; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0020112 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0020112
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description50S ribosomal protein L1
Genome locationchr11:21891324..21894990
RNA-Seq ExpressionPay0020112
SyntenyPay0020112
Gene Ontology termsGO:0006412 - translation (biological process)
GO:1901135 - carbohydrate derivative metabolic process (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008483 - transaminase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0097367 - carbohydrate derivative binding (molecular function)
InterPro domainsIPR016095 - Ribosomal protein L1, 3-layer alpha/beta-sandwich
IPR023674 - Ribosomal protein L1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY92169.1 putative glucosamine-fructose-6-phosphate aminotransferase [Actinidia rufa]9.7e-1491.11Show/hide
Query:  TLCEKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        T CEKF+EAKNAGADLVGGEDLIEQIKGGFMEFDKLI++PDMMPK
Subjt:  TLCEKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
GFY92209.1 ribosomal protein L1p/L10e family [Actinidia rufa]9.7e-1491.11Show/hide
Query:  TLCEKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        T CEKF+EAKNAGADLVGGEDLIEQIKGGFMEFDKLI++PDMMPK
Subjt:  TLCEKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
KAA0054392.1 50S ribosomal protein L1 [Cucumis melo var. makuwa]2.4e-60100Show/hide
Query:  MLLTQKPSIFVVSSHSRVLPQRRRLPLLHLTSPSLNATSCYYRLGSDTAATVSVQTPRLLSLNTTATILVRTSRLFSLNTATTLCEKFNEAKNAGADLVG
        MLLTQKPSIFVVSSHSRVLPQRRRLPLLHLTSPSLNATSCYYRLGSDTAATVSVQTPRLLSLNTTATILVRTSRLFSLNTATTLCEKFNEAKNAGADLVG
Subjt:  MLLTQKPSIFVVSSHSRVLPQRRRLPLLHLTSPSLNATSCYYRLGSDTAATVSVQTPRLLSLNTTATILVRTSRLFSLNTATTLCEKFNEAKNAGADLVG

Query:  GEDLIEQIKGGFMEFDKLISSPDMMPK
        GEDLIEQIKGGFMEFDKLISSPDMMPK
Subjt:  GEDLIEQIKGGFMEFDKLISSPDMMPK
XP_027354619.1 50S ribosomal protein L1, chloroplastic isoform X3 [Abrus precatorius]6.3e-1395.24Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        EKF+EAKNAGADLVGGEDLIEQIKGGFMEFDKLI+SPDMMPK
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
XP_030965667.1 50S ribosomal protein L1, chloroplastic [Quercus lobata]6.3e-1395.24Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        EKF+EAKNAGADLVGGEDLIEQIKGGFMEFDKLI+SPDMMPK
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
TrEMBL top hitse value%identityAlignment
A0A1S3TKD3 Ribosomal protein3.1e-1395.24Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        EKF+EAKNAGADLVGGEDLIEQIKGGFMEFDKLI+SPDMMPK
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
A0A5A7UF52 50S ribosomal protein L11.1e-60100Show/hide
Query:  MLLTQKPSIFVVSSHSRVLPQRRRLPLLHLTSPSLNATSCYYRLGSDTAATVSVQTPRLLSLNTTATILVRTSRLFSLNTATTLCEKFNEAKNAGADLVG
        MLLTQKPSIFVVSSHSRVLPQRRRLPLLHLTSPSLNATSCYYRLGSDTAATVSVQTPRLLSLNTTATILVRTSRLFSLNTATTLCEKFNEAKNAGADLVG
Subjt:  MLLTQKPSIFVVSSHSRVLPQRRRLPLLHLTSPSLNATSCYYRLGSDTAATVSVQTPRLLSLNTTATILVRTSRLFSLNTATTLCEKFNEAKNAGADLVG

Query:  GEDLIEQIKGGFMEFDKLISSPDMMPK
        GEDLIEQIKGGFMEFDKLISSPDMMPK
Subjt:  GEDLIEQIKGGFMEFDKLISSPDMMPK
A0A5D3CGN7 Ribosomal protein3.1e-1395.24Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        EKF+EAKNAGADLVGGEDLIEQIKGGFMEFDKLI+SPDMMPK
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
A0A7J0F1T0 Putative glucosamine-fructose-6-phosphate aminotransferase4.7e-1491.11Show/hide
Query:  TLCEKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        T CEKF+EAKNAGADLVGGEDLIEQIKGGFMEFDKLI++PDMMPK
Subjt:  TLCEKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
A0A7J0F1X3 Ribosomal protein4.7e-1491.11Show/hide
Query:  TLCEKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        T CEKF+EAKNAGADLVGGEDLIEQIKGGFMEFDKLI++PDMMPK
Subjt:  TLCEKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
SwissProt top hitse value%identityAlignment
B8JB73 50S ribosomal protein L19.8e-0967.5Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMM
        +K  EA+ AGAD+VG EDL E+I+GGFM+FDKLI++PDMM
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMM
P49208 50S ribosomal protein L1, chloroplastic (Fragment)1.8e-1592.86Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        E+F+EAKNAGADLVGGEDLIEQIKGGFMEFDKLI+SPDMMPK
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
Q2II81 50S ribosomal protein L19.8e-0967.5Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMM
        +K  EA+ AGAD+VG EDL E+I+GGFM+FDKLI++PDMM
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMM
Q9LE95 50S ribosomal protein L1, chloroplastic1.4e-1073.81Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        +K +EAK AGAD+VGGE+LIEQIKGGFM+FDKLI++ DMM K
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
Q9LY66 50S ribosomal protein L1, chloroplastic4.2e-1280.95Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        EK +EAK+AGAD+VG +DLIEQIKGGFMEFDKLI+SPDMM K
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
Arabidopsis top hitse value%identityAlignment
AT2G42710.1 Ribosomal protein L1p/L10e family2.3e-0551.22Show/hide
Query:  EAKNAGADLVGGEDLIEQI-KGGFMEFDKLISSPDMMPKTF
        +AK AGAD+VGG +LIE+I K G ++FD+ +++P MMP+ +
Subjt:  EAKNAGADLVGGEDLIEQI-KGGFMEFDKLISSPDMMPKTF
AT3G63490.1 Ribosomal protein L1p/L10e family3.0e-1380.95Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        EK +EAK+AGAD+VG +DLIEQIKGGFMEFDKLI+SPDMM K
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
AT3G63490.2 Ribosomal protein L1p/L10e family3.0e-1380.95Show/hide
Query:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK
        EK +EAK+AGAD+VG +DLIEQIKGGFMEFDKLI+SPDMM K
Subjt:  EKFNEAKNAGADLVGGEDLIEQIKGGFMEFDKLISSPDMMPK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCTCACGCAAAAACCCTCCATCTTCGTCGTCTCCTCCCATTCCCGTGTCCTCCCTCAACGCCGTCGGCTGCCGCTGCTACACTTAACTTCTCCGTCTTTGAACGC
CACCAGCTGCTACTACCGTTTGGGTTCGGACACCGCTGCTACCGTTTCGGTTCAAACACCGCGTCTCCTCTCCCTCAACACCACTGCTACCATTTTAGTTCGAACGTCGC
GTCTCTTCTCCCTCAACACCGCTACTACCCTTTGTGAAAAATTCAACGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGATCAAAGGA
GGTTTCATGGAATTTGATAAGTTGATTTCTTCACCAGATATGATGCCCAAGACTTTCAACTGA
mRNA sequenceShow/hide mRNA sequence
CTCCCTAATGCTCCTCACGCAAAAACCCTCCATCTTCGTCGTCTCCTCCCATTCCCGTGTCCTCCCTCAACGCCGTCGGCTGCCGCTGCTACACTTAACTTCTCCGTCTT
TGAACGCCACCAGCTGCTACTACCGTTTGGGTTCGGACACCGCTGCTACCGTTTCGGTTCAAACACCGCGTCTCCTCTCCCTCAACACCACTGCTACCATTTTAGTTCGA
ACGTCGCGTCTCTTCTCCCTCAACACCGCTACTACCCTTTGTGAAAAATTCAACGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGAT
CAAAGGAGGTTTCATGGAATTTGATAAGTTGATTTCTTCACCAGATATGATGCCCAAGACTTTCAACTGATGGAAAGGATTTCTTCACTTCATACAATGAAGTTTATGAC
AGTTTTGATTTTATGGGCCTATAAGAAAATTAAACCTTCTCAGAGGGATCTATGCCTACGGTTTTGAGAAGTCATCCGCAATTCAATAAAGGAGAATTGTTCCTCTTCGC
AAAGGGCTTGATGTAATCCAACAAGCCCAGTCTAGAATTGGGAAGACTGCAACTTTTTGCTCCAACATTTTTCAGCAACTTGATTATGGTCTTGTGCAGTGCCAAGCATG
TTACTTCCATTTAATGTTTGTATTCTGTTAATGAATAAGCTAATTTTAGAACTTGGTTATTATATTGAGGAGCTAAGCAAACACAAGGTGCTATAAAGAAATTTGTCAAT
TCCAAGTATTTTCCAACTATTCTACTATGTGCTGGGTGCACTATTGTACAGTTAAATTCAAAGTAAGAGTTCTTTTCCAACTACTCTATTGCTTACTATTGAGTTGCAAT
TATTCGAGTCTCTTTCTTGTTCTTATTGTATATTCAAGATGCTTCTTGCAACCAGAAATGCCATGAAATTTCTTCATAACTAACTTTTTTGCATTTTCAATTCCTAACTC
AATTCCTCTATGATGACTATATTTATTAATTAATAGATAGTTGTTCCAAGTTTTATTTTGTGTTTATAACTATTAAATGCATTATATATTTACATTTTCTTTGCAGCTCC
GATCATGTTCTTCAGACAC
Protein sequenceShow/hide protein sequence
MLLTQKPSIFVVSSHSRVLPQRRRLPLLHLTSPSLNATSCYYRLGSDTAATVSVQTPRLLSLNTTATILVRTSRLFSLNTATTLCEKFNEAKNAGADLVGGEDLIEQIKG
GFMEFDKLISSPDMMPKTFN