| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0031437.1 pol protein [Cucumis melo var. makuwa] | 3.1e-83 | 47.14 | Show/hide |
Query: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
MDWL+ANHANIDCYGKEVVFNPPSEASFKFRGAGM PEVSLSSEPVVREYPDVFPDEL GLPPPREVDF
Subjt: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
Query: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS----------------------------------------------------------
AIELEPGTAPISRAPY MAPAELKE+KVQLQELLDKGFI PS
Subjt: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS----------------------------------------------------------
Query: -------------------------------------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCE
AEHEEHLHQVLETLRANKLYAKFSKCE
Subjt: -------------------------------------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCE
Query: FW-------------------------------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVP
FW RFVEDFSRIASPLT+LTRKGTPF WSPACERSFQE+KQKLVT PVLTVP
Subjt: FW-------------------------------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVP
Query: DGSGNFVIYSDASEKGLGCV
DGSGNFVIYSDAS+KGLGCV
Subjt: DGSGNFVIYSDASEKGLGCV
|
|
| KAA0033825.1 pol protein [Cucumis melo var. makuwa] | 3.1e-83 | 47.14 | Show/hide |
Query: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
MDWL+ANHANIDCYGKEVVFNPPSEASFKFRGAGM PEVSLSSEPVVREYPDVFPDEL GLPPPREVDF
Subjt: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
Query: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS----------------------------------------------------------
AIELEPGTAPISRAPY MAPAELKE+KVQLQELLDKGFI PS
Subjt: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS----------------------------------------------------------
Query: -------------------------------------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCE
AEHEEHLHQVLETLRANKLYAKFSKCE
Subjt: -------------------------------------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCE
Query: FW-------------------------------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVP
FW RFVEDFSRIASPLT+LTRKGTPF WSPACERSFQE+KQKLVT PVLTVP
Subjt: FW-------------------------------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVP
Query: DGSGNFVIYSDASEKGLGCV
DGSGNFVIYSDAS+KGLGCV
Subjt: DGSGNFVIYSDASEKGLGCV
|
|
| KAA0066264.1 pol protein [Cucumis melo var. makuwa] | 1.8e-83 | 49.24 | Show/hide |
Query: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDFAIELEPGTAPISRAPYIMAPAELKEM
MDWL+ANHANIDC+GKEVVFNPPS ASFKFRGAGM PEVSLSSEPVVREYPDVFPDEL GLPPPREVDFAIELEPGTAPISRAPY MAPAELKE+
Subjt: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDFAIELEPGTAPISRAPYIMAPAELKEM
Query: KVQLQELLDKGFIPPS------------------------------------------------------------------------------------
KVQLQELLDKGFI PS
Subjt: KVQLQELLDKGFIPPS------------------------------------------------------------------------------------
Query: -----------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFW------------------------
AEHEEHLHQVLETLRANKLYAKFSKCEFW
Subjt: -----------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFW------------------------
Query: -------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCV
RFVEDFSRIA PLT+LTRKGTPF WSPACERSFQE+KQKLVT PVLTVPDGSGNFVIYSDAS+KGL CV
Subjt: -------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCV
|
|
| KAA0066365.1 pol protein [Cucumis melo var. makuwa] | 1.8e-83 | 48.75 | Show/hide |
Query: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
MDWL+ANHANIDC+GKEVVFNPPS ASFKFRGAGM PEVSLSSEPVVREYPDVFPDEL GLPPPREVDF
Subjt: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
Query: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS----------------------------------------------------------
AIELEP TAPISRAPY MAPAELKE+KVQLQELLDKGFI PS
Subjt: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS----------------------------------------------------------
Query: -----------------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFW------------------
AEHEEHLHQVLETLRANKLYAKFSKCEFW
Subjt: -----------------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFW------------------
Query: -------------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCV
RFVEDFSRIASPLT+LTRKGTPF WSPACERSFQE+KQKLVT PVLTVPDGSGNFVIYSDAS+KGLGCV
Subjt: -------------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCV
|
|
| XP_008460554.1 PREDICTED: uncharacterized protein LOC103499342 [Cucumis melo] | 2.8e-89 | 59.46 | Show/hide |
Query: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
MDWL+AN+A+I C KEVVFNP ASFKF+G G EVSLSSE VVREYP+VFPDELL LP PR+VDF
Subjt: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
Query: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPSAEHEEHLHQVLETLRANKLYAKFSKCE-----------FWRFVEDFSRIASPLTELTR
AI+LE T PISRAPY M PAELK++KVQLQELLDKGFI P AEHEEHLHQVL TL ANKLYAKF K + RFVE FS IASPLT+LTR
Subjt: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPSAEHEEHLHQVLETLRANKLYAKFSKCE-----------FWRFVEDFSRIASPLTELTR
Query: KGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCVKAPRQKPAGLLQPL-----------------------------VVVDRL
K TPF WSPAC+ SFQE+KQKLV+TPVLTVPDGSG+FVIYSDAS+K L VKAPRQKP GLLQPL V+VDRL
Subjt: KGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCVKAPRQKPAGLLQPL-----------------------------VVVDRL
Query: TKSAHFIPGKSTYTASNAADPLSAGARLKSRGC
TKSAHF+ GKSTYTAS D L G R SR C
Subjt: TKSAHFIPGKSTYTASNAADPLSAGARLKSRGC
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3CCQ8 uncharacterized protein LOC103499342 | 1.4e-89 | 59.46 | Show/hide |
Query: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
MDWL+AN+A+I C KEVVFNP ASFKF+G G EVSLSSE VVREYP+VFPDELL LP PR+VDF
Subjt: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
Query: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPSAEHEEHLHQVLETLRANKLYAKFSKCE-----------FWRFVEDFSRIASPLTELTR
AI+LE T PISRAPY M PAELK++KVQLQELLDKGFI P AEHEEHLHQVL TL ANKLYAKF K + RFVE FS IASPLT+LTR
Subjt: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPSAEHEEHLHQVLETLRANKLYAKFSKCE-----------FWRFVEDFSRIASPLTELTR
Query: KGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCVKAPRQKPAGLLQPL-----------------------------VVVDRL
K TPF WSPAC+ SFQE+KQKLV+TPVLTVPDGSG+FVIYSDAS+K L VKAPRQKP GLLQPL V+VDRL
Subjt: KGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCVKAPRQKPAGLLQPL-----------------------------VVVDRL
Query: TKSAHFIPGKSTYTASNAADPLSAGARLKSRGC
TKSAHF+ GKSTYTAS D L G R SR C
Subjt: TKSAHFIPGKSTYTASNAADPLSAGARLKSRGC
|
|
| A0A5A7V5S3 Retrotransposable element Tf2 | 1.5e-83 | 62.18 | Show/hide |
Query: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
MDWL+ANHA+IDC+ K+VVFNPPS SFKF+GAG+ P+VSLSSEPV REYPDVFPDEL GL PPRE+DF
Subjt: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
Query: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS-------------------AEHEEHLHQVLETLRANKLYAKFSKCEFW----------
I+L+PGTAPISRA YIMA AELKE+KVQLQELLDKGFI PS +HEEHLHQVLETLRANKLYAKFSKCEFW
Subjt: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS-------------------AEHEEHLHQVLETLRANKLYAKFSKCEFW----------
Query: ------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCV
RFVEDFSRIAS LT+LTRKGTPF W+PACE SFQE+KQKLV+ PVLTV DGS +FVIYSDA +KGL CV
Subjt: ------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCV
|
|
| A0A5A7VG30 Reverse transcriptase | 8.7e-84 | 49.24 | Show/hide |
Query: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDFAIELEPGTAPISRAPYIMAPAELKEM
MDWL+ANHANIDC+GKEVVFNPPS ASFKFRGAGM PEVSLSSEPVVREYPDVFPDEL GLPPPREVDFAIELEPGTAPISRAPY MAPAELKE+
Subjt: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDFAIELEPGTAPISRAPYIMAPAELKEM
Query: KVQLQELLDKGFIPPS------------------------------------------------------------------------------------
KVQLQELLDKGFI PS
Subjt: KVQLQELLDKGFIPPS------------------------------------------------------------------------------------
Query: -----------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFW------------------------
AEHEEHLHQVLETLRANKLYAKFSKCEFW
Subjt: -----------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFW------------------------
Query: -------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCV
RFVEDFSRIA PLT+LTRKGTPF WSPACERSFQE+KQKLVT PVLTVPDGSGNFVIYSDAS+KGL CV
Subjt: -------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCV
|
|
| A0A5A7VKS7 Reverse transcriptase | 8.7e-84 | 48.75 | Show/hide |
Query: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
MDWL+ANHANIDC+GKEVVFNPPS ASFKFRGAGM PEVSLSSEPVVREYPDVFPDEL GLPPPREVDF
Subjt: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
Query: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS----------------------------------------------------------
AIELEP TAPISRAPY MAPAELKE+KVQLQELLDKGFI PS
Subjt: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS----------------------------------------------------------
Query: -----------------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFW------------------
AEHEEHLHQVLETLRANKLYAKFSKCEFW
Subjt: -----------------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCEFW------------------
Query: -------------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCV
RFVEDFSRIASPLT+LTRKGTPF WSPACERSFQE+KQKLVT PVLTVPDGSGNFVIYSDAS+KGLGCV
Subjt: -------------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASEKGLGCV
|
|
| A0A5D3CQB5 Reverse transcriptase | 1.5e-83 | 47.14 | Show/hide |
Query: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
MDWL+ANHANIDCYGKEVVFNPPSEASFKFRGAGM PEVSLSSEPVVREYPDVFPDEL GLPPPREVDF
Subjt: MDWLTANHANIDCYGKEVVFNPPSEASFKFRGAGM--------------------------------PEVSLSSEPVVREYPDVFPDELLGLPPPREVDF
Query: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS----------------------------------------------------------
AIELEPGTAPISRAPY MAPAELKE+KVQLQELLDKGFI PS
Subjt: AIELEPGTAPISRAPYIMAPAELKEMKVQLQELLDKGFIPPS----------------------------------------------------------
Query: -------------------------------------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCE
AEHEEHLHQVLETLRANKLYAKFSKCE
Subjt: -------------------------------------------------------------------------AEHEEHLHQVLETLRANKLYAKFSKCE
Query: FW-------------------------------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVP
FW RFVEDFSRIASPLT+LTRKGTPF WSPACERSFQE+KQKLVT PVLTVP
Subjt: FW-------------------------------------------------RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVP
Query: DGSGNFVIYSDASEKGLGCV
DGSGNFVIYSDAS+KGLGCV
Subjt: DGSGNFVIYSDASEKGLGCV
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P03356 Gag-Pol polyprotein | 3.3e-08 | 36.36 | Show/hide |
Query: CEFWRFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASE---KGLGCVK-APRQKPAGLL
C W + F+ +A+PL LT+ GT F W P ++++QEIKQ L+T P L +PD + F ++ D + KG+ K P ++P L
Subjt: CEFWRFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASE---KGLGCVK-APRQKPAGLL
|
|
| P08361 Gag-Pol polyprotein | 1.5e-08 | 37.5 | Show/hide |
Query: CEFWRFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASE---KGLGCVK-APRQKPAGLL
C W + F+ +A+PL LT+ GT F W P +++FQEIKQ L+T P L +PD + F ++ D + KG+ K P ++P L
Subjt: CEFWRFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASE---KGLGCVK-APRQKPAGLL
|
|
| P10394 Retrovirus-related Pol polyprotein from transposon 412 | 1.2e-08 | 28.7 | Show/hide |
Query: DKGFIPPSAEHEE-HLHQVLETLRANKLYAKFSKCEFW-RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDA
DKG +P +++ + V + + + F C ++ RF+++F+ + +T L +K PF W+ C+++F +K +L+ +L PD S F I +DA
Subjt: DKGFIPPSAEHEE-HLHQVLETLRANKLYAKFSKCEFW-RFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDA
Query: SEKGLGCV
S++ G V
Subjt: SEKGLGCV
|
|
| P26810 Gag-Pol polyprotein | 3.3e-08 | 36.36 | Show/hide |
Query: CEFWRFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASE---KGLGCVK-APRQKPAGLL
C W + F+ +A+PL LT+ GT F W P ++++QEIKQ L+T P L +PD + F ++ D + KG+ K P ++P L
Subjt: CEFWRFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASE---KGLGCVK-APRQKPAGLL
|
|
| Q7SVK7 Gag-pol polyprotein | 2.6e-08 | 36.36 | Show/hide |
Query: CEFWRFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASE---KGLGCVK-APRQKPAGLL
C W + F+ +A+PL LT+ GT F W P ++++QEIKQ L+T P L +PD + F ++ D + KG+ K P ++P L
Subjt: CEFWRFVEDFSRIASPLTELTRKGTPFFWSPACERSFQEIKQKLVTTPVLTVPDGSGNFVIYSDASE---KGLGCVK-APRQKPAGLL
|
|
