| GenBank top hits | e value | %identity | Alignment |
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| KAA0032467.1 pol protein [Cucumis melo var. makuwa] | 5.3e-70 | 62.96 | Show/hide |
Query: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
MSEIVRLHGV VSI DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTERLNQ
Subjt: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
Query: ---------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAR
RI PVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt: ---------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAR
Query: EVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
E+KMLRNREI LVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt: EVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
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| KAA0046059.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 8.2e-71 | 63.75 | Show/hide |
Query: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
MS+IVRLHGVPVSI+SDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ
Subjt: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
Query: -----------------------------------RIGPV-AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK
++ P+ AYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLAREVK
Subjt: -----------------------------------RIGPV-AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK
Query: MLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
MLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt: MLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
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| KAA0053361.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.8e-70 | 63.01 | Show/hide |
Query: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQ
Subjt: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
Query: ------------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEV
RI PV YRLALPPSLS VHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEV
Subjt: ------------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEV
Query: LAREVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
LAREVKMLRNREIPLVKVLWRNH VEEATWEREDDMRSRYPELFEE
Subjt: LAREVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
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| KAA0063336.1 pol protein [Cucumis melo var. makuwa] | 1.4e-70 | 59.62 | Show/hide |
Query: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ
Subjt: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
Query: -------------------------------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVD
RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVD
Subjt: -------------------------------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVD
Query: YEPLEIDENLSYTEQPVEVLAREVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
YEPLEIDENLSYTEQPVEVLAREVK LRN+EIPLVKVLWRNHRVEEATWEREDDMRSRY ELFEE
Subjt: YEPLEIDENLSYTEQPVEVLAREVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
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| TYK11938.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 3.1e-70 | 63.33 | Show/hide |
Query: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
MS+IVRLHGVPVSI+SDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ
Subjt: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
Query: -----------------------------------RIGPV-AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK
++ P+ AYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLAREVK
Subjt: -----------------------------------RIGPV-AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK
Query: MLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
MLRNREIPLVKVLWRNHRVEEATWERE+DMRSRYPELFEE
Subjt: MLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SSY8 Pol protein | 2.6e-70 | 62.96 | Show/hide |
Query: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
MSEIVRLHGV VSI DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTERLNQ
Subjt: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
Query: ---------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAR
RI PVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt: ---------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAR
Query: EVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
E+KMLRNREI LVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt: EVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
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| A0A5A7TXT7 Ty3-gypsy retrotransposon protein | 4.0e-71 | 63.75 | Show/hide |
Query: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
MS+IVRLHGVPVSI+SDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ
Subjt: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
Query: -----------------------------------RIGPV-AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK
++ P+ AYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLAREVK
Subjt: -----------------------------------RIGPV-AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK
Query: MLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
MLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt: MLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
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| A0A5A7UIH1 Ty3-gypsy retrotransposon protein | 8.8e-71 | 63.01 | Show/hide |
Query: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTA GTRLDFSTAFHPQTDGQTERLNQ
Subjt: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
Query: ------------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEV
RI PV YRLALPPSLS VHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEV
Subjt: ------------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEV
Query: LAREVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
LAREVKMLRNREIPLVKVLWRNH VEEATWEREDDMRSRYPELFEE
Subjt: LAREVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
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| A0A5A7VA78 Pol protein | 6.8e-71 | 59.62 | Show/hide |
Query: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ
Subjt: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
Query: -------------------------------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVD
RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVD
Subjt: -------------------------------------------------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVD
Query: YEPLEIDENLSYTEQPVEVLAREVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
YEPLEIDENLSYTEQPVEVLAREVK LRN+EIPLVKVLWRNHRVEEATWEREDDMRSRY ELFEE
Subjt: YEPLEIDENLSYTEQPVEVLAREVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
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| A0A5D3CLB5 Ty3-gypsy retrotransposon protein | 1.5e-70 | 63.33 | Show/hide |
Query: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
MS+IVRLHGVPVSI+SDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ
Subjt: MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ-------------------------------------------
Query: -----------------------------------RIGPV-AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK
++ P+ AYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLAREVK
Subjt: -----------------------------------RIGPV-AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVK
Query: MLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
MLRNREIPLVKVLWRNHRVEEATWERE+DMRSRYPELFEE
Subjt: MLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P0CT34 Transposon Tf2-1 polyprotein | 3.3e-06 | 30.97 | Show/hide |
Query: IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQRIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSH-VVDYEPLEI
++ G P I++D D FTS+ WK + FS + PQTDGQTER NQ + + R +T D H+S++++ + H P EI
Subjt: IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQRIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSH-VVDYEPLEI
Query: DENLSYTEQPVEV
S P+E+
Subjt: DENLSYTEQPVEV
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| P0CT41 Transposon Tf2-12 polyprotein | 3.3e-06 | 30.97 | Show/hide |
Query: IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQRIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSH-VVDYEPLEI
++ G P I++D D FTS+ WK + FS + PQTDGQTER NQ + + R +T D H+S++++ + H P EI
Subjt: IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQRIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSH-VVDYEPLEI
Query: DENLSYTEQPVEV
S P+E+
Subjt: DENLSYTEQPVEV
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| Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein | 1.1e-06 | 34 | Show/hide |
Query: IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQRIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEID
I HG P +I SDRD R T+ ++ L +G + S+A HPQTDGQ+ER Q + + R + ++ H V+ + Y P+ + P EID
Subjt: IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQRIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEID
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| Q99315 Transposon Ty3-G Gag-Pol polyprotein | 1.1e-06 | 34.95 | Show/hide |
Query: IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQRIGPVAYRLALPPSLSTVHDVFHVSMLR---KYVPDPSHVVDYEPL
I HG P +I SDRD R T+ ++ L +G + S+A HPQTDGQ+ER Q + + A ST +HV + + Y P+ + P
Subjt: IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQRIGPVAYRLALPPSLSTVHDVFHVSMLR---KYVPDPSHVVDYEPL
Query: EID
EID
Subjt: EID
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| Q9UR07 Transposon Tf2-11 polyprotein | 3.3e-06 | 30.97 | Show/hide |
Query: IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQRIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSH-VVDYEPLEI
++ G P I++D D FTS+ WK + FS + PQTDGQTER NQ + + R +T D H+S++++ + H P EI
Subjt: IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQRIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSH-VVDYEPLEI
Query: DENLSYTEQPVEV
S P+E+
Subjt: DENLSYTEQPVEV
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