| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0032970.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 4.4e-117 | 46.84 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV---
MS GLTNAP VFMDLMNRVFKDFLDTF+IVFIDDILIY KTEAEH+EHLH+VL+TLRANKLYAKFSKCEFWLKKVTFLGH+VFSEGVS DP KIE V
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV---
Query: ---------------TILTVSDGSRSFVIYSDASKKRLGCVFMQQ-------------------------------------------------------
T+LTV DGS SFVIYSDASK+ LGCV MQQ
Subjt: ---------------TILTVSDGSRSFVIYSDASKKRLGCVFMQQ-------------------------------------------------------
Query: -----------------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFD
GKANVVA AL KVAHSAA ITK+APLL DF+RAEI VSLNDPYLV K LLV+AGQGEDFSISS+DGLTFD
Subjt: -----------------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFD
Query: GRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDLRNAR---------FTSKFWKGLQLALDTSLSF-------------------------------
GRLCV ED+A+KT+LLTEAHS PFTM+PGS KMY+DLR T++ KGLQLAL T L F
Subjt: GRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDLRNAR---------FTSKFWKGLQLALDTSLSF-------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQ-PVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELF
+ PSFSAVHDVF VS+ RKYV++ THVVD+EPLQINENLSYE+Q PVEI AREVK+L NR I+LVKVLW+NH VEEATWE E+D+R Q PELF
Subjt: ------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQ-PVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELF
Query: ED
ED
Subjt: ED
|
|
| KAA0036823.1 pol protein [Cucumis melo var. makuwa] | 4.0e-118 | 45.35 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVVTIL
MS GLTNAP VFM+LMNRVFKDF+DTF+IVFIDDILI KTEAEHEEHL++VL+TL+ANKLYAKFSKCEFWLKKVTFLGH+V SEGVSVDPAKIE VT
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVVTIL
Query: -----------------------------------------------TVSDGSRSFVIYSDASKKRLGCVFMQQG-------------------------
T+ DGS SFVIY+DASKK LGCV MQQG
Subjt: -----------------------------------------------TVSDGSRSFVIYSDASKKRLGCVFMQQG-------------------------
Query: ---------------KANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFDGRLCVPEDSAIKTEL
KANVVA AL KVAHSAALITKQAPLL+DF+RAEI VSL DPYLVEK L+E GQGEDFSISS+DGL F+GRLCVPEDSA+K EL
Subjt: ---------------KANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFDGRLCVPEDSAIKTEL
Query: LTEAHSSPFTMHPGSTKMYKDLR-----------------------------------------------------------------------------
L EAHSSPFTMHPGSTKMY+DLR
Subjt: LTEAHSSPFTMHPGSTKMYKDLR-----------------------------------------------------------------------------
Query: ------------NARFTSKFWKGLQLALDTSLSF------------------------------------------------------------------
NARFTSKFWKGLQLAL T L F
Subjt: ------------NARFTSKFWKGLQLALDTSLSF------------------------------------------------------------------
Query: ----------------------------------------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQPVEILAREVKMLRNR
+ PS SA+HDVF VS+ RKYV++ THVVD+EPLQ++ENLSYEEQPVEILAREVK LRNR
Subjt: ----------------------------------------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQPVEILAREVKMLRNR
Query: VISLVKVLWQNHGVEEATWEREDDMRVQYPELFED
ISLVKVLW+N GVEEAT ERE+DMR QY ELFED
Subjt: VISLVKVLWQNHGVEEATWEREDDMRVQYPELFED
|
|
| TYK18857.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.0e-121 | 45.33 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVVT--
MS GLTNAP VFMD MNRVFKDFLD+F+IVFIDDILIYFKTEAEHEEHLHQVL+TLRANK+YAKFSKCEFWLKKVTFL H+V SE VSVDPAKIE VT
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVVT--
Query: ---------------------------------------ILTVSDGSRSFVIYSDASKKRLGCVFMQQ--------------------------------
+LTVSDGS SFVIYSDASKK LGCV MQQ
Subjt: ---------------------------------------ILTVSDGSRSFVIYSDASKKRLGCVFMQQ--------------------------------
Query: ---------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVS-------------------------LNDPYLVEKHLLVEA
GKANVVA AL KVAHSAALITKQAPLL+DFKRAEI VS LNDPYLVEK LVE
Subjt: ---------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVS-------------------------LNDPYLVEKHLLVEA
Query: GQGEDFSISSNDGLTFDGRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDL----------------------------------------------
GQGEDFSISSNDGLTF+GRL VP+DSA+K ELLTEAH SPFTMHPGSTKMY+DL
Subjt: GQGEDFSISSNDGLTFDGRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDL----------------------------------------------
Query: --------------------------------------------RNARFTSKFWKGLQLALDTSLSFGVA------------------------------
R+ARFTSKFWKGLQLAL T L F A
Subjt: --------------------------------------------RNARFTSKFWKGLQLALDTSLSFGVA------------------------------
Query: ------------------------------------------------------------------------PSFSAVHDVFIVSVWRKYVSNLTHVVDY
PS SAVHDVF VS+ RKYV++LTHVVD+
Subjt: ------------------------------------------------------------------------PSFSAVHDVFIVSVWRKYVSNLTHVVDY
Query: EPLQINENLSYEEQPVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELFED
EPLQI+ENLSYEEQ VEILAREVK LR+R ISLVKVLW+NHGVEEATWERE+DMR QYPELFED
Subjt: EPLQINENLSYEEQPVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELFED
|
|
| TYK21999.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 4.4e-117 | 46.84 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV---
MS GLTNAP VFMDLMNRVFKDFLDTF+IVFIDDILIY KTEAEH+EHLH+VL+TLRANKLYAKFSKCEFWLKKVTFLGH+VFSEGVS DP KIE V
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV---
Query: ---------------TILTVSDGSRSFVIYSDASKKRLGCVFMQQ-------------------------------------------------------
T+LTV DGS SFVIYSDASK+ LGCV MQQ
Subjt: ---------------TILTVSDGSRSFVIYSDASKKRLGCVFMQQ-------------------------------------------------------
Query: -----------------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFD
GKANVVA AL KVAHSAA ITK+APLL DF+RAEI VSLNDPYLV K LLV+AGQGEDFSISS+DGLTFD
Subjt: -----------------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFD
Query: GRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDLRNAR---------FTSKFWKGLQLALDTSLSF-------------------------------
GRLCV ED+A+KT+LLTEAHS PFTM+PGS KMY+DLR T++ KGLQLAL T L F
Subjt: GRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDLRNAR---------FTSKFWKGLQLALDTSLSF-------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQ-PVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELF
+ PSFSAVHDVF VS+ RKYV++ THVVD+EPLQINENLSYE+Q PVEI AREVK+L NR I+LVKVLW+NH VEEATWE E+D+R Q PELF
Subjt: ------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQ-PVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELF
Query: ED
ED
Subjt: ED
|
|
| TYK23820.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa] | 4.7e-119 | 52.51 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEV----
MSCGLTNAPT TEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDP KIEV
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEV----
Query: -------------------------------------------------------VTILTVSDGSRSFVIYSDASKKR---------LGC-VFMQQGKAN
+ I T + F + + ++ C + GK N
Subjt: -------------------------------------------------------VTILTVSDGSRSFVIYSDASKKR---------LGC-VFMQQGKAN
Query: VVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFDGRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKM
VVA ALY KVAHSAALITKQAPLLKDFKR EIVVSLNDPYLVEK LLVEAGQGEDFSISS+DGLTFDGRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKM
Subjt: VVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFDGRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKM
Query: YKDL--------------------------------------------------RNARFTSKFWKGLQLALDTS--LSFGVAP-----------------
YKDL RNARFTSKFWKGLQLALD S + G+ P
Subjt: YKDL--------------------------------------------------RNARFTSKFWKGLQLALDTS--LSFGVAP-----------------
Query: ---------------------------SFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQPVEILAREVKMLRNRVISLVKVLWQNHGVEEA
S +HDV VSVWRKYV+NLTHVVD EPLQINENL YEEQ VEILAREVKMLRNRVISLVKVLWQNHGVEEA
Subjt: ---------------------------SFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQPVEILAREVKMLRNRVISLVKVLWQNHGVEEA
Query: TWEREDDMRVQYPELFED
TWEREDD+RVQYPELFED
Subjt: TWEREDDMRVQYPELFED
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SPY5 Reverse transcriptase | 2.1e-117 | 46.84 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV---
MS GLTNAP VFMDLMNRVFKDFLDTF+IVFIDDILIY KTEAEH+EHLH+VL+TLRANKLYAKFSKCEFWLKKVTFLGH+VFSEGVS DP KIE V
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV---
Query: ---------------TILTVSDGSRSFVIYSDASKKRLGCVFMQQ-------------------------------------------------------
T+LTV DGS SFVIYSDASK+ LGCV MQQ
Subjt: ---------------TILTVSDGSRSFVIYSDASKKRLGCVFMQQ-------------------------------------------------------
Query: -----------------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFD
GKANVVA AL KVAHSAA ITK+APLL DF+RAEI VSLNDPYLV K LLV+AGQGEDFSISS+DGLTFD
Subjt: -----------------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFD
Query: GRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDLRNAR---------FTSKFWKGLQLALDTSLSF-------------------------------
GRLCV ED+A+KT+LLTEAHS PFTM+PGS KMY+DLR T++ KGLQLAL T L F
Subjt: GRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDLRNAR---------FTSKFWKGLQLALDTSLSF-------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQ-PVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELF
+ PSFSAVHDVF VS+ RKYV++ THVVD+EPLQINENLSYE+Q PVEI AREVK+L NR I+LVKVLW+NH VEEATWE E+D+R Q PELF
Subjt: ------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQ-PVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELF
Query: ED
ED
Subjt: ED
|
|
| A0A5A7T1M8 Pol protein | 1.9e-118 | 45.35 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVVTIL
MS GLTNAP VFM+LMNRVFKDF+DTF+IVFIDDILI KTEAEHEEHL++VL+TL+ANKLYAKFSKCEFWLKKVTFLGH+V SEGVSVDPAKIE VT
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVVTIL
Query: -----------------------------------------------TVSDGSRSFVIYSDASKKRLGCVFMQQG-------------------------
T+ DGS SFVIY+DASKK LGCV MQQG
Subjt: -----------------------------------------------TVSDGSRSFVIYSDASKKRLGCVFMQQG-------------------------
Query: ---------------KANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFDGRLCVPEDSAIKTEL
KANVVA AL KVAHSAALITKQAPLL+DF+RAEI VSL DPYLVEK L+E GQGEDFSISS+DGL F+GRLCVPEDSA+K EL
Subjt: ---------------KANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFDGRLCVPEDSAIKTEL
Query: LTEAHSSPFTMHPGSTKMYKDLR-----------------------------------------------------------------------------
L EAHSSPFTMHPGSTKMY+DLR
Subjt: LTEAHSSPFTMHPGSTKMYKDLR-----------------------------------------------------------------------------
Query: ------------NARFTSKFWKGLQLALDTSLSF------------------------------------------------------------------
NARFTSKFWKGLQLAL T L F
Subjt: ------------NARFTSKFWKGLQLALDTSLSF------------------------------------------------------------------
Query: ----------------------------------------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQPVEILAREVKMLRNR
+ PS SA+HDVF VS+ RKYV++ THVVD+EPLQ++ENLSYEEQPVEILAREVK LRNR
Subjt: ----------------------------------------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQPVEILAREVKMLRNR
Query: VISLVKVLWQNHGVEEATWEREDDMRVQYPELFED
ISLVKVLW+N GVEEAT ERE+DMR QY ELFED
Subjt: VISLVKVLWQNHGVEEATWEREDDMRVQYPELFED
|
|
| A0A5D3D5M9 Ty3-gypsy retrotransposon protein | 4.9e-122 | 45.33 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVVT--
MS GLTNAP VFMD MNRVFKDFLD+F+IVFIDDILIYFKTEAEHEEHLHQVL+TLRANK+YAKFSKCEFWLKKVTFL H+V SE VSVDPAKIE VT
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVVT--
Query: ---------------------------------------ILTVSDGSRSFVIYSDASKKRLGCVFMQQ--------------------------------
+LTVSDGS SFVIYSDASKK LGCV MQQ
Subjt: ---------------------------------------ILTVSDGSRSFVIYSDASKKRLGCVFMQQ--------------------------------
Query: ---------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVS-------------------------LNDPYLVEKHLLVEA
GKANVVA AL KVAHSAALITKQAPLL+DFKRAEI VS LNDPYLVEK LVE
Subjt: ---------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVS-------------------------LNDPYLVEKHLLVEA
Query: GQGEDFSISSNDGLTFDGRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDL----------------------------------------------
GQGEDFSISSNDGLTF+GRL VP+DSA+K ELLTEAH SPFTMHPGSTKMY+DL
Subjt: GQGEDFSISSNDGLTFDGRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDL----------------------------------------------
Query: --------------------------------------------RNARFTSKFWKGLQLALDTSLSFGVA------------------------------
R+ARFTSKFWKGLQLAL T L F A
Subjt: --------------------------------------------RNARFTSKFWKGLQLALDTSLSFGVA------------------------------
Query: ------------------------------------------------------------------------PSFSAVHDVFIVSVWRKYVSNLTHVVDY
PS SAVHDVF VS+ RKYV++LTHVVD+
Subjt: ------------------------------------------------------------------------PSFSAVHDVFIVSVWRKYVSNLTHVVDY
Query: EPLQINENLSYEEQPVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELFED
EPLQI+ENLSYEEQ VEILAREVK LR+R ISLVKVLW+NHGVEEATWERE+DMR QYPELFED
Subjt: EPLQINENLSYEEQPVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELFED
|
|
| A0A5D3DF76 Reverse transcriptase | 2.1e-117 | 46.84 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV---
MS GLTNAP VFMDLMNRVFKDFLDTF+IVFIDDILIY KTEAEH+EHLH+VL+TLRANKLYAKFSKCEFWLKKVTFLGH+VFSEGVS DP KIE V
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV---
Query: ---------------TILTVSDGSRSFVIYSDASKKRLGCVFMQQ-------------------------------------------------------
T+LTV DGS SFVIYSDASK+ LGCV MQQ
Subjt: ---------------TILTVSDGSRSFVIYSDASKKRLGCVFMQQ-------------------------------------------------------
Query: -----------------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFD
GKANVVA AL KVAHSAA ITK+APLL DF+RAEI VSLNDPYLV K LLV+AGQGEDFSISS+DGLTFD
Subjt: -----------------------------GKANVVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFD
Query: GRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDLRNAR---------FTSKFWKGLQLALDTSLSF-------------------------------
GRLCV ED+A+KT+LLTEAHS PFTM+PGS KMY+DLR T++ KGLQLAL T L F
Subjt: GRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKMYKDLRNAR---------FTSKFWKGLQLALDTSLSF-------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQ-PVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELF
+ PSFSAVHDVF VS+ RKYV++ THVVD+EPLQINENLSYE+Q PVEI AREVK+L NR I+LVKVLW+NH VEEATWE E+D+R Q PELF
Subjt: ------GVAPSFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQ-PVEILAREVKMLRNRVISLVKVLWQNHGVEEATWEREDDMRVQYPELF
Query: ED
ED
Subjt: ED
|
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| A0A5D3DK87 Retrotransposon protein, putative, Ty3-gypsy sub-class | 2.3e-119 | 52.51 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEV----
MSCGLTNAPT TEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDP KIEV
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEV----
Query: -------------------------------------------------------VTILTVSDGSRSFVIYSDASKKR---------LGC-VFMQQGKAN
+ I T + F + + ++ C + GK N
Subjt: -------------------------------------------------------VTILTVSDGSRSFVIYSDASKKR---------LGC-VFMQQGKAN
Query: VVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFDGRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKM
VVA ALY KVAHSAALITKQAPLLKDFKR EIVVSLNDPYLVEK LLVEAGQGEDFSISS+DGLTFDGRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKM
Subjt: VVAGALYMKVAHSAALITKQAPLLKDFKRAEIVVSLNDPYLVEKHLLVEAGQGEDFSISSNDGLTFDGRLCVPEDSAIKTELLTEAHSSPFTMHPGSTKM
Query: YKDL--------------------------------------------------RNARFTSKFWKGLQLALDTS--LSFGVAP-----------------
YKDL RNARFTSKFWKGLQLALD S + G+ P
Subjt: YKDL--------------------------------------------------RNARFTSKFWKGLQLALDTS--LSFGVAP-----------------
Query: ---------------------------SFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQPVEILAREVKMLRNRVISLVKVLWQNHGVEEA
S +HDV VSVWRKYV+NLTHVVD EPLQINENL YEEQ VEILAREVKMLRNRVISLVKVLWQNHGVEEA
Subjt: ---------------------------SFSAVHDVFIVSVWRKYVSNLTHVVDYEPLQINENLSYEEQPVEILAREVKMLRNRVISLVKVLWQNHGVEEA
Query: TWEREDDMRVQYPELFED
TWEREDD+RVQYPELFED
Subjt: TWEREDDMRVQYPELFED
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04323 Retrovirus-related Pol polyprotein from transposon 17.6 | 1.3e-10 | 35.05 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV
M GL NAP F MN + + L+ +V++DDI+++ + EH + L V + L L + KCEF ++ TFLGH++ +G+ +P KIE +
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV
|
|
| P0CT41 Transposon Tf2-12 polyprotein | 1.0e-07 | 30.93 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV
M G++ AP F +N + + ++ ++ ++DDILI+ K+E+EH +H+ VL+ L+ L +KCEF +V F+G+ + +G + I+ V
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV
|
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| P20825 Retrovirus-related Pol polyprotein from transposon 297 | 2.8e-10 | 34.02 | Show/hide |
Query: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV
M GL NAP F MN + + L+ +V++DDI+I+ + EH + V L L + KCEF K+ FLGH+V +G+ +P K++ +
Subjt: MSCGLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVV
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| Q89703 Putative enzymatic polyprotein | 1.6e-08 | 36.36 | Show/hide |
Query: GLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDP
G N+P++F M+R+F+ + D F+IV+IDDIL++ KT EH+ H+ + AN L K E +K+ FLG + G+ + P
Subjt: GLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDP
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| Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus | 1.0e-07 | 29.47 | Show/hide |
Query: GLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVVT
GL NAP +F +++ + ++ + V+IDDI+++ + H ++L VL +L L K F +V FLG++V ++G+ DP K+ ++
Subjt: GLTNAPTVFMDLMNRVFKDFLDTFLIVFIDDILIYFKTEAEHEEHLHQVLKTLRANKLYAKFSKCEFWLKKVTFLGHMVFSEGVSVDPAKIEVVT
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