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Pay0021098 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0021098
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionIntegrase
Genome locationchr09:4834490..4834852
RNA-Seq ExpressionPay0021098
SyntenyPay0021098
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003729 - mRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037654.1 integrase [Cucumis melo var. makuwa]1.9e-4481.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK
        +RSIQEIYNATN INDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE                  TKLKSN NVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYEKIFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI
KAA0060377.1 integrase [Cucumis melo var. makuwa]6.0e-4378.33Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWE                  TKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI
TYJ95504.1 integrase [Cucumis melo var. makuwa]6.0e-4378.33Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWE                  TKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI
TYK30104.1 integrase [Cucumis melo var. makuwa]6.0e-4378.33Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWE                  TKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI
XP_016900110.1 PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]1.4e-4490.2Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIE
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQ EKWKIAMDQEI+AIRRNETWETK KS+GNVEKYKARLVVKGYKQ+YGVDYE+IFAPVTRIE
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIE

Query:  TI
        TI
Subjt:  TI
TrEMBL top hitse value%identityAlignment
A0A1S4DWL8 uncharacterized mitochondrial protein AtMg00820-like6.9e-4590.2Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIE
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQ EKWKIAMDQEI+AIRRNETWETK KS+GNVEKYKARLVVKGYKQ+YGVDYE+IFAPVTRIE
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIE

Query:  TI
        TI
Subjt:  TI
A0A5D3BQ81 Integrase2.9e-4378.33Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWE                  TKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI
A0A5D3CLV1 Integrase2.9e-4378.33Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWE                  TKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI
A0A5D3DHS9 Integrase9.0e-4581.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK
        +RSIQEIYNATN INDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE                  TKLKSN NVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYEKIFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI
A0A5D3E3T2 Integrase2.9e-4378.33Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWE                  TKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI
SwissProt top hitse value%identityAlignment
P04146 Copia protein3.8e-0838.71Show/hide
Query:  PVTFDE-AIQDEK--WKIAMDQEINAIRRNETW------------------ETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIET
        P +FDE   +D+K  W+ A++ E+NA + N TW                    K    GN  +YKARLV +G+ QKY +DYE+ FAPV RI +
Subjt:  PVTFDE-AIQDEK--WKIAMDQEINAIRRNETW------------------ETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIET
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-0636.84Show/hide
Query:  AMDQEINAIRRNET----------------WETKLKSNGNVE--KYKARLVVKGYKQKYGVDYEKIFAPVTRIETI
        AM +E+ ++++N T                W  KLK +G+ +  +YKARLVVKG++QK G+D+++IF+PV ++ +I
Subjt:  AMDQEINAIRRNET----------------WETKLKSNGNVE--KYKARLVVKGYKQKYGVDYEKIFAPVTRIETI
P92520 Uncharacterized mitochondrial protein AtMg008207.7e-0931.19Show/hide
Query:  NKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETW------------------ETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF
        NK+N  +       +  +P +   A++D  W  AM +E++A+ RN+TW                  +TKL S+G +++ KARLV KG+ Q+ G+ + + +
Subjt:  NKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETW------------------ETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF

Query:  APVTRIETI
        +PV R  TI
Subjt:  APVTRIETI
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.3e-1034.86Show/hide
Query:  KINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE-------------------TKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF
        K N  +    +L    +P T  +A++DE+W+ AM  EINA   N TW+                    K  S+G++ +YKARLV KGY Q+ G+DY + F
Subjt:  KINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE-------------------TKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF

Query:  APVTRIETI
        +PV +  +I
Subjt:  APVTRIETI
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.1e-1033.94Show/hide
Query:  KINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE-------------------TKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF
        K N  +    +L    +P T  +A++D++W+ AM  EINA   N TW+                    K  S+G++ +YKARLV KGY Q+ G+DY + F
Subjt:  KINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWE-------------------TKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF

Query:  APVTRIETI
        +PV +  +I
Subjt:  APVTRIETI
Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.2e-1035.87Show/hide
Query:  DPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIETI
        +P T++EA +   W  AMD EI A+    TWE                   K  S+G +E+YKARLV KGY Q+ G+D+ + F+PV ++ ++
Subjt:  DPVTFDEAIQDEKWKIAMDQEINAIRRNETWE------------------TKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIETI
ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)5.5e-1031.19Show/hide
Query:  NKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETW------------------ETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF
        NK+N  +       +  +P +   A++D  W  AM +E++A+ RN+TW                  +TKL S+G +++ KARLV KG+ Q+ G+ + + +
Subjt:  NKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETW------------------ETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF

Query:  APVTRIETI
        +PV R  TI
Subjt:  APVTRIETI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGTATTCAAGAAATTTATAATGCTACTAACAAAATTAATGATGATCATTTTGCTCATTTTGCATTGTTTGTTGGTGTTGATCCTGTAACTTTTGATGAAGCCAT
CCAAGATGAGAAATGGAAGATTGCAATGGATCAAGAAATTAATGCGATAAGAAGAAATGAAACATGGGAAACAAAGTTGAAGTCAAATGGTAATGTTGAAAAATACAAGG
CAAGACTTGTTGTAAAAGGCTACAAGCAGAAATACGGTGTGGATTATGAAAAAATATTTGCCCCTGTAACAAGAATTGAGACCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGTATTCAAGAAATTTATAATGCTACTAACAAAATTAATGATGATCATTTTGCTCATTTTGCATTGTTTGTTGGTGTTGATCCTGTAACTTTTGATGAAGCCAT
CCAAGATGAGAAATGGAAGATTGCAATGGATCAAGAAATTAATGCGATAAGAAGAAATGAAACATGGGAAACAAAGTTGAAGTCAAATGGTAATGTTGAAAAATACAAGG
CAAGACTTGTTGTAAAAGGCTACAAGCAGAAATACGGTGTGGATTATGAAAAAATATTTGCCCCTGTAACAAGAATTGAGACCATCTGA
Protein sequenceShow/hide protein sequence
MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWETKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIETI