAGACGTGTAACTACATACGAAACCTACACAAAGAAGTGGATGATTTGAGCGAGAGACTTTCGGAGT
TGTTGGCAACATCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTACTTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCAGAAGATCTAGATCTAGACAGTCAGGTAGTTCAAGATCAATCACTGATGACCAAATTAATGATCTTGTTTCTAAGTTGCAACAACTTCTTCCCGAGATTCG
TCACAGGCAATCCGATAAGGTTTCGGCAGCGAAAGTGTTGCAGGAGACGTGTAACTACATACGAAACCTACACAAAGAAGTGGATGATTTGAGCGAGAGACTTTCGGAGT
TGTTGGCAACATCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTACTTATGCAATAG
Protein sequenceShow/hide protein sequence
MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNLHKEVDDLSERLSELLATSDTAQAAIIRSLLMQ