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Pay0020088 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0020088
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:21761208..21761831
RNA-Seq ExpressionPay0020088
SyntenyPay0020088
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7132250.1 hypothetical protein RHSIM_Rhsim09G0033700 [Rhododendron simsii]6.5e-5460.1Show/hide
Query:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--
        MKKK+QG+ + KR+QLQ  R+EFE L+MK+ ESV D+F RTMTI NK+RIHG+K  DVT++E+I RSMA KFNFVVCS+EE+ DID LSIDELQSSLL  
Subjt:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--

Query:  ----------KQVFKASTKNQSTL------KGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKP--TNKSHIECHQFHKYSHYQ
                  +Q  KAS++N ST       +G RGRGR    GRG+NDRG+QQ HH+++ENQFQGRG+ RGG HST+Y P   NKS++EC++ H+Y HYQ
Subjt:  ----------KQVFKASTKNQSTL------KGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKP--TNKSHIECHQFHKYSHYQ

Query:  SEYRTNLN
        SE RTNLN
Subjt:  SEYRTNLN

KAF7151691.1 hypothetical protein RHSIM_Rhsim02G0093500 [Rhododendron simsii]2.5e-5359.62Show/hide
Query:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--
        MKKK+QG+ + KR+QLQ  R+EFE L+MK+ ESV D+F RTMTI NK+RIHG+K  DVT++E+I RSMA KFNFVVCS+EE+ DID LSIDELQSSLL  
Subjt:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--

Query:  ----------KQVFKASTKNQSTL------KGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKP--TNKSHIECHQFHKYSHYQ
                  +Q  KAS++N ST       +G RGRGR    GRG+NDRG+QQ HH+++ENQFQGRG+ RGG HST+Y P   +KS++EC++ H+Y HYQ
Subjt:  ----------KQVFKASTKNQSTL------KGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKP--TNKSHIECHQFHKYSHYQ

Query:  SEYRTNLN
        SE RTNLN
Subjt:  SEYRTNLN

XP_008456818.1 PREDICTED: uncharacterized protein LOC103496656 [Cucumis melo]4.9e-8683.41Show/hide
Query:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--
        MKKKHQGNVK K VQLQGLR EFETL+MKTSESVIDFF RTMTI NK+RIHGEKLEDVTIME+I RSM VKFNFVVCS+EESKDIDNLSID+LQSSLL  
Subjt:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--

Query:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKPTNKSHIECHQFHKYSHYQSEYRTNLN
                  +QVFKAST+NQST K D+GRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKPT+KSHIECH+ HKY HYQSEY+TNLN
Subjt:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKPTNKSHIECHQFHKYSHYQSEYRTNLN

Query:  SLCRA
        SLCRA
Subjt:  SLCRA

XP_008464977.1 PREDICTED: uncharacterized protein LOC103502717 [Cucumis melo]1.9e-5377.48Show/hide
Query:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--
        MKKK+QGNVK KRVQLQGLRT+FETL+MKTSESVIDFF RTMTI NK+RIHGEK+EDVTI+++I RSM  KFNFV CS+EESKDIDNLSIDELQSSLL  
Subjt:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--

Query:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHE
                  +QV KAST+NQST KGDRGRGRWRFKGRGSNDRGSQQ+HH+
Subjt:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHE

XP_024017383.1 uncharacterized protein LOC112090406 [Morus notabilis]4.2e-5360.41Show/hide
Query:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--
        MKKK+QG+ + KR QLQ LRTEFET +MK+ ESV D+F RTM I NK+RI+G++ +DVTI+E+I RSM  KFNFVVCS+EES DID LSIDELQSSLL  
Subjt:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--

Query:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRH-HEYEENQFQGRGKERGGHHSTTYK--PTNKSHIECHQFHKYSHYQSE
                  +Q  KAST+N S  +GDRGRGR R +GRG+NDRG+QQ+H H++++NQFQGRG+ RGG+HST+YK    +KS++EC++ H+Y HY+SE
Subjt:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRH-HEYEENQFQGRGKERGGHHSTTYK--PTNKSHIECHQFHKYSHYQSE

TrEMBL top hitse value%identityAlignment
A0A1S3C446 uncharacterized protein LOC1034966562.4e-8683.41Show/hide
Query:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--
        MKKKHQGNVK K VQLQGLR EFETL+MKTSESVIDFF RTMTI NK+RIHGEKLEDVTIME+I RSM VKFNFVVCS+EESKDIDNLSID+LQSSLL  
Subjt:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--

Query:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKPTNKSHIECHQFHKYSHYQSEYRTNLN
                  +QVFKAST+NQST K D+GRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKPT+KSHIECH+ HKY HYQSEY+TNLN
Subjt:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKPTNKSHIECHQFHKYSHYQSEYRTNLN

Query:  SLCRA
        SLCRA
Subjt:  SLCRA

A0A1S3CMQ7 uncharacterized protein LOC1035027179.1e-5477.48Show/hide
Query:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--
        MKKK+QGNVK KRVQLQGLRT+FETL+MKTSESVIDFF RTMTI NK+RIHGEK+EDVTI+++I RSM  KFNFV CS+EESKDIDNLSIDELQSSLL  
Subjt:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--

Query:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHE
                  +QV KAST+NQST KGDRGRGRWRFKGRGSNDRGSQQ+HH+
Subjt:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHE

A0A2P5BM83 Zinc finger, CCHC-type (Fragment)2.5e-5163.43Show/hide
Query:  MKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL------------KQVFKASTKNQSTLKGD
        MK+ ESV DFF RTMTI NK+RIHGE++EDVTI+E+I RSM  KFNF+VCS+EESKDID LSIDELQSSLL            +Q  KAST+N  T KGD
Subjt:  MKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL------------KQVFKASTKNQSTLKGD

Query:  RGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKP--TNKSHIECHQFHKYSHYQSEYRTNLN
        RG+GR R +GRGSNDRG+QQ+HH++++NQFQGRG+ R GHHST+++P   +KS++EC++ H+Y HY+SE RTNLN
Subjt:  RGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKP--TNKSHIECHQFHKYSHYQSEYRTNLN

A0A438I5N6 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-5158.91Show/hide
Query:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--
        MKKK+QG+ + KR QLQ L TEFETL+M++ ESV D+F RTM I NK+RIHG+K EDVTI+E+I RSM   FNFVVCS+EES DID LSIDELQSSLL  
Subjt:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--

Query:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYK--PTNKSHIECHQFHKYSHYQSEYRTN
                  +Q  KAST+N    +GDRGRGR R +GRG+ DRG+Q + H+ ++N+FQGRG  +GG++STTYK   T+KS++EC++ H+Y HY+SE RTN
Subjt:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYK--PTNKSHIECHQFHKYSHYQSEYRTN

Query:  LN
        +N
Subjt:  LN

A0A5A7UUP0 Uncharacterized protein9.1e-5477.48Show/hide
Query:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--
        MKKK+QGNVK KRVQLQGLRT+FETL+MKTSESVIDFF RTMTI NK+RIHGEK+EDVTI+++I RSM  KFNFV CS+EESKDIDNLSIDELQSSLL  
Subjt:  MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLL--

Query:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHE
                  +QV KAST+NQST KGDRGRGRWRFKGRGSNDRGSQQ+HH+
Subjt:  ----------KQVFKASTKNQSTLKGDRGRGRWRFKGRGSNDRGSQQRHHE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAGAAGCATCAAGGGAACGTGAAGGTAAAGCGGGTGCAGCTTCAAGGTCTTCGAACCGAATTCGAGACTCTACAAATGAAGACGAGCGAGTCGGTGATTGATTT
CTTTGTAAGAACAATGACAATCACCAACAAAATACGGATCCATGGAGAAAAATTGGAGGACGTCACCATTATGGAAAGGATTTTTCGATCAATGGCAGTGAAGTTTAATT
TCGTTGTATGTTCCGTAGAAGAGTCCAAAGATATTGATAATCTTTCAATTGATGAGTTACAGAGCTCTTTGCTGAAGCAAGTATTTAAGGCTTCAACTAAAAATCAGTCA
ACATTGAAAGGAGATAGAGGACGAGGAAGATGGCGATTTAAAGGCAGAGGAAGCAACGATCGTGGCAGCCAACAAAGACACCATGAGTACGAAGAGAATCAATTTCAAGG
AAGAGGAAAGGAAAGAGGAGGCCATCACTCAACAACTTACAAGCCAACAAACAAGTCACATATTGAATGCCACCAATTCCATAAGTATAGCCATTATCAATCAGAATATC
GAACAAATTTGAATTCACTTTGTAGAGCAAGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAGAAGCATCAAGGGAACGTGAAGGTAAAGCGGGTGCAGCTTCAAGGTCTTCGAACCGAATTCGAGACTCTACAAATGAAGACGAGCGAGTCGGTGATTGATTT
CTTTGTAAGAACAATGACAATCACCAACAAAATACGGATCCATGGAGAAAAATTGGAGGACGTCACCATTATGGAAAGGATTTTTCGATCAATGGCAGTGAAGTTTAATT
TCGTTGTATGTTCCGTAGAAGAGTCCAAAGATATTGATAATCTTTCAATTGATGAGTTACAGAGCTCTTTGCTGAAGCAAGTATTTAAGGCTTCAACTAAAAATCAGTCA
ACATTGAAAGGAGATAGAGGACGAGGAAGATGGCGATTTAAAGGCAGAGGAAGCAACGATCGTGGCAGCCAACAAAGACACCATGAGTACGAAGAGAATCAATTTCAAGG
AAGAGGAAAGGAAAGAGGAGGCCATCACTCAACAACTTACAAGCCAACAAACAAGTCACATATTGAATGCCACCAATTCCATAAGTATAGCCATTATCAATCAGAATATC
GAACAAATTTGAATTCACTTTGTAGAGCAAGAAGATGA
Protein sequenceShow/hide protein sequence
MKKKHQGNVKVKRVQLQGLRTEFETLQMKTSESVIDFFVRTMTITNKIRIHGEKLEDVTIMERIFRSMAVKFNFVVCSVEESKDIDNLSIDELQSSLLKQVFKASTKNQS
TLKGDRGRGRWRFKGRGSNDRGSQQRHHEYEENQFQGRGKERGGHHSTTYKPTNKSHIECHQFHKYSHYQSEYRTNLNSLCRARR