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Pay0020281 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0020281
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr05:27268268..27269258
RNA-Seq ExpressionPay0020281
SyntenyPay0020281
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.5e-4733.64Show/hide
Query:  KKIHKGEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI---------------------
        + + KG++P     SSS +PW +I    + F +++SWKI+NG + SFW+ +W+ N+ L   +PRL+ALS +KE SI+D+                     
Subjt:  KKIHKGEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI---------------------

Query:  -------------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQ-AYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPN
                           D+P+W LN N  ++V SVK ++  QP      F  Q  + NLWKT IPKKC FF+WTL+ D V T +++  RL +LC  P+
Subjt:  -------------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQ-AYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPN

Query:  WCVLCRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHA
        WCV+C+++ E   H+F+ C                                        +I FN   + +W+IWLERN +IF G       IWE I   A
Subjt:  WCVLCRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHA

Query:  TIWLSKDKIFKNYFSSSIALNLHA
         +W S+  +F NY +SSIALNL+A
Subjt:  TIWLSKDKIFKNYFSSSIALNLHA

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-4934.91Show/hide
Query:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------
        G  PS  K SS+N+PWKA+T     F KN+SWK+ +G+ +SFW  NWNGNA L +  PRLFALS +K+GS+K+                           
Subjt:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------

Query:  --------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVLCR
                        P+W LN N  F   SVK +I   P + A +F P  Y  LWK + PKKCKFF+WTLI+  + T D++  RL +   +PNWC +C 
Subjt:  --------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVLCR

Query:  KDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWLSK
        K  E  +H+F+ C                                        LI+FN    ++W IWLERN +IFK      + +WE       +W  K
Subjt:  KDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWLSK

Query:  DKIFKNYFSSSIALNLHA
         K+F NY   SIALN+ A
Subjt:  DKIFKNYFSSSIALNLHA

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.6e-4934.69Show/hide
Query:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------
        G  PS+ K SS+N+PWKA+T+    F KN+ WK+ +G+ +SFW  NWNGN+ L +  PRLFALS +K+GS+KD+                          
Subjt:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------

Query:  --------------DTPVWRLNKNQSFSVKSVK--FSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVL
                        P+W+LN N  F   S+K   S     PT   +F P  Y  LWK   PKKCKFF+WTLI+  + T D++  RL +   +PNWC +
Subjt:  --------------DTPVWRLNKNQSFSVKSVK--FSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVL

Query:  CRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWL
        C K  E  +H+F+ C                                        LI+FN +  L+W IWLERN +IFK      + +WE I     +W 
Subjt:  CRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWL

Query:  SKDKIFKNYFSSSIALNLHA
         K K+F NY   SIALN+ A
Subjt:  SKDKIFKNYFSSSIALNLHA

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-4934.69Show/hide
Query:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------
        G  PS+ K SS+N+PWKA+T+    F KN+ WK+ +G+ +SFW  NWNGN+ L +  PRLFALS +K+GS+KD+                          
Subjt:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------

Query:  --------------DTPVWRLNKNQSFSVKSVK--FSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVL
                        P+W+LN N  F   S+K   S     PT   +F P  Y  LWK   PKKCKFF+WTLI+  + T D++  RL +   +PNWC +
Subjt:  --------------DTPVWRLNKNQSFSVKSVK--FSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVL

Query:  CRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWL
        C K  E  +H+F+ C                                        LI+FN +  L+W IWLERN +IFK      + +WE I     +W 
Subjt:  CRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWL

Query:  SKDKIFKNYFSSSIALNLHA
         K K+F NY   SIALN+ A
Subjt:  SKDKIFKNYFSSSIALNLHA

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]7.5e-4733.64Show/hide
Query:  KKIHKGEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI---------------------
        + + KG++P     SSS +PW +I    + F +++SWKI+NG + SFW+ +W+ N+ L   +PRL+ALS +KE SI+D+                     
Subjt:  KKIHKGEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI---------------------

Query:  -------------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQ-AYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPN
                           D+P+W LN N  ++V SVK ++  QP      F  Q  + NLWKT IPKKC FF+WTL+ D V T +++  RL +LC  P+
Subjt:  -------------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQ-AYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPN

Query:  WCVLCRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHA
        WCV+C+++ E   H+F+ C                                        +I FN   + +W+IWLERN +IF G       IWE I   A
Subjt:  WCVLCRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHA

Query:  TIWLSKDKIFKNYFSSSIALNLHA
         +W S+  +F NY +SSIALNL+A
Subjt:  TIWLSKDKIFKNYFSSSIALNLHA

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein3.6e-4733.64Show/hide
Query:  KKIHKGEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI---------------------
        + + KG++P     SSS +PW +I    + F +++SWKI+NG + SFW+ +W+ N+ L   +PRL+ALS +KE SI+D+                     
Subjt:  KKIHKGEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI---------------------

Query:  -------------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQ-AYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPN
                           D+P+W LN N  ++V SVK ++  QP      F  Q  + NLWKT IPKKC FF+WTL+ D V T +++  RL +LC  P+
Subjt:  -------------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQ-AYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPN

Query:  WCVLCRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHA
        WCV+C+++ E   H+F+ C                                        +I FN   + +W+IWLERN +IF G       IWE I   A
Subjt:  WCVLCRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHA

Query:  TIWLSKDKIFKNYFSSSIALNLHA
         +W S+  +F NY +SSIALNL+A
Subjt:  TIWLSKDKIFKNYFSSSIALNLHA

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.3e-4934.91Show/hide
Query:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------
        G  PS  K SS+N+PWKA+T     F KN+SWK+ +G+ +SFW  NWNGNA L +  PRLFALS +K+GS+K+                           
Subjt:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------

Query:  --------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVLCR
                        P+W LN N  F   SVK +I   P + A +F P  Y  LWK + PKKCKFF+WTLI+  + T D++  RL +   +PNWC +C 
Subjt:  --------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVLCR

Query:  KDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWLSK
        K  E  +H+F+ C                                        LI+FN    ++W IWLERN +IFK      + +WE       +W  K
Subjt:  KDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWLSK

Query:  DKIFKNYFSSSIALNLHA
         K+F NY   SIALN+ A
Subjt:  DKIFKNYFSSSIALNLHA

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.7e-4934.69Show/hide
Query:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------
        G  PS+ K SS+N+PWKA+T+    F KN+ WK+ +G+ +SFW  NWNGN+ L +  PRLFALS +K+GS+KD+                          
Subjt:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------

Query:  --------------DTPVWRLNKNQSFSVKSVK--FSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVL
                        P+W+LN N  F   S+K   S     PT   +F P  Y  LWK   PKKCKFF+WTLI+  + T D++  RL +   +PNWC +
Subjt:  --------------DTPVWRLNKNQSFSVKSVK--FSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVL

Query:  CRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWL
        C K  E  +H+F+ C                                        LI+FN +  L+W IWLERN +IFK      + +WE I     +W 
Subjt:  CRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWL

Query:  SKDKIFKNYFSSSIALNLHA
         K K+F NY   SIALN+ A
Subjt:  SKDKIFKNYFSSSIALNLHA

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.0e-4934.69Show/hide
Query:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------
        G  PS+ K SS+N+PWKA+T+    F KN+ WK+ +G+ +SFW  NWNGN+ L +  PRLFALS +K+GS+KD+                          
Subjt:  GEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI--------------------------

Query:  --------------DTPVWRLNKNQSFSVKSVK--FSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVL
                        P+W+LN N  F   S+K   S     PT   +F P  Y  LWK   PKKCKFF+WTLI+  + T D++  RL +   +PNWC +
Subjt:  --------------DTPVWRLNKNQSFSVKSVK--FSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVL

Query:  CRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWL
        C K  E  +H+F+ C                                        LI+FN +  L+W IWLERN +IFK      + +WE I     +W 
Subjt:  CRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHATIWL

Query:  SKDKIFKNYFSSSIALNLHA
         K K+F NY   SIALN+ A
Subjt:  SKDKIFKNYFSSSIALNLHA

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein3.6e-4733.64Show/hide
Query:  KKIHKGEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI---------------------
        + + KG++P     SSS +PW +I    + F +++SWKI+NG + SFW+ +W+ N+ L   +PRL+ALS +KE SI+D+                     
Subjt:  KKIHKGEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDI---------------------

Query:  -------------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQ-AYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPN
                           D+P+W LN N  ++V SVK ++  QP      F  Q  + NLWKT IPKKC FF+WTL+ D V T +++  RL +LC  P+
Subjt:  -------------------DTPVWRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQ-AYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPN

Query:  WCVLCRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHA
        WCV+C+++ E   H+F+ C                                        +I FN   + +W+IWLERN +IF G       IWE I   A
Subjt:  WCVLCRKDSETGSHVFLSC----------------------------------------LISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHA

Query:  TIWLSKDKIFKNYFSSSIALNLHA
         +W S+  +F NY +SSIALNL+A
Subjt:  TIWLSKDKIFKNYFSSSIALNLHA

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.5e-0526.42Show/hide
Query:  WRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVLCRKDSETGSHVFLSCLISFN
        W+ +++  FSV+S    + +    R +      +  LWK ++P++ K F+W + N  V+T ++ H R  S     N C +C+   E+  HV   C     
Subjt:  WRLNKNQSFSVKSVKFSICMQPPTRAHSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVLCRKDSETGSHVFLSCLISFN

Query:  IMVALM
        I V ++
Subjt:  IMVALM

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAAATCCACAAGGGAGAAGTGCCTAGTCAAAGCAAGATTAGCAGCTCCAATGCTCCATGGAAGGCCATCACAAGCAGGTACCAATTGTTCAATAAGAACTTAAG
TTGGAAAATTCAAAATGGTGATACATTATCCTTCTGGAATCACAATTGGAATGGTAATGCTTCTCTAAAAATCAGATTCCCTAGGCTCTTTGCTCTTTCTAGATCAAAAG
AAGGATCCATCAAAGATATAGATACCCCGGTTTGGAGGCTAAATAAAAATCAAAGCTTCTCTGTTAAATCAGTGAAATTTTCTATTTGCATGCAACCGCCAACCCGCGCA
CATAGCTTTGATCCACAAGCCTACACAAATCTTTGGAAAACAAAAATCCCCAAAAAGTGCAAATTTTTTGTATGGACTTTGATTAATGATGGAGTTCTAACCACTGATAA
AATCCATATGAGGTTGAAATCTTTGTGTCCTAATCCAAACTGGTGTGTATTGTGTAGGAAAGATAGTGAAACGGGAAGCCATGTTTTTCTATCCTGTCTTATCTCCTTCA
ACATTATGGTGGCTCTCATGTGGTCAATTTGGTTGGAAAGAAATAGAAAAATTTTCAAGGGATTGTTAATAAACTCTGAAACCATCTGGGAATCTATCTGCAACCATGCA
ACTATTTGGCTTTCTAAAGACAAGATCTTTAAGAATTACTTCTCTTCCTCTATAGCTTTAAATTTACATGCTCTATATAACTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAAATCCACAAGGGAGAAGTGCCTAGTCAAAGCAAGATTAGCAGCTCCAATGCTCCATGGAAGGCCATCACAAGCAGGTACCAATTGTTCAATAAGAACTTAAG
TTGGAAAATTCAAAATGGTGATACATTATCCTTCTGGAATCACAATTGGAATGGTAATGCTTCTCTAAAAATCAGATTCCCTAGGCTCTTTGCTCTTTCTAGATCAAAAG
AAGGATCCATCAAAGATATAGATACCCCGGTTTGGAGGCTAAATAAAAATCAAAGCTTCTCTGTTAAATCAGTGAAATTTTCTATTTGCATGCAACCGCCAACCCGCGCA
CATAGCTTTGATCCACAAGCCTACACAAATCTTTGGAAAACAAAAATCCCCAAAAAGTGCAAATTTTTTGTATGGACTTTGATTAATGATGGAGTTCTAACCACTGATAA
AATCCATATGAGGTTGAAATCTTTGTGTCCTAATCCAAACTGGTGTGTATTGTGTAGGAAAGATAGTGAAACGGGAAGCCATGTTTTTCTATCCTGTCTTATCTCCTTCA
ACATTATGGTGGCTCTCATGTGGTCAATTTGGTTGGAAAGAAATAGAAAAATTTTCAAGGGATTGTTAATAAACTCTGAAACCATCTGGGAATCTATCTGCAACCATGCA
ACTATTTGGCTTTCTAAAGACAAGATCTTTAAGAATTACTTCTCTTCCTCTATAGCTTTAAATTTACATGCTCTATATAACTCCTAA
Protein sequenceShow/hide protein sequence
MKKIHKGEVPSQSKISSSNAPWKAITSRYQLFNKNLSWKIQNGDTLSFWNHNWNGNASLKIRFPRLFALSRSKEGSIKDIDTPVWRLNKNQSFSVKSVKFSICMQPPTRA
HSFDPQAYTNLWKTKIPKKCKFFVWTLINDGVLTTDKIHMRLKSLCPNPNWCVLCRKDSETGSHVFLSCLISFNIMVALMWSIWLERNRKIFKGLLINSETIWESICNHA
TIWLSKDKIFKNYFSSSIALNLHALYNS