; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0020971 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0020971
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGlycine-rich RNA-binding protein 3
Genome locationchr11:11277302..11283911
RNA-Seq ExpressionPay0020971
SyntenyPay0020971
Gene Ontology termsGO:0006096 - glycolytic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0008443 - phosphofructokinase activity (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034781.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa]2.1e-6997.96Show/hide
Query:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDA
        MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDA
Subjt:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDA

Query:  QCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
        QCAKDAMDGKA   RPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
Subjt:  QCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS

XP_008455929.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]2.3e-81100Show/hide
Query:  MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDS
        MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDS
Subjt:  MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDS

Query:  GRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
        GRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
Subjt:  GRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS

XP_022986397.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]1.6e-6183.44Show/hide
Query:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFAN
        MMSN N L+LLAR+ALTNIQTP+L+FRCFCSQS    +SA SSSPSAP+NKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F N
Subjt:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFAN

Query:  ENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
        E+DAQ AKDAMDGKA+LGRPL+ISFAL+KVRGGPV VPRLSNINN++GRRS
Subjt:  ENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS

XP_023512965.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]1.3e-6082.78Show/hide
Query:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQ----STSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFAN
        MMSNTNTL+ L R+ALTNIQTP+L+FRCFCSQ    S+SA SSSPSAP+NKLFVAGLSWS+DERSLKDAFSS+GEVTEVRI+YDKDSGRSRGFGFV+F N
Subjt:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQ----STSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFAN

Query:  ENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
        E+DAQ AKDAMDGKA+LGRPL+ISFAL+KVRGGPV VPRLSNINN+ GRRS
Subjt:  ENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS

XP_031736490.1 glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus]3.5e-6989.63Show/hide
Query:  MSVFV-ISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKD
        M VFV I+ TRSQAITNA MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKD
Subjt:  MSVFV-ISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKD

Query:  SGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRR
        SGRSRGFGFV+FAN NDAQCAKDAMDGKAVLGRPL+ISFAL+KVRG PV VPRLSNINNLVGRR
Subjt:  SGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRR

TrEMBL top hitse value%identityAlignment
A0A0A0LQB7 RRM domain-containing protein3.7e-6491.72Show/hide
Query:  MSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQ
        MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQ
Subjt:  MSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQ

Query:  CAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRR
        CAKDAMDGKAVLGRPL+ISFAL+KVRG PV VPRLSNINNLVGRR
Subjt:  CAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRR

A0A1S3C2R4 glycine-rich RNA-binding protein 3, mitochondrial1.1e-81100Show/hide
Query:  MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDS
        MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDS
Subjt:  MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDS

Query:  GRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
        GRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
Subjt:  GRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS

A0A5D3CH06 Glycine-rich RNA-binding protein 31.0e-6997.96Show/hide
Query:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDA
        MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDA
Subjt:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDA

Query:  QCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
        QCAKDAMDGKA   RPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
Subjt:  QCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS

A0A6J1FYH8 glycine-rich RNA-binding protein 4, mitochondrial-like1.6e-5982.12Show/hide
Query:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFAN
        MMSN N L+LLAR+ALTNIQTP+L+FRCFCSQS    +SA SSSPSAP+NKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F N
Subjt:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFAN

Query:  ENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
        E+DAQ AKDAMDGKA+LGRPL+ISFAL+KVRGGPV +PRLSNI N+ GRRS
Subjt:  ENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS

A0A6J1J7F1 glycine-rich RNA-binding protein 4, mitochondrial-like7.6e-6283.44Show/hide
Query:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFAN
        MMSN N L+LLAR+ALTNIQTP+L+FRCFCSQS    +SA SSSPSAP+NKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F N
Subjt:  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFAN

Query:  ENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
        E+DAQ AKDAMDGKA+LGRPL+ISFAL+KVRGGPV VPRLSNINN++GRRS
Subjt:  ENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS

SwissProt top hitse value%identityAlignment
P98179 RNA-binding protein 35.2e-1544.83Show/hide
Query:  SAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRG
        S+   KLFV GL+++ DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A  A  AM+G+++ GR +++  A +  RG
Subjt:  SAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRG

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial1.1e-1745.88Show/hide
Query:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGG
        S+KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A  A+DG+ + GR +K+++A ++  GG
Subjt:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial1.3e-1854.32Show/hide
Query:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEK
        S+KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV F+ E+ A  A   MDGK + GR ++++ A E+
Subjt:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEK

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial2.1e-1646.91Show/hide
Query:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEK
        S KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFV+F +E  A  A   MDGK + GR ++++ A ++
Subjt:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEK

W8E7I1 RNA-binding protein 33.0e-1545.98Show/hide
Query:  SAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRG
        S+   KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A  A  AM+G+++ GR +++  A +  RG
Subjt:  SAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRG

Arabidopsis top hitse value%identityAlignment
AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-3978.79Show/hide
Query:  SSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRL
        +SS ++PS+KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFVDFA E DA  AKDAMDGK +LGRPL+ISFALE+VRGGPV VPRL
Subjt:  SSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRL

AT3G23830.1 glycine-rich RNA-binding protein 49.3e-2054.32Show/hide
Query:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEK
        S+KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV F+ E+ A  A   MDGK + GR ++++ A E+
Subjt:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEK

AT3G23830.2 glycine-rich RNA-binding protein 49.3e-2054.32Show/hide
Query:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEK
        S+KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV F+ E+ A  A   MDGK + GR ++++ A E+
Subjt:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEK

AT4G13850.4 glycine-rich RNA-binding protein 21.8e-1847.06Show/hide
Query:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGG
        S KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFV+F +E  A  A   MDGK + GR ++++ A ++  GG
Subjt:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGG

AT5G61030.1 glycine-rich RNA-binding protein 37.9e-1945.88Show/hide
Query:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGG
        S+KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A  A+DG+ + GR +K+++A ++  GG
Subjt:  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTATTTGTAATATCAAAAACTCGATCACAAGCAATCACCAATGCAATGATGAGCAACACGAACACCTTGCTACTGCTTGCTAGAAAAGCACTAACCAATATCCA
AACTCCAATTCTTACCTTTCGTTGCTTCTGTTCTCAATCCACCTCCGCTCTCTCATCTTCTCCTTCTGCACCAAGCAATAAGCTCTTCGTAGCAGGGTTGTCTTGGTCCA
TGGACGAGAGATCGTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGGAT
TTCGCAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAGGCGGTATTAGGGCGGCCATTGAAGATAAGCTTTGCCCTTGAAAAGGTCCGTGGAGGACC
TGTTGCCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTGA
mRNA sequenceShow/hide mRNA sequence
GCCACTTCATACATTTTTAGAAATGAAAATGACAATTGACATGAGCTAGTTTTTATTCTTTTTTTTCGGCCTCTAAAGGCCAATTGTAAAATCTGTGTCCTCAATCTATG
AGTGTATTTGTAATATCAAAAACTCGATCACAAGCAATCACCAATGCAATGATGAGCAACACGAACACCTTGCTACTGCTTGCTAGAAAAGCACTAACCAATATCCAAAC
TCCAATTCTTACCTTTCGTTGCTTCTGTTCTCAATCCACCTCCGCTCTCTCATCTTCTCCTTCTGCACCAAGCAATAAGCTCTTCGTAGCAGGGTTGTCTTGGTCCATGG
ACGAGAGATCGTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGGATTTC
GCAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAGGCGGTATTAGGGCGGCCATTGAAGATAAGCTTTGCCCTTGAAAAGGTCCGTGGAGGACCTGT
TGCCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTGAAGCTCTTGGTATTTCATCTACATGTTGCATGAATATCTAATCTTGAACTATTCAATTC
CTACTTCTAAATTTGATTTAGATCCTTGACTTGGTTTTGCTGGTATTGAAACCAATAGTATGAAGAACCTCAATTTAGTATTGTTTGATAATTACAGAGAAATACAATAT
CAATTTGGAAGAATTGACGGAACAAAATTCTTGTAGCACTAATCATGATTTATTTTTTATCAAATCATGATAGATAGTTCCCAATTTCTTTT
Protein sequenceShow/hide protein sequence
MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVD
FANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS