CuGenDBv2

Gene ID	Pay0021433
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonuclease H
Genome location	chr03:4783034..4783551
RNA-Seq Expression	Pay0021433
Synteny	Pay0021433
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033845.1 uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa]

1.5e-64

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Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF
        MDPIKYIFEK SL GRIAKWQVL  EYDIIYVTR  +KGSAI DCLA+ PVEDYEPMK EF DEDVM VSDT QDT+IWTMFFDGATN+VGHGVGAILT 
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF

Query:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
         +GKSYPLT KLYF+CT+NMA  +             IKKLQVY DSLL IHQLN EWET DSKLIPY+KYI
Subjt:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

XP_008447313.1 PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo]

3.1e-54

62.21

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Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF
        MDPIKYIFEKPSLS +IAKW VL  E+DI+Y+TR  +KGS I DCL +LP+EDYEPMKF+FLDED+MT+ +T  DT  WTM FD ATNKVGHG+G  L  
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF

Query:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        P+ K YP T KLYF+CTNNM   K             IK L+V  DSLLV+H+LN E+ETRD+K IPYN YI
Subjt:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

XP_016899404.1 PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo]

1.3e-79

87.79

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Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF
        MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYE MKFEFLDEDVMTVSDTPQDT+IWTMFFDGATN+VGHGVGAILTF
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF

Query:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        P+GKSYPLTAKLYF+CTNNMA  +             IKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
Subjt:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

XP_022716542.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111275425 [Durio zibethinus]

8.5e-52

61.05

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Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF
        +DPIKYIFEKPSL+GRIA+WQV+ SEYDIIYVT+  +KGSAI + LAD  VEDYEPMK +FLDEDVM + +       W M+FDGA N +GHG+GAIL  
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF

Query:  PNGKSYPLTAKLYFNCTNNMANM------------KHIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        P+G  YP+TA+L FNCTNN+A              K IK L V+ DS LVI+QL  EWETRDSKLI Y+KYI
Subjt:  PNGKSYPLTAKLYFNCTNNMANM------------KHIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

XP_022751308.1 uncharacterized protein LOC111300005, partial [Durio zibethinus]

9.4e-51

60.47

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Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF
        +DPIKYIFEKPSL+GRIA+WQV+ SEYDIIYVT+  +KGSAI + LAD  VEDYEPMK +F DEDVM + +       W M+FDGA N +GHG+GAIL  
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF

Query:  PNGKSYPLTAKLYFNCTNNMANM------------KHIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        P+G  YP+TA+L FNCTNN+A              K IK L V+ DS LVI+QL  EWETRDSKLI Y+KYI
Subjt:  PNGKSYPLTAKLYFNCTNNMANM------------KHIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BH42 uncharacterized protein LOC103489784

1.5e-54

62.21

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Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF
        MDPIKYIFEKPSLS +IAKW VL  E+DI+Y+TR  +KGS I DCL +LP+EDYEPMKF+FLDED+MT+ +T  DT  WTM FD ATNKVGHG+G  L  
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF

Query:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        P+ K YP T KLYF+CTNNM   K             IK L+V  DSLLV+H+LN E+ETRD+K IPYN YI
Subjt:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

A0A1S4DTT9 uncharacterized protein LOC107990505

6.1e-80

87.79

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Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF
        MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYE MKFEFLDEDVMTVSDTPQDT+IWTMFFDGATN+VGHGVGAILTF
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF

Query:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        P+GKSYPLTAKLYF+CTNNMA  +             IKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
Subjt:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

A0A5A7UKV4 Retrovirus-related Pol polyprotein from transposon 17.6

6.1e-80

87.79

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Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF
        MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYE MKFEFLDEDVMTVSDTPQDT+IWTMFFDGATN+VGHGVGAILTF
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF

Query:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        P+GKSYPLTAKLYF+CTNNMA  +             IKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
Subjt:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

A0A5D3BPI8 RNase H domain-containing protein

7.2e-65

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Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF
        MDPIKYIFEK SL GRIAKWQVL  EYDIIYVTR  +KGSAI DCLA+ PVEDYEPMK EF DEDVM VSDT QDT+IWTMFFDGATN+VGHGVGAILT 
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF

Query:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
         +GKSYPLT KLYF+CT+NMA  +             IKKLQVY DSLL IHQLN EWET DSKLIPY+KYI
Subjt:  PNGKSYPLTAKLYFNCTNNMANMK------------HIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

A0A6P5WLA5 Ribonuclease H

4.1e-52

61.05

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Query:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF
        +DPIKYIFEKPSL+GRIA+WQV+ SEYDIIYVT+  +KGSAI + LAD  VEDYEPMK +FLDEDVM + +       W M+FDGA N +GHG+GAIL  
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTF

Query:  PNGKSYPLTAKLYFNCTNNMANM------------KHIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI
        P+G  YP+TA+L FNCTNN+A              K IK L V+ DS LVI+QL  EWETRDSKLI Y+KYI
Subjt:  PNGKSYPLTAKLYFNCTNNMANM------------KHIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATCCTATAAAGTACATTTTTGAAAAGCCATCCTTGTCTGGACGAATAGCTAAATGGCAGGTGTTGCCATCCGAGTATGATATCATCTATGTTACAAGAAATGTCGT
GAAAGGAAGTGCAATTACCGATTGTTTAGCTGATTTGCCAGTCGAAGACTATGAACCAATGAAATTTGAATTTCTAGATGAGGACGTCATGACAGTATCAGATACACCTC
AAGATACAGATATATGGACAATGTTCTTTGATGGAGCCACAAATAAGGTAGGACATGGTGTGGGGGCTATTCTAACATTTCCTAATGGAAAATCGTATCCTCTAACTGCT
AAGTTGTACTTTAATTGCACAAATAACATGGCTAATATGAAACATATTAAGAAGTTGCAAGTTTATGAAGATTCTCTCTTAGTAATACATCAGCTCAATAGGGAATGGGA
GACAAGAGACTCTAAATTGATTCCCTACAACAAGTATATTTGA

mRNA sequence

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Protein sequence

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MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYEPMKFEFLDEDVMTVSDTPQDTDIWTMFFDGATNKVGHGVGAILTFPNGKSYPLTA
KLYFNCTNNMANMKHIKKLQVYEDSLLVIHQLNREWETRDSKLIPYNKYI

Pay0021433 (gene) of Melon (Payzawat) v1 genome