CuGenDBv2

Gene ID	Pay0021438
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Transcription termination factor like
Genome location	chr04:24775214..24775889
RNA-Seq Expression	Pay0021438
Synteny	Pay0021438
Gene Ontology terms	GO:0005737 - cytoplasm (cellular component) GO:0012505 - endomembrane system (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0098588 - bounding membrane of organelle (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581607.1 hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia]

8.3e-25

76.92

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Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS-------PSSVRRGRSDD
        M  I E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR LAALSDLPPGGELS       PSSVRR RSDD
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS-------PSSVRRGRSDD

KAG7018107.1 hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.3e-25

76.92

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Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS-------PSSVRRGRSDD
        M  I E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR LAALSDLPPGGELS       PSSVRR RSDD
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS-------PSSVRRGRSDD

XP_008461750.1 PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]

1.7e-38

100

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Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
        MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL

XP_011651805.2 uncharacterized protein LOC105434941 [Cucumis sativus]

7.0e-32

84.21

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Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS-------PSSVRRGRSDDGCKL
        MTPI +TDAGEMFVRIAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFLAALSDLPPGGELS       PSS RR RSDDG +L
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS-------PSSVRRGRSDDGCKL

XP_038905322.1 uncharacterized protein LOC120091388 [Benincasa hispida]

2.1e-28

81.52

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Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS-------PSSVRRGRSDDG
        MTPI E+D  EMFV+IAMF FVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGE+S       PSS RR  SDDG
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS-------PSSVRRGRSDDG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CFW1 uncharacterized protein LOC103500281

8.3e-39

100

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Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
        MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL

A0A444DLD0 Transmembrane 9 superfamily member

4.0e-17

60.49

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Query:  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD
        I+     ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGGE SPSS  R  +DD
Subjt:  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD

A0A4S8IZ19 Uncharacterized protein

5.3e-17

60.49

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Query:  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD
        I+     ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGGE SPSS  R  +DD
Subjt:  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD

A0A5A7UC63 Uncharacterized protein

8.3e-39

100

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Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
        MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL

M0RJ50 Uncharacterized protein

1.5e-16

64.86

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Query:  EMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD
        ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGGE SPSS  R  +DD
Subjt:  EMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05575.1 unknown protein

7.8e-13

53.73

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Query:  MFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSSV
        M +++++F  +Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GGE+SPS++
Subjt:  MFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSSV

AT2G31945.1 unknown protein

3.5e-13

57.35

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Query:  GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSS
        G M +++A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR LAAL D+P G ++SPSS
Subjt:  GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSS

Sequences

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CDS sequence

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ATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTT
CTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTC
CGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAA

mRNA sequence

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GAACTTTCCTTGCAAAGCTCTCTCTCTTACCAACATGGCGGCTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAACCCTCAAAACCTCCATTTT
CTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGG
CGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCA
GCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGAT
GACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAAAAGAGTAGGGGGTGATTTA
TGTTATTTGTTAAAAGTAGAGGGGTTGGTTTGGTGAATTCTGATTATTTGTATTTGTTATTTGAATGATTCTTTTGTTCTTTGGTAATGGTAATGCAAATTATTTGACTT
ATTCATCCATTTAAAA

Protein sequence

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MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL

Pay0021438 (gene) of Melon (Payzawat) v1 genome