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Pay0021230 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0021230
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag-pol polyprotein
Genome locationchr07:12987495..12987911
RNA-Seq ExpressionPay0021230
SyntenyPay0021230
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035157.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.0e-6389.93Show/hide
Query:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVD-SALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKT
        +PSAHVKKNH AS +IGDPSAGMQTRRKDKIDYLKMVADLCYI TIE STVD SALKDEYWLNAMQEELLQFRRNNVW LV KP GVNVIGTKWIFKNKT
Subjt:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVD-SALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKT

Query:  DETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
        DE GC TKNKARLVAQGYTQVEGVDFDETFA +ARLEAI
Subjt:  DETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI

KAA0058258.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.0e-6188.72Show/hide
Query:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD
        +PSAHVKKNH +S +IGDPSAGMQTR+KDK DYLKMVADLCYI TIEPSTVDS LKDEYWLNAMQEELLQFRRNNVW LVSKPEGVNVIGTKWIFKNKTD
Subjt:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD

Query:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIA
        ET C  KNKARLVAQGYTQVEGVDFDETFA +A
Subjt:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIA

KAA0065371.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.0e-6185.51Show/hide
Query:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD
        +PSAHVKKNH AS +IGDPSAGM TR+K+KIDY+KMVADLCY  TIEP T+DS LKDEY LNAMQEELLQFRRNNVW LVSKPEGVNVIGTKW+FKNKTD
Subjt:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD

Query:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
        E GC TKNKARLVAQGYTQVEGVDFDETFA +ARLEAI
Subjt:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI

KAA0066164.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.7e-6487.5Show/hide
Query:  SAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDET
        SAHVKKNH AS +IGDPS GMQTRRK+KIDY+KMVADLCYI T+EPSTVDSAL+DEYWLNAMQEELLQFR+NNVWTLVSKPEGVNVIGTKW+FKNKTDE 
Subjt:  SAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDET

Query:  GCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
        GC TKNKA+LVAQGYTQVEG+DFDETFA +ARLEAI
Subjt:  GCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI

XP_016899852.1 PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]2.1e-6795.65Show/hide
Query:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD
        MPSAHVKKNHLAS MIGDPSAGMQTRR DKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFR+NNVWTLVSKPEGVNVIGTKWIF  KTD
Subjt:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD

Query:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
        ET CATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
Subjt:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI

TrEMBL top hitse value%identityAlignment
A0A1S4DV38 uncharacterized mitochondrial protein AtMg00820-like1.0e-6795.65Show/hide
Query:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD
        MPSAHVKKNHLAS MIGDPSAGMQTRR DKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFR+NNVWTLVSKPEGVNVIGTKWIF  KTD
Subjt:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD

Query:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
        ET CATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
Subjt:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI

A0A5A7T0Q0 Gag-pol polyprotein3.4e-6389.93Show/hide
Query:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVD-SALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKT
        +PSAHVKKNH AS +IGDPSAGMQTRRKDKIDYLKMVADLCYI TIE STVD SALKDEYWLNAMQEELLQFRRNNVW LV KP GVNVIGTKWIFKNKT
Subjt:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVD-SALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKT

Query:  DETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
        DE GC TKNKARLVAQGYTQVEGVDFDETFA +ARLEAI
Subjt:  DETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI

A0A5A7USY0 Putative mitochondrial protein4.9e-6288.72Show/hide
Query:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD
        +PSAHVKKNH +S +IGDPSAGMQTR+KDK DYLKMVADLCYI TIEPSTVDS LKDEYWLNAMQEELLQFRRNNVW LVSKPEGVNVIGTKWIFKNKTD
Subjt:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD

Query:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIA
        ET C  KNKARLVAQGYTQVEGVDFDETFA +A
Subjt:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIA

A0A5A7VI01 Putative mitochondrial protein4.9e-6285.51Show/hide
Query:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD
        +PSAHVKKNH AS +IGDPSAGM TR+K+KIDY+KMVADLCY  TIEP T+DS LKDEY LNAMQEELLQFRRNNVW LVSKPEGVNVIGTKW+FKNKTD
Subjt:  MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTD

Query:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
        E GC TKNKARLVAQGYTQVEGVDFDETFA +ARLEAI
Subjt:  ETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI

A0A5D3CXU0 Gag-pol polyprotein1.8e-6487.5Show/hide
Query:  SAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDET
        SAHVKKNH AS +IGDPS GMQTRRK+KIDY+KMVADLCYI T+EPSTVDSAL+DEYWLNAMQEELLQFR+NNVWTLVSKPEGVNVIGTKW+FKNKTDE 
Subjt:  SAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDET

Query:  GCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
        GC TKNKA+LVAQGYTQVEG+DFDETFA +ARLEAI
Subjt:  GCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI

SwissProt top hitse value%identityAlignment
P04146 Copia protein4.1e-1341.03Show/hide
Query:  WLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEA
        W  A+  EL   + NN WT+  +PE  N++ ++W+F  K +E G   + KARLVA+G+TQ   +D++ETFA +AR+ +
Subjt:  WLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEA

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.5e-1131.09Show/hide
Query:  MQTRRKDKIDYLKMVADLCYICTIEPSTVDSAL---KDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQ
        +++RR    +Y+ +  D       EP ++   L   +    + AMQEE+   ++N  + LV  P+G   +  KW+FK K D      + KARLV +G+ Q
Subjt:  MQTRRKDKIDYLKMVADLCYICTIEPSTVDSAL---KDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQ

Query:  VEGVDFDETFALIARLEAI
         +G+DFDE F+ + ++ +I
Subjt:  VEGVDFDETFALIARLEAI

P92520 Uncharacterized mitochondrial protein AtMg008207.2e-1844.07Show/hide
Query:  MQTRRKDKIDYLKMVADLCYICTI--EPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQV
        M TR K  I+ L     L    TI  EP +V  ALKD  W  AMQEEL    RN  W LV  P   N++G KW+FK K    G   + KARLVA+G+ Q 
Subjt:  MQTRRKDKIDYLKMVADLCYICTI--EPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQV

Query:  EGVDFDETFALIARLEAI
        EG+ F ET++ + R   I
Subjt:  EGVDFDETFALIARLEAI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.2e-1443.01Show/hide
Query:  EPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEG-VNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
        EP T   ALKDE W NAM  E+     N+ W LV  P   V ++G +WIF  K +  G   + KARLVA+GY Q  G+D+ ETF+ + +  +I
Subjt:  EPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEG-VNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.9e-1336.29Show/hide
Query:  MQTRRKD-------KIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLV-SKPEGVNVIGTKWIFKNKTDETGCATKNKARLVA
        M TR KD       K  Y   +A        EP T   A+KD+ W  AM  E+     N+ W LV   P  V ++G +WIF  K +  G   + KARLVA
Subjt:  MQTRRKD-------KIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLV-SKPEGVNVIGTKWIFKNKTDETGCATKNKARLVA

Query:  QGYTQVEGVDFDETFALIARLEAI
        +GY Q  G+D+ ETF+ + +  +I
Subjt:  QGYTQVEGVDFDETFALIARLEAI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.4e-1537.37Show/hide
Query:  LCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI
        +C     EPST + A +   W  AM +E+      + W + + P     IG KW++K K +  G   + KARLVA+GYTQ EG+DF ETF+ + +L ++
Subjt:  LCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQVEGVDFDETFALIARLEAI

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)5.1e-1944.07Show/hide
Query:  MQTRRKDKIDYLKMVADLCYICTI--EPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQV
        M TR K  I+ L     L    TI  EP +V  ALKD  W  AMQEEL    RN  W LV  P   N++G KW+FK K    G   + KARLVA+G+ Q 
Subjt:  MQTRRKDKIDYLKMVADLCYICTI--EPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCATKNKARLVAQGYTQV

Query:  EGVDFDETFALIARLEAI
        EG+ F ET++ + R   I
Subjt:  EGVDFDETFALIARLEAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTCAGCTCATGTAAAGAAAAATCATCTAGCAAGCTGTATGATAGGTGATCCATCAGCTGGGATGCAGACCAGAAGGAAAGATAAGATTGACTATTTGAAG
ATGGTTGCTGATTTGTGTTATATTTGCACCATTGAACCTTCGACTGTTGACTCTGCTCTCAAGGATGAGTATTGGTTAAATGCAATGCAAGAGGAGCTACTGCAA
TTTAGACGAAATAATGTCTGGACGTTAGTCTCAAAGCCAGAAGGTGTAAACGTTATTGGCACCAAATGGATATTTAAAAATAAGACTGATGAAACTGGATGTGCG
ACGAAAAATAAAGCCAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTGTTGACTTTGATGAAACGTTTGCTCTTATTGCTCGACTTGAAGCCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTCAGCTCATGTAAAGAAAAATCATCTAGCAAGCTGTATGATAGGTGATCCATCAGCTGGGATGCAGACCAGAAGGAAAGATAAGATTGACTATTTGAAG
ATGGTTGCTGATTTGTGTTATATTTGCACCATTGAACCTTCGACTGTTGACTCTGCTCTCAAGGATGAGTATTGGTTAAATGCAATGCAAGAGGAGCTACTGCAA
TTTAGACGAAATAATGTCTGGACGTTAGTCTCAAAGCCAGAAGGTGTAAACGTTATTGGCACCAAATGGATATTTAAAAATAAGACTGATGAAACTGGATGTGCG
ACGAAAAATAAAGCCAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTGTTGACTTTGATGAAACGTTTGCTCTTATTGCTCGACTTGAAGCCATTTGA
Protein sequenceShow/hide protein sequence
MPSAHVKKNHLASCMIGDPSAGMQTRRKDKIDYLKMVADLCYICTIEPSTVDSALKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGTKWIFKNKTDETGCA
TKNKARLVAQGYTQVEGVDFDETFALIARLEAI