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Pay0020930 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0020930
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationchr08:10847544..10849377
RNA-Seq ExpressionPay0020930
SyntenyPay0020930
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025776.1 50S ribosomal protein 5 [Cucumis melo var. makuwa]2.7e-52100Show/hide
Query:  MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRH
        MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRH
Subjt:  MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

XP_004144312.1 50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus]5.3e-6493.46Show/hide
Query:  MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDK
        MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FVENTASLVVKAASETDATGE DSS+VQPAAEAKKEDVPVDK
Subjt:  MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_008455762.1 PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo]4.1e-72100Show/hide
Query:  MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLP
        MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLP
Subjt:  MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLP

Query:  LESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]6.5e-5479.49Show/hide
Query:  SFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVP
        +FLLCSNPLSTS + S   P       CFP TSA PSS+LLM+P+GFQPK FNGVRLRN  FVENTASL+VKA SE D TGE DS+E QP AEAKKEDVP
Subjt:  SFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]1.3e-5481.65Show/hide
Query:  MASFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED
        MASFLLCSNPLSTS H     P       CFP TSA PS MLLMKPIGFQPK FNGVRL    FVEN ASL+VKAASE DA G+ DSSE QP AEAKKED
Subjt:  MASFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein2.6e-6493.46Show/hide
Query:  MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDK
        MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FVENTASLVVKAASETDATGE DSS+VQPAAEAKKEDVPVDK
Subjt:  MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic2.0e-72100Show/hide
Query:  MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLP
        MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLP
Subjt:  MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLP

Query:  LESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A5D3CEM6 50S ribosomal protein 51.3e-52100Show/hide
Query:  MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRH
        MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRH
Subjt:  MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic3.2e-5479.49Show/hide
Query:  SFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVP
        +FLLCSNPLSTS + S   P       CFP TSA PSS+LLM+P+GFQPK FNGVRLRN  FVENTASL+VKA SE D TGE DS+E QP AEAKKEDVP
Subjt:  SFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like1.5e-5177.56Show/hide
Query:  SFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVP
        +FLLCSNPLS S H STL P       CFP   +  +SM LMKP GFQPK FNGVRLRN  FVENT S +VKAASE D TGE DS+E +P+AEAKKEDVP
Subjt:  SFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic4.8e-1545.27Show/hide
Query:  LLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED-VPVDKLPLES
        LLC N  +T+   ++    FP  +A P S +    IG       G R+   P V+      +  AS         +  V+ +   K+ D V VDKLPLES
Subjt:  LLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED-VPVDKLPLES

Query:  KLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        KL+ER E+  +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Subjt:  KLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic1.1e-1458.24Show/hide
Query:  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        T   +V AA+E  A  + D S+V+ A      ++ V  LPLESKLQ +LEQK +MK+AKKIRLRR RL++KR LRK+G WPPSKMKKLKNV
Subjt:  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic1.8e-1447.71Show/hide
Query:  LLCSNPL-STSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKK--EDVPVDKLPL
        LLC N L S S   S+       + +  S +L +KP   + K  N V L  +    +   +VVKAA    A+G +D +E +   E K     VPVDKLPL
Subjt:  LLCSNPL-STSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKK--EDVPVDKLPL

Query:  ESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        ESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  ESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 51.3e-1547.71Show/hide
Query:  LLCSNPL-STSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKK--EDVPVDKLPL
        LLC N L S S   S+       + +  S +L +KP   + K  N V L  +    +   +VVKAA    A+G +D +E +   E K     VPVDKLPL
Subjt:  LLCSNPL-STSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKK--EDVPVDKLPL

Query:  ESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        ESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  ESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTTGCACCCATGTTTTCCACCCACTTCTGCCATCCCTAGCTCTATGTTGCTCAT
GAAGCCTATTGGGTTTCAGCCAAAAACCTTTAATGGAGTCCGGCTACGGAACCACCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCTGCATCTGAGACTGATG
CTACGGGAGAAATTGATAGTAGTGAAGTTCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAA
CAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTACGGAGGAAGCGGCTGGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAA
GTTGAAGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
AGAGATAGTGAGGGGCTCCCAGTTCACGCCATGGCTTCGTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTTGCACCCATGTTTTCCACCCAC
TTCTGCCATCCCTAGCTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAAACCTTTAATGGAGTCCGGCTACGGAACCACCCTTTTGTTGAAAATACAGCATCGT
TAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAATTGATAGTAGTGAAGTTCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCA
TTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTACGGAGGAAGCGGCTGGTTCAGAAACGCCATTTGAGGAAGAA
GGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCCTTTTAGCTCCTTGAATTCAATTCTTGCAGATCGAGAGATGCCATTTCTGCTCATCGCT
TCCAATTTACTGTCTTATTTCTTTATGCTTTCAAGGAAATGTATTTGCTTCTTAATATACCTGAAAGGATCCAGTGAGTAATGAAATGTGCAAATTGTTCTTAGTTTTGA
ACGACTAAATTGGGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAGATTTTATTGGTAATCTTGCAAAGAAAACCTTGCACAAAAACATTTTGT
CTTAGAAACTTAGACTAAGATGAAATTGCACGTCGAGATGAATGATCACCAGGAGTTTGAGCTTGACGTCT
Protein sequenceShow/hide protein sequence
MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLE
QKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV