CuGenDBv2

Gene ID	Pay0020827
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr10:24661137..24661586
RNA-Seq Expression	Pay0020827
Synteny	Pay0020827
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036574.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.7e-59

80.67

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Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DADW G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ES
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE
        EYRALADAT ELIWL WLLT + APQ SP ILHCDN SAIQIAH DVFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.7e-59

80.67

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Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DADW G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ES
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE
        EYRALADAT ELIWL WLLT + APQ SP ILHCDN SAIQIAH DVFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE

KAA0058316.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.7e-60

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Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DADW G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ES
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE
        EYRALADAT ELIWL WLLT +RAPQ SPIILHCDN SAIQIAH DVFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.7e-59

80.67

Show/hide

Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DADW G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ES
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE
        EYRALADAT ELIWL WLLT + APQ SP ILHCDN SAIQIAH DVFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE

XP_016903254.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]

9.3e-77

96.64

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Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        MTHLDTAYAIHIVSQ IAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVL GFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQ+VVSRSS ES
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAHDVFHE
        EYRALADATLELIWLHWLLTV+RAPQRSPIILHCDNCSAIQIAHDVFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAHDVFHE

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E4U9 uncharacterized mitochondrial protein AtMg00810-like

4.5e-77

96.64

Show/hide

Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        MTHLDTAYAIHIVSQ IAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVL GFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQ+VVSRSS ES
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAHDVFHE
        EYRALADATLELIWLHWLLTV+RAPQRSPIILHCDNCSAIQIAHDVFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAHDVFHE

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.2e-59

80.67

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Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DADW G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ES
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE
        EYRALADAT ELIWL WLLT + APQ SP ILHCDN SAIQIAH DVFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE

A0A5A7UVX4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-60

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Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DADW G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ES
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE
        EYRALADAT ELIWL WLLT +RAPQ SPIILHCDN SAIQIAH DVFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.2e-59

80.67

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Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DADW G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ES
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE
        EYRALADAT ELIWL WLLT + APQ SP ILHCDN SAIQIAH DVFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE

A0A5D3DWU7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.2e-59

80.67

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Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DADW G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ES
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE
        EYRALADAT ELIWL WLLT + APQ SP ILHCDN SAIQIAH DVFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAH-DVFHE

SwissProt top hits

e value

%identity

Alignment

P0CV72 Secreted RxLR effector protein 161

1.3e-17

39.13

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Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D A A+ ++SQ  + P   H+  +  ++RY++ T  + L+F+   +  L G+ DADW G    RRS++ Y   L    +SWRSKKQ  V+ SS E 
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWL
        EY AL++AT E +WL
Subjt:  EYRALADATLELIWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.0e-17

35.81

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Query:  THLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESE
        T  D A+A+ +VS+ +  P   H+  V  I+RY++GT G  L F   S  +L G+ DAD  G   +R+SST Y        ISW+SK Q  V+ S+ E+E
Subjt:  THLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESE

Query:  YRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIA-HDVFH
        Y A  +   E+IWL   L  +   Q+   +++CD+ SAI ++ + ++H
Subjt:  YRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIA-HDVFH

P92519 Uncharacterized mitochondrial protein AtMg00810

5.7e-21

43.86

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Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D +YA++IV Q +  P    F  +  ++RY+KGT+ H L    +S L +  F D+DW G  + RRS+T +C +LG  +ISW +K+Q  VSRSS E+
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIW
        EYRALA    EL W
Subjt:  EYRALADATLELIW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.2e-21

38.51

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Query:  THLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESE
        T  D +YA++ +SQ +  P   H   +  I+RY+ GT  H +     ++L L  + DADW G   D  S+  Y +YLG   ISW SKKQ  V RSS E+E
Subjt:  THLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESE

Query:  YRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQI-AHDVFH
        YR++A+ + E+ W+  LLT +      P +++CDN  A  + A+ VFH
Subjt:  YRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQI-AHDVFH

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

5.2e-22

38.51

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Query:  THLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESE
        T  D +YA++ +SQ +  P   H+  +  ++RY+ GT  H +     ++L L  + DADW G   D  S+  Y +YLG   ISW SKKQ  V RSS E+E
Subjt:  THLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESE

Query:  YRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQI-AHDVFH
        YR++A+ + EL W+  LLT +      P +++CDN  A  + A+ VFH
Subjt:  YRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQI-AHDVFH

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.2e-31

46.67

Show/hide

Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T LD ++A++ +SQ   APR  H   V+ I+ YIKGT+G  L +SS + + L  F DA +      RRS+  YC++LG +LISW+SKKQ VVS+SS E+
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIA-HDVFHE
        EYRAL+ AT E++WL      ++ P   P +L CDN +AI IA + VFHE
Subjt:  EYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIA-HDVFHE

ATMG00810.1 DNA/RNA polymerases superfamily protein

4.1e-22

43.86

Show/hide

Query:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES
        +T  D +YA++IV Q +  P    F  +  ++RY+KGT+ H L    +S L +  F D+DW G  + RRS+T +C +LG  +ISW +K+Q  VSRSS E+
Subjt:  MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIES

Query:  EYRALADATLELIW
        EYRALA    EL W
Subjt:  EYRALADATLELIW

Sequences

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CDS sequence

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ATGACCCACCTAGATACTGCGTATGCAATTCACATTGTTAGTCAATGCATAGCTGCTCCTCGTACTATTCACTTTACTACTGTCCTTTGTATTATTCGTTATATTAAAGG
TACTTTGGGTCATAGTCTACAGTTCTCCTCACATTCCTCTTTGGTTCTCTCTGGATTCTTTGATGCTGATTGGACAGGTCATCCTACTGATAGAAGATCCAGCACTAGTT
ATTGCATCTATTTAGGTGATGCTCTTATCTCTTGGCGCAGCAAGAAACAATATGTTGTTTCTCGTTCCAGCATAGAGTCTGAATATCGTGCTCTGGCTGATGCCACTTTA
GAATTAATATGGCTTCATTGGCTTCTTACTGTTGTGAGGGCTCCACAAAGATCACCCATTATTCTTCATTGTGATAACTGTAGTGCTATTCAGATTGCACACGATGTATT
CCATGAATGA

mRNA sequence

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Protein sequence

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MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATL
ELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAHDVFHE

Pay0020827 (gene) of Melon (Payzawat) v1 genome