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Pay0020709 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0020709
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrotransposon protein
Genome locationchr07:19482898..19483632
RNA-Seq ExpressionPay0020709
SyntenyPay0020709
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-5664.92Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHS----------------------CAL
        MLRTRGGLEATQYVDVEE  AIFL+IVA+DVKNRVARRHFARS  TVSRHFNVVLNAVLR+HEILLKQPD VTHS                      CAL
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHS----------------------CAL

Query:  DGTYIKVNVSMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG
        DGT+IKVNVSM D PR                            WEGSASDSRVLRD VSRP G+K PKGYYYLCDASY N EGFLAPYRG
Subjt:  DGTYIKVNVSMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG

KAA0050107.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.3e-5969.78Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSC-------------ALDGTYIKVNV
        MLRT+GGLEATQYVDVEE VAIFL+IVA+DVKNRVARRHFARS ETVSRHFN VLNAVLRLHEILLKQPDPVTHSC             AL GT+IKVNV
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSC-------------ALDGTYIKVNV

Query:  SMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG
        SM DRPR                            WEGSASDSRVLRDAVSRPT +K PKGYYYLCDA YPN EGFLAPYRG
Subjt:  SMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-5567.03Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSC-------------ALDGTYIKVNV
        MLRT+GGLEATQYVDVEE +AIFL+IVA+DVKNRV RRHFARS ETVSRHF    NAVLRLHEILLKQPDPVT+SC             ALDGT+IKVNV
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSC-------------ALDGTYIKVNV

Query:  SMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG
        SM DRPR                            WEGSASDSRVLRDAVSR TG+K PKGYYYLCDA YPN EGFLAPYRG
Subjt:  SMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG

TYK08067.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-6073.37Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPR------
        MLRTRGGLEATQYVDVEE  AIFL+IVA+DVKNRVARRHFARS  TVSRHFNVVLNAVLR+HEILLKQPD VTHSCALDGT+IKVNVSM D PR      
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPR------

Query:  ----------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG
                              WEGSASDSRVLRD VSRP G+K PKGYYYLCDASY N EGFLAPYRG
Subjt:  ----------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG

XP_008462938.1 PREDICTED: uncharacterized protein LOC103501200 [Cucumis melo]7.2e-7197.86Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPRWEGSAS
        MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSE VSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPRWEGSAS
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPRWEGSAS

Query:  DSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYR
        DSRVLRDAVSRPTGIKAPKGYY LCDASYPNTEGFLA YR
Subjt:  DSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYR

TrEMBL top hitse value%identityAlignment
A0A1S3CI20 uncharacterized protein LOC1035012003.5e-7197.86Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPRWEGSAS
        MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSE VSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPRWEGSAS
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPRWEGSAS

Query:  DSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYR
        DSRVLRDAVSRPTGIKAPKGYY LCDASYPNTEGFLA YR
Subjt:  DSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYR

A0A5A7U3R2 Retrotransposon protein1.4e-5664.92Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHS----------------------CAL
        MLRTRGGLEATQYVDVEE  AIFL+IVA+DVKNRVARRHFARS  TVSRHFNVVLNAVLR+HEILLKQPD VTHS                      CAL
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHS----------------------CAL

Query:  DGTYIKVNVSMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG
        DGT+IKVNVSM D PR                            WEGSASDSRVLRD VSRP G+K PKGYYYLCDASY N EGFLAPYRG
Subjt:  DGTYIKVNVSMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG

A0A5A7U6W3 Putative nuclease HARBI16.2e-6069.78Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSC-------------ALDGTYIKVNV
        MLRT+GGLEATQYVDVEE VAIFL+IVA+DVKNRVARRHFARS ETVSRHFN VLNAVLRLHEILLKQPDPVTHSC             AL GT+IKVNV
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSC-------------ALDGTYIKVNV

Query:  SMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG
        SM DRPR                            WEGSASDSRVLRDAVSRPT +K PKGYYYLCDA YPN EGFLAPYRG
Subjt:  SMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG

A0A5A7VG45 Retrotransposon protein9.2e-5667.03Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSC-------------ALDGTYIKVNV
        MLRT+GGLEATQYVDVEE +AIFL+IVA+DVKNRV RRHFARS ETVSRHF    NAVLRLHEILLKQPDPVT+SC             ALDGT+IKVNV
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSC-------------ALDGTYIKVNV

Query:  SMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG
        SM DRPR                            WEGSASDSRVLRDAVSR TG+K PKGYYYLCDA YPN EGFLAPYRG
Subjt:  SMRDRPR----------------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG

A0A5D3C7X6 Retrotransposon protein2.1e-6073.37Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPR------
        MLRTRGGLEATQYVDVEE  AIFL+IVA+DVKNRVARRHFARS  TVSRHFNVVLNAVLR+HEILLKQPD VTHSCALDGT+IKVNVSM D PR      
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPR------

Query:  ----------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG
                              WEGSASDSRVLRD VSRP G+K PKGYYYLCDASY N EGFLAPYRG
Subjt:  ----------------------WEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein2.4e-0828.57Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRL---------HEILLKQPDPVT-----------HSCALDG
        ML+T   L+ T  + +EE+VA+FL I  ++   R     F R+ ETV R F  VL A   L          + L + P+ +               A+DG
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRL---------HEILLKQPDPVT-----------HSCALDG

Query:  TYIKVNV-------------------------SMRDRPRWE---GSASDSRVLRDAVSRPTGIKAPKG-YYYLCDASYPNTEGFLAPYR
        T++ V V                          M     W    GS  D+ VL+ A    +    P    YYL D+ YPN +G LAPYR
Subjt:  TYIKVNV-------------------------SMRDRPRWE---GSASDSRVLRDAVSRPTGIKAPKG-YYYLCDASYPNTEGFLAPYR

AT4G10890.1 unknown protein1.6e-0429.17Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFAR---SSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPRWEG
        ML  R GL+  + V +EE+VA+FL  V    KNR  R   AR   S   V R  + VL+A+L+     LK  +                           
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFAR---SSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPRWEG

Query:  SASDSRVLRDAVSRPTGIKAPKG-YYYLCDASYPNTEGFLAPYR
         + D++VL+      +    P    YYL ++ YP T G+L P+R
Subjt:  SASDSRVLRDAVSRPTGIKAPKG-YYYLCDASYPNTEGFLAPYR

AT5G28730.1 unknown protein2.2e-0930.41Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLK--------------QPDP---------------
        +L  + GL+++  + ++E+VAIFL I A +   R     F  + ET+ R F+ VL A+ RL    ++              Q D                
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLK--------------QPDP---------------

Query:  -VTHSCALDGTYIKVNVSMRDRPRWEGSASDSRVLRDAVS-RPTGIKAPKGYYYLCDASYPNTEGFLAPYR
         V   C LD  +    V M       GS  D+RVL  A+S  P     P   YYL D+ Y N  G+LAPYR
Subjt:  -VTHSCALDGTYIKVNVSMRDRPRWEGSASDSRVLRDAVS-RPTGIKAPKGYYYLCDASYPNTEGFLAPYR

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.3e-2233.33Show/hide
Query:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRL---------HEILLKQPDPVTHSC--ALDGTYIKVNVSM
        +L+TRG L  T  + +E  +AIFL+I+ ++++ R  +  F  S ET+SRHFN VLNAV+ +         +   L+  DP    C   +D  +I V V +
Subjt:  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRL---------HEILLKQPDPVTHSC--ALDGTYIKVNVSM

Query:  RDR----------------------------PRWEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG
         ++                              WEGSASD +VL  A++R   ++ P+G YY+ D  YPN  GF+APY G
Subjt:  RDR----------------------------PRWEGSASDSRVLRDAVSRPTGIKAPKGYYYLCDASYPNTEGFLAPYRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGACGGTTGCGATTTTTTTGTATATTGTAGCATACGATGTTAAGAATAGGGTAGCTCG
ACGACATTTTGCAAGGTCTAGTGAAACAGTGTCAAGACACTTCAATGTTGTTCTTAATGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCC
ATTCATGTGCATTAGATGGTACATACATCAAAGTGAATGTAAGTATGAGGGATCGCCCAAGATGGGAAGGGTCTGCATCTGATTCGAGAGTACTTAGAGATGCAGTGTCA
AGACCTACTGGTATAAAAGCCCCAAAGGGTTACTACTACTTGTGTGATGCTAGTTATCCAAATACCGAAGGATTCCTCGCTCCATACCGAGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGACGGTTGCGATTTTTTTGTATATTGTAGCATACGATGTTAAGAATAGGGTAGCTCG
ACGACATTTTGCAAGGTCTAGTGAAACAGTGTCAAGACACTTCAATGTTGTTCTTAATGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCC
ATTCATGTGCATTAGATGGTACATACATCAAAGTGAATGTAAGTATGAGGGATCGCCCAAGATGGGAAGGGTCTGCATCTGATTCGAGAGTACTTAGAGATGCAGTGTCA
AGACCTACTGGTATAAAAGCCCCAAAGGGTTACTACTACTTGTGTGATGCTAGTTATCCAAATACCGAAGGATTCCTCGCTCCATACCGAGGTTAA
Protein sequenceShow/hide protein sequence
MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSETVSRHFNVVLNAVLRLHEILLKQPDPVTHSCALDGTYIKVNVSMRDRPRWEGSASDSRVLRDAVS
RPTGIKAPKGYYYLCDASYPNTEGFLAPYRG