| GenBank top hits | e value | %identity | Alignment |
|---|
| AAK84483.1 putative copia-like polyprotein [Solanum lycopersicum] | 5.3e-74 | 46.59 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSS-
+G+KW+FVRKRN+ EV RYKARLVAQ FSQRPGIDY ETYSPVVDAIT +YLI+L V + L+M LMDVVTAYLYGSL++ I+MKI E FK+ E+Y S
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSS-
Query: ------------------------------------------------------------------------------SREL------------------
RE
Subjt: ------------------------------------------------------------------------------SREL------------------
Query: ------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFSVNLLARY-------SQIKG
SH L+ PMVVRSLD+ D FRP+E++EELLG E PYL+AIGALMYL NNTRPDI F+ Y +Q+KG
Subjt: ------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFSVNLLARY-------SQIKG
Query: GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLREVK
GYIKGDRTKHISPK F+THDL++NG+I VQQI S DNLADLFTKALPTSTFEKL + IGMRRLR++K
Subjt: GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLREVK
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| CAN83366.1 hypothetical protein VITISV_041663 [Vitis vinifera] | 1.1e-68 | 53.33 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDV-----------VTAYLYGSLENEIYMK----
+G+KWVFVRKRN+NNE+ RYKARLVAQ FSQRPGIDYEETYSPV+DAIT ++L S T + +++ D+ T YL E + K
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDV-----------VTAYLYGSLENEIYMK----
Query: -------------IHEGFKILESYNSSSRELSHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFS------------
+H+ I + + +H L+ PMVVRSLDVKKD FRP E +EELLGPEVPYL+AIGALMYLAN TRPDI+FS
Subjt: -------------IHEGFKILESYNSSSRELSHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFS------------
Query: -------VNLLARYSQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLREV
+ A +QI GGYIKGDRTKHISPK FYTH+L+++G+I VQQI S DNLADLFTK+LPTSTF+KL+H IGMR+L+++
Subjt: -------VNLLARYSQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLREV
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| RVW14192.1 Copia protein [Vitis vinifera] | 3.1e-74 | 41.78 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+NNE+ RYKARLVAQ FSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+ ++ N+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: REL----------------------------------------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNA
R + +H L+ PMV RSLDVKKD FRP E +EELLGPEVPYL+A
Subjt: REL----------------------------------------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNA
Query: IGALMYLANNTRPDISFSVNLLARYS--------------------------------------------------------------------------
IGALMYLAN TRPDI+FSVNLLARYS
Subjt: IGALMYLANNTRPDISFSVNLLARYS--------------------------------------------------------------------------
Query: --------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLAD
QI GGYIKGDRTKHISPK FYTH+L+++G+I VQQI S DNLAD
Subjt: --------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLAD
Query: LFTKALPTSTFEKLVHNIGMRRLREV
LFTK+LPTSTF+KL+H IGMR+L+++
Subjt: LFTKALPTSTFEKLVHNIGMRRLREV
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| RVW19132.1 Copia protein [Vitis vinifera] | 2.6e-73 | 41.11 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+NNE+ RYKARLVAQ FSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+ ++ N+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: -----------------------------------------------------------------RELSHLLNIPMVVRSLDVKKDIFRPREDNEELLGP
+ +H L+ PMVVRSLDVKKD FRP E +EELLGP
Subjt: -----------------------------------------------------------------RELSHLLNIPMVVRSLDVKKDIFRPREDNEELLGP
Query: EVPYLNAIGALMYLANNTRPDISFSVNLLARYS-------------------------------------------------------------------
EVPYL+AIGALMYLAN TRPDI+FSVNLLARYS
Subjt: EVPYLNAIGALMYLANNTRPDISFSVNLLARYS-------------------------------------------------------------------
Query: ---------------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQIS
QI GGYIKGDRTKHISPK FYTH+L+++G+I VQQI
Subjt: ---------------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQIS
Query: SKDNLADLFTKALPTSTFEKLVHNIGMRRLREV
S DNLADLFTK+LPTSTF+KL+H IGMR+L+++
Subjt: SKDNLADLFTKALPTSTFEKLVHNIGMRRLREV
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| RVW59189.1 Copia protein [Vitis vinifera] | 1.3e-72 | 41.44 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKI--------
+G+KWVFVRKRN+NNE+ RYKARLVAQ FSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKI--------
Query: ----------------LESYNSSSREL----------------------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPE
+Y E+ +H L+ PMVVRSLDVKKD FRP E +EELLGPE
Subjt: ----------------LESYNSSSREL----------------------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPE
Query: VPYLNAIGALMYLANNTRPDISFSVNLLARYS--------------------------------------------------------------------
VPYL+AIGALMYLAN TRPDI+FSVNLLARYS
Subjt: VPYLNAIGALMYLANNTRPDISFSVNLLARYS--------------------------------------------------------------------
Query: --------------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISS
QI GGYIKGDRTKHISPK FYTH+L+++G+I VQQI S
Subjt: --------------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISS
Query: KDNLADLFTKALPTSTFEKLVHNIGMRRLREV
DNLADLFTK+LPTSTF+KL+H IGMR+L+++
Subjt: KDNLADLFTKALPTSTFEKLVHNIGMRRLREV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2N9J4G7 Reverse transcriptase Ty1/copia-type domain-containing protein | 2.5e-69 | 36.94 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+ NE+ RYKARLVAQ FSQRPGIDYEETYSPV+DAIT ++LISL V +NLDM LMDVVTAYLYGSL+N+IYMKI EG+K+ E+YNS S
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: REL-------------------------------------------------------------------------------------------------
R +
Subjt: REL-------------------------------------------------------------------------------------------------
Query: -------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFSVNLLARYS----------
+H L+ PMVVRSLDVKKD FRP+E EE LGPEVPYL+AIGALMYLAN TRPDI+FSVNLLARYS
Subjt: -------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFSVNLLARYS----------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLREV
QI+GGYIKGDRTKHISPK FYTH+L+++GDI V+QI S +NLAD+FTK+LPT+TF+K+VH+IGMRRL+++
Subjt: --------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLREV
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| A0A438BTB5 Copia protein | 1.5e-74 | 41.78 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+NNE+ RYKARLVAQ FSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+ ++ N+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: REL----------------------------------------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNA
R + +H L+ PMV RSLDVKKD FRP E +EELLGPEVPYL+A
Subjt: REL----------------------------------------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNA
Query: IGALMYLANNTRPDISFSVNLLARYS--------------------------------------------------------------------------
IGALMYLAN TRPDI+FSVNLLARYS
Subjt: IGALMYLANNTRPDISFSVNLLARYS--------------------------------------------------------------------------
Query: --------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLAD
QI GGYIKGDRTKHISPK FYTH+L+++G+I VQQI S DNLAD
Subjt: --------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLAD
Query: LFTKALPTSTFEKLVHNIGMRRLREV
LFTK+LPTSTF+KL+H IGMR+L+++
Subjt: LFTKALPTSTFEKLVHNIGMRRLREV
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| A0A438C7B8 Copia protein | 1.3e-73 | 41.11 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
+G+KWVFVRKRN+NNE+ RYKARLVAQ FSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+ ++ N+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSS
Query: -----------------------------------------------------------------RELSHLLNIPMVVRSLDVKKDIFRPREDNEELLGP
+ +H L+ PMVVRSLDVKKD FRP E +EELLGP
Subjt: -----------------------------------------------------------------RELSHLLNIPMVVRSLDVKKDIFRPREDNEELLGP
Query: EVPYLNAIGALMYLANNTRPDISFSVNLLARYS-------------------------------------------------------------------
EVPYL+AIGALMYLAN TRPDI+FSVNLLARYS
Subjt: EVPYLNAIGALMYLANNTRPDISFSVNLLARYS-------------------------------------------------------------------
Query: ---------------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQIS
QI GGYIKGDRTKHISPK FYTH+L+++G+I VQQI
Subjt: ---------------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQIS
Query: SKDNLADLFTKALPTSTFEKLVHNIGMRRLREV
S DNLADLFTK+LPTSTF+KL+H IGMR+L+++
Subjt: SKDNLADLFTKALPTSTFEKLVHNIGMRRLREV
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| A0A438FGR3 Copia protein | 6.3e-73 | 41.44 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKI--------
+G+KWVFVRKRN+NNE+ RYKARLVAQ FSQRPGIDYEETYSPV+DAIT ++LISL V + LDM LMDV+TAYLYGS++N+IYMKI EGFK+
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKI--------
Query: ----------------LESYNSSSREL----------------------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPE
+Y E+ +H L+ PMVVRSLDVKKD FRP E +EELLGPE
Subjt: ----------------LESYNSSSREL----------------------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPE
Query: VPYLNAIGALMYLANNTRPDISFSVNLLARYS--------------------------------------------------------------------
VPYL+AIGALMYLAN TRPDI+FSVNLLARYS
Subjt: VPYLNAIGALMYLANNTRPDISFSVNLLARYS--------------------------------------------------------------------
Query: --------------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISS
QI GGYIKGDRTKHISPK FYTH+L+++G+I VQQI S
Subjt: --------------------------------------------------------------QIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISS
Query: KDNLADLFTKALPTSTFEKLVHNIGMRRLREV
DNLADLFTK+LPTSTF+KL+H IGMR+L+++
Subjt: KDNLADLFTKALPTSTFEKLVHNIGMRRLREV
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| Q949J4 Putative copia-like polyprotein | 2.6e-74 | 46.59 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSS-
+G+KW+FVRKRN+ EV RYKARLVAQ FSQRPGIDY ETYSPVVDAIT +YLI+L V + L+M LMDVVTAYLYGSL++ I+MKI E FK+ E+Y S
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSS-
Query: ------------------------------------------------------------------------------SREL------------------
RE
Subjt: ------------------------------------------------------------------------------SREL------------------
Query: ------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFSVNLLARY-------SQIKG
SH L+ PMVVRSLD+ D FRP+E++EELLG E PYL+AIGALMYL NNTRPDI F+ Y +Q+KG
Subjt: ------------------------SHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFSVNLLARY-------SQIKG
Query: GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLREVK
GYIKGDRTKHISPK F+THDL++NG+I VQQI S DNLADLFTKALPTSTFEKL + IGMRRLR++K
Subjt: GYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLREVK
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.0e-15 | 47.67 | Show/hide |
Query: KWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEG
+WVF K N+ RYKARLVA+ F+Q+ IDYEET++PV + ++++SL + NL +H MDV TA+L G+L+ EIYM++ +G
Subjt: KWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEG
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| P04146 Copia protein | 8.6e-03 | 35.19 | Show/hide |
Query: RTKHISPKLFYTHDLEENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGM
R KHI K + + +N I ++ I +++ LAD+FTK LP + F +L +G+
Subjt: RTKHISPKLFYTHDLEENGDISVQQISSKDNLADLFTKALPTSTFEKLVHNIGM
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.0e-16 | 37.5 | Show/hide |
Query: KWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSSREL
KWVF K++ + ++ RYKARLV + F Q+ GID++E +SPVV +++ ++SL +L++ +DV TA+L+G LE EIYM+ EGF++ + +
Subjt: KWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGFKILESYNSSSREL
Query: SHLLNIPMVVRSLDVKKDIF
L + R +K D F
Subjt: SHLLNIPMVVRSLDVKKDIF
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 8.4e-06 | 44.64 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISL
+G KWVF K + + + R KARLVA+ F Q GI + ETYSPVV T++ ++++
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISL
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 3.4e-15 | 38.89 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGF
+G +W+F +K N + + RYKARLVA+ ++QRPG+DY ET+SPV+ + +++ ++ + V ++ + +DV A+L G+L +++YM GF
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGF
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.0e-15 | 40 | Show/hide |
Query: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGF
+G +W+F +K N + + RYKARLVA+ ++QRPG+DY ET+SPV+ + +++ ++ + V ++ + +DV A+L G+L +E+YM GF
Subjt: MGFKWVFVRKRNKNNEVTRYKARLVAQRFSQRPGIDYEETYSPVVDAITLKYLISLTVCKNLDMHLMDVVTAYLYGSLENEIYMKIHEGF
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