CuGenDBv2

Gene ID	Pay0021509
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonuclease H
Genome location	chr04:22736732..22737378
RNA-Seq Expression	Pay0021509
Synteny	Pay0021509
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]

1.4e-69

78.21

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Query:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------
        M  DGASNELG GIGVVLISP+GKVFPLTAKLCF+ THNIAEY+ACIMG QVACD++IKKLKVL DSMLVIHQVKEEWETRD   +              
Subjt:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------

Query:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK
             HV REDNRMADALA LAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNK WYFDIKQY K REYPYEASENDK
Subjt:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

3.4e-68

82.93

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Query:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQPIHHVHREDNRMA
        M  DGASNELG GIGVVLISP+GKVFPLTAKLCF+ T+NIAEY+ACIMG QVACD++IKKLKVL DSMLVIHQVKEEWETRD            EDNRMA
Subjt:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQPIHHVHREDNRMA

Query:  DALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK
        DALA LAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNK WYFDIKQY K REYPYEASENDK
Subjt:  DALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]

7.6e-68

77.09

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Query:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------
        M  DGASNELG  IGVVLISP+GKVFPLTAKLCF+ THNIAEY+ACIMG QVACD++IKKLKVL DSMLVIHQVKEEWETR    +              
Subjt:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------

Query:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK
             HV REDNRMADALA LAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNK WYFDIKQY K REYPYEASENDK
Subjt:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK

KAA0055609.1 uncharacterized protein E6C27_scaffold222G00930 [Cucumis melo var. makuwa]

9.0e-69

77.47

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Query:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQP------------
        M  DGASNELG GIGVVLISP+GKVFPLTAKLCF+ THNIAEY+ACIMG QVACD++IKKLKVL DSMLVIHQVKEEWETRD   L P            
Subjt:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQP------------

Query:  ----IHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDKLA
              HV RE+N+MADALA LAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNK WYFDIKQY K REYPYEASENDK A
Subjt:  ----IHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDKLA

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]

6.2e-70

77.9

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Query:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------
        M  DGASNELG GIGVVLISP+GKVFPLTAKLCF+ THNIAEY+ACIMG QVACD++IKKLKVL DSMLVIHQVKEEWETRD   +              
Subjt:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------

Query:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDKLA
             HV REDNRMADALA LAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNK WYFDIKQY K REYPYEASENDK A
Subjt:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDKLA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1X2 Ribonuclease H

6.7e-70

78.21

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Query:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------
        M  DGASNELG GIGVVLISP+GKVFPLTAKLCF+ THNIAEY+ACIMG QVACD++IKKLKVL DSMLVIHQVKEEWETRD   +              
Subjt:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------

Query:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK
             HV REDNRMADALA LAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNK WYFDIKQY K REYPYEASENDK
Subjt:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

1.7e-68

82.93

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Query:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQPIHHVHREDNRMA
        M  DGASNELG GIGVVLISP+GKVFPLTAKLCF+ T+NIAEY+ACIMG QVACD++IKKLKVL DSMLVIHQVKEEWETRD            EDNRMA
Subjt:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQPIHHVHREDNRMA

Query:  DALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK
        DALA LAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNK WYFDIKQY K REYPYEASENDK
Subjt:  DALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK

A0A5A7T7R4 Ribonuclease H

3.7e-68

77.09

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Query:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------
        M  DGASNELG  IGVVLISP+GKVFPLTAKLCF+ THNIAEY+ACIMG QVACD++IKKLKVL DSMLVIHQVKEEWETR    +              
Subjt:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------

Query:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK
             HV REDNRMADALA LAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNK WYFDIKQY K REYPYEASENDK
Subjt:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDK

A0A5A7UQ60 Ribonuclease H

4.4e-69

77.47

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Query:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQP------------
        M  DGASNELG GIGVVLISP+GKVFPLTAKLCF+ THNIAEY+ACIMG QVACD++IKKLKVL DSMLVIHQVKEEWETRD   L P            
Subjt:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQP------------

Query:  ----IHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDKLA
              HV RE+N+MADALA LAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNK WYFDIKQY K REYPYEASENDK A
Subjt:  ----IHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDKLA

A0A5D3DMD2 Ribonuclease H

3.0e-70

77.9

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Query:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------
        M  DGASNELG GIGVVLISP+GKVFPLTAKLCF+ THNIAEY+ACIMG QVACD++IKKLKVL DSMLVIHQVKEEWETRD   +              
Subjt:  MHLDGASNELG-GIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQ-------------

Query:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDKLA
             HV REDNRMADALA LAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNK WYFDIKQY K REYPYEASENDK A
Subjt:  --PIHHVHREDNRMADALAILAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDKLA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCATTTGGATGGTGCCTCAAATGAGTTGGGAGGTATTGGAGTTGTACTAATTTCTCCAGATGGAAAGGTTTTCCCCCTAACAGCCAAGTTATGTTTTAAATACACTCA
CAACATCGCTGAATATGATGCTTGCATTATGGGATTTCAGGTAGCATGCGATGTGACTATTAAAAAGTTGAAAGTTTTGCGTGACTCAATGTTAGTAATACATCAAGTCA
AGGAAGAATGGGAAACAAGAGACACGCTAACCTTACAGCCAATACACCATGTTCATAGGGAAGACAATCGAATGGCAGATGCATTAGCCATCCTGGCAGTGATGTTTGAT
CTTAATCTTGAATTTGAACTTCATCCAATCCAAATTACAAAGCGAGATGTGCCAGCATATTGCATGAATGTTGGAAATGATAACAAGTCCTGGTATTTTGACATTAAGCA
GTACAAAAAGTATAGAGAATATCCATATGAAGCTTCTGAAAATGATAAACTGGCGAAGTTCTTTATAAAAGAAACCACGATATGGTGCTCCTTCGGTGTGTTAATGAGGA
GGAAGCAAAACAAATTATGA

mRNA sequence

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Protein sequence

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MHLDGASNELGGIGVVLISPDGKVFPLTAKLCFKYTHNIAEYDACIMGFQVACDVTIKKLKVLRDSMLVIHQVKEEWETRDTLTLQPIHHVHREDNRMADALAILAVMFD
LNLEFELHPIQITKRDVPAYCMNVGNDNKSWYFDIKQYKKYREYPYEASENDKLAKFFIKETTIWCSFGVLMRRKQNKL

Pay0021509 (gene) of Melon (Payzawat) v1 genome