CuGenDBv2

Gene ID	Pay0020652
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA/RNA polymerases superfamily protein
Genome location	chr09:12333114..12334473
RNA-Seq Expression	Pay0020652
Synteny	Pay0020652
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041696.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.1e-72

83.12

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Query:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ
        ML+ACVL  KG+WDTHL LMEFAYNN YQ SI +AP+EALYGRPCRTPVCWNEVGERKLVGPELVQ+ ++NIKLIRENL+IAQDR KSYADKRRR+L+FQ
Subjt:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ

Query:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTI
        +G+QVFLKLSPWRGV+RFGRKDPSHVLQ QP++LKEDLSY EE +QILDRKEQVLRNKTI
Subjt:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTI

KAA0044258.1 reverse transcriptase [Cucumis melo var. makuwa]

1.9e-72

82.5

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Query:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ
        ML+ACVL  KG+WDTHL LMEF+YNN YQ SIGMAP+EALYGRPCRTPVCWNEVGERKLVGPELVQ+ ++NIKLIRENL+ AQDR KSYADKRRR+L+FQ
Subjt:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ

Query:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTI
        +G+QVFLKLSPWRGV+RFGRKDPSHVLQ QP++LKEDLSY EE +QILD+KEQVLRNKTI
Subjt:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTI

KAA0062408.1 DNA/RNA polymerase superfamily protein [Cucumis melo var. makuwa]

5.0e-78

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Query:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ
        MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGM PFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDR+KSYA+KRRRDLKF+
Subjt:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ

Query:  IGEQVFLKLSPWRGVLRFGRK-----------------------------------------------DPSHVLQVQPIDLKEDLSYREEAIQILDRKEQ
        IGEQVFLKLSPWRGVLRFGRK                                               DPSHVLQVQPIDLKEDLSYREEA+QILDRKEQ
Subjt:  IGEQVFLKLSPWRGVLRFGRK-----------------------------------------------DPSHVLQVQPIDLKEDLSYREEAIQILDRKEQ

Query:  VLRNKTIR
        VLRNKTIR
Subjt:  VLRNKTIR

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

7.3e-85

85.19

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Query:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ
        ML+ACVL FKGNWDTH SLMEFAYNN YQ S+GMAPFEALYGRPCRTPVCWNEVGERKLVG ELVQV SDNIKLIRENLKIA+DR KSYADK+RRDL+FQ
Subjt:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ

Query:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTIRKLEGFLVFSDDLSILEVHKSNQKLYLVW
        IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPI+LK+DL YR+EAIQILDRKEQ     +  K  GFLVFSD LSILEVHKSNQKLYL+W
Subjt:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTIRKLEGFLVFSDDLSILEVHKSNQKLYLVW

XP_016903070.1 PREDICTED: uncharacterized protein LOC107992029 [Cucumis melo]

2.0e-90

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Query:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ
        ML+ACVL FKGNWDTH SLMEFAYNN YQ S+GMAPFEALYGRPCRTPVCWNEVGERKLVG ELVQV SDNIKLIRENLKIA+DR KSYADK+RRDL+FQ
Subjt:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ

Query:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTIRKLEGFLVFSDDLSILEVHKSNQKLYLVWLESLFNILQLS
        IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPI+LK+DL YR+EAIQILDRKEQ     +  K  GFLVFSD LSILEVHKSNQKLYL+WLESLFNILQLS
Subjt:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTIRKLEGFLVFSDDLSILEVHKSNQKLYLVWLESLFNILQLS

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E520 uncharacterized protein LOC107992029

9.6e-91

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Query:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ
        ML+ACVL FKGNWDTH SLMEFAYNN YQ S+GMAPFEALYGRPCRTPVCWNEVGERKLVG ELVQV SDNIKLIRENLKIA+DR KSYADK+RRDL+FQ
Subjt:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ

Query:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTIRKLEGFLVFSDDLSILEVHKSNQKLYLVWLESLFNILQLS
        IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPI+LK+DL YR+EAIQILDRKEQ     +  K  GFLVFSD LSILEVHKSNQKLYL+WLESLFNILQLS
Subjt:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTIRKLEGFLVFSDDLSILEVHKSNQKLYLVWLESLFNILQLS

A0A5A7TI15 Reverse transcriptase

5.3e-73

83.12

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Query:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ
        ML+ACVL  KG+WDTHL LMEFAYNN YQ SI +AP+EALYGRPCRTPVCWNEVGERKLVGPELVQ+ ++NIKLIRENL+IAQDR KSYADKRRR+L+FQ
Subjt:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ

Query:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTI
        +G+QVFLKLSPWRGV+RFGRKDPSHVLQ QP++LKEDLSY EE +QILDRKEQVLRNKTI
Subjt:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTI

A0A5A7TN04 Reverse transcriptase

9.0e-73

82.5

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Query:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ
        ML+ACVL  KG+WDTHL LMEF+YNN YQ SIGMAP+EALYGRPCRTPVCWNEVGERKLVGPELVQ+ ++NIKLIRENL+ AQDR KSYADKRRR+L+FQ
Subjt:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ

Query:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTI
        +G+QVFLKLSPWRGV+RFGRKDPSHVLQ QP++LKEDLSY EE +QILD+KEQVLRNKTI
Subjt:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTI

A0A5D3DSK8 DNA/RNA polymerase superfamily protein

2.4e-78

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Query:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ
        MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGM PFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDR+KSYA+KRRRDLKF+
Subjt:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ

Query:  IGEQVFLKLSPWRGVLRFGRK-----------------------------------------------DPSHVLQVQPIDLKEDLSYREEAIQILDRKEQ
        IGEQVFLKLSPWRGVLRFGRK                                               DPSHVLQVQPIDLKEDLSYREEA+QILDRKEQ
Subjt:  IGEQVFLKLSPWRGVLRFGRK-----------------------------------------------DPSHVLQVQPIDLKEDLSYREEAIQILDRKEQ

Query:  VLRNKTIR
        VLRNKTIR
Subjt:  VLRNKTIR

A0A5D3DW05 Putative DNA/RNA polymerases superfamily protein

3.5e-85

85.19

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Query:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ
        ML+ACVL FKGNWDTH SLMEFAYNN YQ S+GMAPFEALYGRPCRTPVCWNEVGERKLVG ELVQV SDNIKLIRENLKIA+DR KSYADK+RRDL+FQ
Subjt:  MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQ

Query:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTIRKLEGFLVFSDDLSILEVHKSNQKLYLVW
        IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPI+LK+DL YR+EAIQILDRKEQ     +  K  GFLVFSD LSILEVHKSNQKLYL+W
Subjt:  IGEQVFLKLSPWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTIRKLEGFLVFSDDLSILEVHKSNQKLYLVW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGAAAGCATGTGTCCTTCCGTTTAAGGGAAATTGGGATACCCACTTATCACTTATGGAGTTCGCTTATAATAACATCTACCAGCTTAGTATCGGCATGGCACCATT
TGAGGCTTTGTATGGCAGACCATGCAGGACTCCTGTGTGCTGGAACGAAGTGGGAGAACGAAAGCTAGTTGGTCCTGAGTTAGTACAAGTTATGTCAGACAATATTAAGC
TAATTAGGGAAAATCTGAAAATAGCTCAGGATCGAATGAAGAGCTATGCAGATAAGCGACGAAGAGACTTAAAGTTCCAGATTGGAGAACAAGTTTTCTTAAAGTTATCT
CCGTGGAGAGGTGTTCTTCGTTTTGGGAGAAAAGATCCATCACATGTGTTGCAAGTACAACCAATTGATCTGAAAGAAGACTTGAGTTATAGAGAGGAAGCAATTCAGAT
CCTCGACAGGAAGGAGCAAGTTTTGAGGAACAAAACGATCCGCAAACTAGAAGGATTTCTGGTGTTCTCTGATGATTTGAGTATTCTGGAAGTGCATAAGTCAAATCAGA
AGCTTTATTTGGTATGGTTGGAAAGCTTATTCAATATCCTACAACTTTCATGA

mRNA sequence

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Protein sequence

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MLKACVLPFKGNWDTHLSLMEFAYNNIYQLSIGMAPFEALYGRPCRTPVCWNEVGERKLVGPELVQVMSDNIKLIRENLKIAQDRMKSYADKRRRDLKFQIGEQVFLKLS
PWRGVLRFGRKDPSHVLQVQPIDLKEDLSYREEAIQILDRKEQVLRNKTIRKLEGFLVFSDDLSILEVHKSNQKLYLVWLESLFNILQLS

Pay0020652 (gene) of Melon (Payzawat) v1 genome