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Pay0020489 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0020489
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr09:11265159..11266538
RNA-Seq ExpressionPay0020489
SyntenyPay0020489
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047513.1 hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa]1.2e-5882.89Show/hide
Query:  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI
        MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI
Subjt:  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI

Query:  IQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTKRIS
        IQLFSAFNEADA             +  TA   KV  SVP  A+TPLT+ IS
Subjt:  IQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTKRIS

KGN45637.1 hypothetical protein Csa_005027 [Cucumis sativus]3.6e-3954.6Show/hide
Query:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI
        MFSIKID + P L+   LF ++ + +ICLKF  ST SII RYQ P F  M+ +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I
Subjt:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI

Query:  FLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADASN
         L FE S  S +P+ R++ F VPMEDWS G + FD K FSIES+LF DII  F  +NE D SN
Subjt:  FLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADASN

KGN61523.1 hypothetical protein Csa_006491 [Cucumis sativus]3.6e-2351.16Show/hide
Query:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI
        MFSIK+D++ PFL+ T LF E  + EICLKF  ST S+I RYQ P F  M+ MP PLF EYSVDRNHIS +SL    NAL++G+++++++I + E QN I
Subjt:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI

Query:  FLTFEASSPSTLPLNR--ELTF-VVPMED
           FE   PS L  +R  ++TF  VP E+
Subjt:  FLTFEASSPSTLPLNR--ELTF-VVPMED

TYK26483.1 hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa]7.6e-5883.22Show/hide
Query:  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI
        MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI
Subjt:  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI

Query:  IQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTK
        IQLFSAFNEADA             +  TA   KV  SVP  A+TPLT+
Subjt:  IQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTK

XP_031736681.1 uncharacterized protein LOC116402062 [Cucumis sativus]1.8e-5964.65Show/hide
Query:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI
        MFSIKIDDI PFL+ TILF ELTH EICLKFL ST+SIIVRY+ PIF V MS+PQPLF EYSVDRNHIS +SL   ++AL++ +TFA LNI ++E+QNKI
Subjt:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI

Query:  FLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTK
         LTFE SSPSTLPLNRELTFVVPMEDWS   V FDGK+FSIES+LF DIIQLFS+F EA             N +   +   KV  S+   A+TPLT+
Subjt:  FLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTK

TrEMBL top hitse value%identityAlignment
A0A0A0K902 Uncharacterized protein7.3e-1433.94Show/hide
Query:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI
        MF +K+ +  P L+ T  F +++  +  +KF  S   II  ++SP FI  + +    F  +SVD +H S VSL   H+A++DG +FA++ I + ++ N+I
Subjt:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI

Query:  FLTFEASSPSTLPLNRELTFVVPM-EDWSPGPVKFD-GKIFSIESELFTDIIQLFSAFNEADASN
         L F+  S    PL+ EL    P  ED   G  + D GK F ++S+    II+    F + D+SN
Subjt:  FLTFEASSPSTLPLNRELTFVVPM-EDWSPGPVKFD-GKIFSIESELFTDIIQLFSAFNEADASN

A0A0A0KB76 Uncharacterized protein1.7e-3954.6Show/hide
Query:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI
        MFSIKID + P L+   LF ++ + +ICLKF  ST SII RYQ P F  M+ +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I
Subjt:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI

Query:  FLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADASN
         L FE S  S +P+ R++ F VPMEDWS G + FD K FSIES+LF DII  F  +NE D SN
Subjt:  FLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADASN

A0A0A0LIE0 Uncharacterized protein1.7e-2351.16Show/hide
Query:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI
        MFSIK+D++ PFL+ T LF E  + EICLKF  ST S+I RYQ P F  M+ MP PLF EYSVDRNHIS +SL    NAL++G+++++++I + E QN I
Subjt:  MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKI

Query:  FLTFEASSPSTLPLNR--ELTF-VVPMED
           FE   PS L  +R  ++TF  VP E+
Subjt:  FLTFEASSPSTLPLNR--ELTF-VVPMED

A0A5A7TVD7 Uncharacterized protein5.7e-5982.89Show/hide
Query:  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI
        MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI
Subjt:  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI

Query:  IQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTKRIS
        IQLFSAFNEADA             +  TA   KV  SVP  A+TPLT+ IS
Subjt:  IQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTKRIS

A0A5D3DSC2 Uncharacterized protein3.7e-5883.22Show/hide
Query:  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI
        MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI
Subjt:  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDI

Query:  IQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTK
        IQLFSAFNEADA             +  TA   KV  SVP  A+TPLT+
Subjt:  IQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTATCAAGATTGATGACATTTATCCTTTCCTAGAGACAACCATCCTATTTGTTGAACTTACACACAAGGAAATCTGCCTTAAATTTTTGCAGTCGACGTTGTC
GATAATTGTTCGGTACCAAAGTCCTATTTTCATTGTAATGATGTCTATGCCGCAACCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCAATTGTTTCCCTTC
CGCCCTTGCACAATGCTTTGGTTGATGGCGAAACTTTTGCTACACTGAACATCTCTATTGAGGAAGAGCAGAATAAAATATTTCTTACATTTGAGGCTTCAAGTCCTTCA
ACATTACCATTGAATCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTCCTGGACCAGTTAAATTTGATGGAAAAATTTTCTCTATTGAGTCAGAACTGTTTAC
CGATATTATCCAACTATTTTCTGCCTTCAATGAAGCTGATGCAAGTAATGCAAATCTTTTTCCATATATTTACTTTAACAAAATGTTTGATACTGCATTGCTTCAAAAAG
TTCACCTCTCAGTTCCTTCCATTGCCAAGACACCTCTTACCAAGAGGATAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTATCAAGATTGATGACATTTATCCTTTCCTAGAGACAACCATCCTATTTGTTGAACTTACACACAAGGAAATCTGCCTTAAATTTTTGCAGTCGACGTTGTC
GATAATTGTTCGGTACCAAAGTCCTATTTTCATTGTAATGATGTCTATGCCGCAACCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCAATTGTTTCCCTTC
CGCCCTTGCACAATGCTTTGGTTGATGGCGAAACTTTTGCTACACTGAACATCTCTATTGAGGAAGAGCAGAATAAAATATTTCTTACATTTGAGGCTTCAAGTCCTTCA
ACATTACCATTGAATCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTCCTGGACCAGTTAAATTTGATGGAAAAATTTTCTCTATTGAGTCAGAACTGTTTAC
CGATATTATCCAACTATTTTCTGCCTTCAATGAAGCTGATGCAAGTAATGCAAATCTTTTTCCATATATTTACTTTAACAAAATGTTTGATACTGCATTGCTTCAAAAAG
TTCACCTCTCAGTTCCTTCCATTGCCAAGACACCTCTTACCAAGAGGATAAGCTGA
Protein sequenceShow/hide protein sequence
MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS
TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADASNANLFPYIYFNKMFDTALLQKVHLSVPSIAKTPLTKRIS