; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0021488 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0021488
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:3530944..3532241
RNA-Seq ExpressionPay0021488
SyntenyPay0021488
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036574.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.5e-5470.59Show/hide
Query:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS
        LG    S D   F R     QT  GI+LLL YVDDMII  D+PQAISDLQC LGKHFEMKD   LNYFLGLEI S S+ Y LSQA+YASDLL RS ITDS
Subjt:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS

Query:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
        A   TPLDPNVRLTPFDGVPL+DPT+YRQLVG LIYLTVT  DIA+A+HI+ QFM  PRTIHFT V  IL
Subjt:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.5e-5470.59Show/hide
Query:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS
        LG    S D   F R     QT  GI+LLL YVDDMII  D+PQAISDLQC LGKHFEMKD   LNYFLGLEI S S+ Y LSQA+YASDLL RS ITDS
Subjt:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS

Query:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
        A   TPLDPNVRLTPFDGVPL+DPT+YRQLVG LIYLTVT  DIA+A+HI+ QFM  PRTIHFT V  IL
Subjt:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL

KAA0055053.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.2e-8298.76Show/hide
Query:  LLSLQNPCALGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDL
        LLSLQNPCALGLPFISCDEPEFAR+RRSTQTSLGIILLLSYV DMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDL
Subjt:  LLSLQNPCALGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDL

Query:  LTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIG
        LTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIG
Subjt:  LTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIG

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.5e-5470.59Show/hide
Query:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS
        LG    S D   F R     QT  GI+LLL YVDDMII  D+PQAISDLQC LGKHFEMKD   LNYFLGLEI S S+ Y LSQA+YASDLL RS ITDS
Subjt:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS

Query:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
        A   TPLDPNVRLTPFDGVPL+DPT+YRQLVG LIYLTVT  DIA+A+HI+ QFM  PRTIHFT V  IL
Subjt:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL

XP_016899402.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]1.9e-9598.9Show/hide
Query:  MGLLSLQNPCALGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYAS
        MGLLSLQNPCALGLPFISCDEPEFAR+RRSTQTSLGIILLLSYV DMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYAS
Subjt:  MGLLSLQNPCALGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYAS

Query:  DLLTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHILY
        DLLTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHILY
Subjt:  DLLTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHILY

TrEMBL top hitse value%identityAlignment
A0A1S4DTS7 uncharacterized mitochondrial protein AtMg00810-like9.0e-9698.9Show/hide
Query:  MGLLSLQNPCALGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYAS
        MGLLSLQNPCALGLPFISCDEPEFAR+RRSTQTSLGIILLLSYV DMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYAS
Subjt:  MGLLSLQNPCALGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYAS

Query:  DLLTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHILY
        DLLTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHILY
Subjt:  DLLTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHILY

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-5470.59Show/hide
Query:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS
        LG    S D   F R     QT  GI+LLL YVDDMII  D+PQAISDLQC LGKHFEMKD   LNYFLGLEI S S+ Y LSQA+YASDLL RS ITDS
Subjt:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS

Query:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
        A   TPLDPNVRLTPFDGVPL+DPT+YRQLVG LIYLTVT  DIA+A+HI+ QFM  PRTIHFT V  IL
Subjt:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-5470.59Show/hide
Query:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS
        LG    S D   F R     QT  GI+LLL YVDDMII  D+PQAISDLQC LGKHFEMKD   LNYFLGLEI S S+ Y LSQA+YASDLL RS ITDS
Subjt:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS

Query:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
        A   TPLDPNVRLTPFDGVPL+DPT+YRQLVG LIYLTVT  DIA+A+HI+ QFM  PRTIHFT V  IL
Subjt:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL

A0A5D3DLB3 Putative mitochondrial protein2.5e-8298.76Show/hide
Query:  LLSLQNPCALGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDL
        LLSLQNPCALGLPFISCDEPEFAR+RRSTQTSLGIILLLSYV DMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDL
Subjt:  LLSLQNPCALGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDL

Query:  LTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIG
        LTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIG
Subjt:  LTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIG

A0A5D3DWU7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-5470.59Show/hide
Query:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS
        LG    S D   F R     QT  GI+LLL YVDDMII  D+PQAISDLQC LGKHFEMKD   LNYFLGLEI S S+ Y LSQA+YASDLL RS ITDS
Subjt:  LGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDS

Query:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
        A   TPLDPNVRLTPFDGVPL+DPT+YRQLVG LIYLTVT  DIA+A+HI+ QFM  PRTIHFT V  IL
Subjt:  AISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.1e-0932.68Show/hide
Query:  ILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEIL--SLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRL------TPFDG
        I+LL YVDDM+I+  +   I+ L+  L K F+MKD       LG++I+    S    LSQ +Y   +L R ++ ++    TPL  +++L      T  + 
Subjt:  ILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEIL--SLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRL------TPFDG

Query:  VPLDDPTMYRQLVGILIYLTV-TSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
                Y   VG L+Y  V T  DIAHA+ ++ +F+  P   H+  V  IL
Subjt:  VPLDDPTMYRQLVGILIYLTV-TSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL

P25600 Putative transposon Ty5-1 protein YCL074W2.1e-0930.46Show/hide
Query:  TSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSN-NYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVP
        TS G I +  YVDD+++ + +P+    ++  L K + MKD   ++ FLGL I   SN +  LS   Y +   + S I    ++ TPL  +  L       
Subjt:  TSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSN-NYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVP

Query:  LDDPTMYRQLVGILIYLTVTSL-DIAHAIHIIGQFMPTPRTIHFTNVFHIL
        L D T Y+ +VG L++   T   DI++ + ++ +F+  PR IH  +   +L
Subjt:  LDDPTMYRQLVGILIYLTVTSL-DIAHAIHIIGQFMPTPRTIHFTNVFHIL

P92519 Uncharacterized mitochondrial protein AtMg008104.5e-1233.1Show/hide
Query:  LLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYR
        LL YVDD+++   +   ++ L   L   F MKD   ++YFLG++I +  +   LSQ +YA  +L  + + D     TPL P    +        DP+ +R
Subjt:  LLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYR

Query:  QLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
         +VG L YLT+T  DI++A++I+ Q M  P    F  +  +L
Subjt:  QLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.0e-2037.33Show/hide
Query:  QTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVP
        Q    I+ +L YVDD++I  ++P  + +   +L + F +KD E L+YFLG+E   +     LSQ RY  DLL R+++  +    TP+ P+ +L+ + G  
Subjt:  QTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVP

Query:  LDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
        L DPT YR +VG L YL  T  DI++A++ + QFM  P   H   +  IL
Subjt:  LDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.2e-1734.67Show/hide
Query:  QTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVP
        Q    II +L YVDD++I  ++   +     +L + F +K+ E L+YFLG+E   +     LSQ RY  DLL R+++  +    TP+  + +LT   G  
Subjt:  QTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVP

Query:  LDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
        L DPT YR +VG L YL  T  D+++A++ + Q+M  P   H+  +  +L
Subjt:  LDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.4e-2137.33Show/hide
Query:  TSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVPL
        T+   + +L YVDD+II S+N  A+ +L+  L   F+++D   L YFLGLEI   +    + Q +YA DLL  + +     S  P+DP+V  +   G   
Subjt:  TSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVPL

Query:  DDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHILY
         D   YR+L+G L+YL +T LDI+ A++ + QF   PR  H   V  IL+
Subjt:  DDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHILY

ATMG00810.1 DNA/RNA polymerases superfamily protein3.2e-1333.1Show/hide
Query:  LLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYR
        LL YVDD+++   +   ++ L   L   F MKD   ++YFLG++I +  +   LSQ +YA  +L  + + D     TPL P    +        DP+ +R
Subjt:  LLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTRSSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYR

Query:  QLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL
         +VG L YLT+T  DI++A++I+ Q M  P    F  +  +L
Subjt:  QLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCTCCTATCCCTTCAAAATCCATGTGCTCTCGGCCTACCATTTATCTCTTGTGATGAACCTGAATTTGCACGTGTCCGTCGCTCCACCCAGACGTCTCTT
GGTATTATTCTCCTTCTTTCATATGTTGATGACATGATTATTATAAGTGATAACCCTCAAGCCATATCTGATTTGCAATGTTCCCTAGGCAAGCACTTTGAGATG
AAGGATTCAGAAACCCTAAACTATTTTCTTGGTCTTGAGATCTTATCCTTGTCTAATAACTACTGCTTATCTCAAGCAAGATATGCCTCTGATCTTCTCACTCGA
TCTAGTATCACTGATTCTGCCATATCCTTAACACCACTGGATCCAAATGTGCGACTCACTCCTTTTGATGGTGTTCCTCTTGACGATCCCACTATGTATCGGCAA
CTTGTTGGCATCCTCATTTACTTAACTGTGACTAGCCTAGATATTGCGCATGCAATTCACATTATTGGTCAATTCATGCCCACTCCTCGTACTATTCACTTCACT
AATGTCTTTCATATTCTATACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCTCCTATCCCTTCAAAATCCATGTGCTCTCGGCCTACCATTTATCTCTTGTGATGAACCTGAATTTGCACGTGTCCGTCGCTCCACCCAGACGTCTCTT
GGTATTATTCTCCTTCTTTCATATGTTGATGACATGATTATTATAAGTGATAACCCTCAAGCCATATCTGATTTGCAATGTTCCCTAGGCAAGCACTTTGAGATG
AAGGATTCAGAAACCCTAAACTATTTTCTTGGTCTTGAGATCTTATCCTTGTCTAATAACTACTGCTTATCTCAAGCAAGATATGCCTCTGATCTTCTCACTCGA
TCTAGTATCACTGATTCTGCCATATCCTTAACACCACTGGATCCAAATGTGCGACTCACTCCTTTTGATGGTGTTCCTCTTGACGATCCCACTATGTATCGGCAA
CTTGTTGGCATCCTCATTTACTTAACTGTGACTAGCCTAGATATTGCGCATGCAATTCACATTATTGGTCAATTCATGCCCACTCCTCGTACTATTCACTTCACT
AATGTCTTTCATATTCTATACTAA
Protein sequenceShow/hide protein sequence
MGLLSLQNPCALGLPFISCDEPEFARVRRSTQTSLGIILLLSYVDDMIIISDNPQAISDLQCSLGKHFEMKDSETLNYFLGLEILSLSNNYCLSQARYASDLLTR
SSITDSAISLTPLDPNVRLTPFDGVPLDDPTMYRQLVGILIYLTVTSLDIAHAIHIIGQFMPTPRTIHFTNVFHILY