; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0021762 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0021762
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag-pol polyprotein
Genome locationchr02:18349605..18353981
RNA-Seq ExpressionPay0021762
SyntenyPay0021762
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032736.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.4e-7658.78Show/hide
Query:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV
        M EDESVSDYNKRVLEI NE LLL E IPDSKIVRKV++SLP KFDMKVT IEEAHDIT LKLDE FG LLTFEMATA+RESKKGKGIAFKSTHVS EA 
Subjt:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV

Query:  SDTEANMDE------------------------------NDDG-----TTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKN
         DTEANMDE                              +DDG     T +  +EN+D  S+  ++ K  +  I +         ++ +C     + +  
Subjt:  SDTEANMDE------------------------------NDDG-----TTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKN

Query:  FRERIQDLIEENERLMFVISSLKLKLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL
         +ER QDL+ +NERLM+V+SSLKLK RE       T DDAWYFDSGCSRHMTGNRSYFTN+ +CVTG+VTFGDGAKE IIAKGNI K++LPRLND+
Subjt:  FRERIQDLIEENERLMFVISSLKLKLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL

KAA0040865.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.9e-8050.55Show/hide
Query:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV
        MTEDES SDYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFD+KVT IEEAHDIT LKLDE FG LLTFEMATA+RESKKGKGIAFKSTH+  EAV
Subjt:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV

Query:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFR---------------------------------
        SDT+ANMDE                                CRECGGV HYQAEC  +LRKQ+KNFR                                 
Subjt:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFR---------------------------------

Query:  --------------------------------ERIQDLIEENERLMFVISSLKLKLR----------------------------------EIVFTSVQT
                                        E+IQDLI ENE + + + SL++ L+                                   +     +T
Subjt:  --------------------------------ERIQDLIEENERLMFVISSLKLKLR----------------------------------EIVFTSVQT

Query:  TDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDLIWMKNM
        TDDAWYFDSGCS+HMTGNRSYFTNL +CVTGHVTFGDGAKEKIIAKGNIDKN+LPRLND+ ++  +
Subjt:  TDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDLIWMKNM

KAA0060361.1 gag-pol polyprotein, related [Cucumis melo var. makuwa]1.7e-7655.84Show/hide
Query:  RKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRC
        +KFDMKVT IEEAHDIT LKLDE F  LLTFEM T +RESKKGK  AFKSTHV GE     EA    NDDG+TRRNN+N DRRSDGYIKKKEGDRRIFRC
Subjt:  RKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRC

Query:  RECGGVGHYQAECPPFLRKQKKNFR-----------------------------------ERIQDLIEENERLMFVISSLKLKLREI------VFTSV--
        RECGGVGHYQAECP FLR QKK+FR                                   E+IQDLIEENER M VISSLKLKLRE+      +  SV  
Subjt:  RECGGVGHYQAECPPFLRKQKKNFR-----------------------------------ERIQDLIEENERLMFVISSLKLKLREI------VFTSV--

Query:  -------------------------------------------------QTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNI
                                                         +TTDDAWYFDSGCSRHMTGNRSYF NLK+ VT HVTFGDGAK K+IAKGNI
Subjt:  -------------------------------------------------QTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNI

Query:  DKNNLPRLNDLIWMKNM
        DKNNLPRLND+ ++  +
Subjt:  DKNNLPRLNDLIWMKNM

KAA0066861.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.6e-8736.77Show/hide
Query:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV
        MT+DES+ DYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFDMKV  IEEAHDIT LKLDE FG L TFEMAT +RES                 V
Subjt:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV

Query:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE----------------------RIQDLIEENE
          +      ND+G TRRNNENSDRRS GY+KKKEG+R+IFRCRECGGVGHYQAECP FLRKQKKNFR                       RI D   +++
Subjt:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE----------------------RIQDLIEENE

Query:  RLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL-------------
        R   + S LK       R  +     T DDAWYFDSGCSRHMTGNRSYFTNL +CVT HVTFGDGAK KIIAKGNID+++LPRLN++             
Subjt:  RLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------IW----------------------------MKN------------------
                                                         +W                            MKN                  
Subjt:  -------------------------------------------------IW----------------------------MKN------------------

Query:  ---------------------------------------------------------------------------------------------MLHEY--
                                                                                                     M++ Y  
Subjt:  ---------------------------------------------------------------------------------------------MLHEY--

Query:  --------DFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLG
                D D D MTLY +NMSAID  KNPVQHSRTKHI+IRHHFIRELVEDKVI+LDHIRSNLQL DIFTKPLDA+SF++LRAGLG
Subjt:  --------DFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLG

TYK28009.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.6e-8736.77Show/hide
Query:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV
        MT+DES+ DYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFDMKV  IEEAHDIT LKLDE FG L TFEMAT +RES                 V
Subjt:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV

Query:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE----------------------RIQDLIEENE
          +      ND+G TRRNNENSDRRS GY+KKKEG+R+IFRCRECGGVGHYQAECP FLRKQKKNFR                       RI D   +++
Subjt:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE----------------------RIQDLIEENE

Query:  RLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL-------------
        R   + S LK       R  +     T DDAWYFDSGCSRHMTGNRSYFTNL +CVT HVTFGDGAK KIIAKGNID+++LPRLN++             
Subjt:  RLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------IW----------------------------MKN------------------
                                                         +W                            MKN                  
Subjt:  -------------------------------------------------IW----------------------------MKN------------------

Query:  ---------------------------------------------------------------------------------------------MLHEY--
                                                                                                     M++ Y  
Subjt:  ---------------------------------------------------------------------------------------------MLHEY--

Query:  --------DFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLG
                D D D MTLY +NMSAID  KNPVQHSRTKHI+IRHHFIRELVEDKVI+LDHIRSNLQL DIFTKPLDA+SF++LRAGLG
Subjt:  --------DFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLG

TrEMBL top hitse value%identityAlignment
A0A5A7SRQ8 Gag-pol polyprotein3.1e-7658.78Show/hide
Query:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV
        M EDESVSDYNKRVLEI NE LLL E IPDSKIVRKV++SLP KFDMKVT IEEAHDIT LKLDE FG LLTFEMATA+RESKKGKGIAFKSTHVS EA 
Subjt:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV

Query:  SDTEANMDE------------------------------NDDG-----TTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKN
         DTEANMDE                              +DDG     T +  +EN+D  S+  ++ K  +  I +         ++ +C     + +  
Subjt:  SDTEANMDE------------------------------NDDG-----TTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKN

Query:  FRERIQDLIEENERLMFVISSLKLKLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL
         +ER QDL+ +NERLM+V+SSLKLK RE       T DDAWYFDSGCSRHMTGNRSYFTN+ +CVTG+VTFGDGAKE IIAKGNI K++LPRLND+
Subjt:  FRERIQDLIEENERLMFVISSLKLKLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL

A0A5A7THJ5 Gag-pol polyprotein9.3e-8150.55Show/hide
Query:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV
        MTEDES SDYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFD+KVT IEEAHDIT LKLDE FG LLTFEMATA+RESKKGKGIAFKSTH+  EAV
Subjt:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV

Query:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFR---------------------------------
        SDT+ANMDE                                CRECGGV HYQAEC  +LRKQ+KNFR                                 
Subjt:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFR---------------------------------

Query:  --------------------------------ERIQDLIEENERLMFVISSLKLKLR----------------------------------EIVFTSVQT
                                        E+IQDLI ENE + + + SL++ L+                                   +     +T
Subjt:  --------------------------------ERIQDLIEENERLMFVISSLKLKLR----------------------------------EIVFTSVQT

Query:  TDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDLIWMKNM
        TDDAWYFDSGCS+HMTGNRSYFTNL +CVTGHVTFGDGAKEKIIAKGNIDKN+LPRLND+ ++  +
Subjt:  TDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDLIWMKNM

A0A5A7V3Q5 Gag-pol polyprotein, related8.2e-7755.84Show/hide
Query:  RKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRC
        +KFDMKVT IEEAHDIT LKLDE F  LLTFEM T +RESKKGK  AFKSTHV GE     EA    NDDG+TRRNN+N DRRSDGYIKKKEGDRRIFRC
Subjt:  RKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRC

Query:  RECGGVGHYQAECPPFLRKQKKNFR-----------------------------------ERIQDLIEENERLMFVISSLKLKLREI------VFTSV--
        RECGGVGHYQAECP FLR QKK+FR                                   E+IQDLIEENER M VISSLKLKLRE+      +  SV  
Subjt:  RECGGVGHYQAECPPFLRKQKKNFR-----------------------------------ERIQDLIEENERLMFVISSLKLKLREI------VFTSV--

Query:  -------------------------------------------------QTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNI
                                                         +TTDDAWYFDSGCSRHMTGNRSYF NLK+ VT HVTFGDGAK K+IAKGNI
Subjt:  -------------------------------------------------QTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNI

Query:  DKNNLPRLNDLIWMKNM
        DKNNLPRLND+ ++  +
Subjt:  DKNNLPRLNDLIWMKNM

A0A5A7VMH8 Gag-pol polyprotein7.9e-8836.77Show/hide
Query:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV
        MT+DES+ DYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFDMKV  IEEAHDIT LKLDE FG L TFEMAT +RES                 V
Subjt:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV

Query:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE----------------------RIQDLIEENE
          +      ND+G TRRNNENSDRRS GY+KKKEG+R+IFRCRECGGVGHYQAECP FLRKQKKNFR                       RI D   +++
Subjt:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE----------------------RIQDLIEENE

Query:  RLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL-------------
        R   + S LK       R  +     T DDAWYFDSGCSRHMTGNRSYFTNL +CVT HVTFGDGAK KIIAKGNID+++LPRLN++             
Subjt:  RLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------IW----------------------------MKN------------------
                                                         +W                            MKN                  
Subjt:  -------------------------------------------------IW----------------------------MKN------------------

Query:  ---------------------------------------------------------------------------------------------MLHEY--
                                                                                                     M++ Y  
Subjt:  ---------------------------------------------------------------------------------------------MLHEY--

Query:  --------DFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLG
                D D D MTLY +NMSAID  KNPVQHSRTKHI+IRHHFIRELVEDKVI+LDHIRSNLQL DIFTKPLDA+SF++LRAGLG
Subjt:  --------DFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLG

A0A5D3DX45 Gag-pol polyprotein7.9e-8836.77Show/hide
Query:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV
        MT+DES+ DYNKRVLEITNE LLLGEKIPDSKIVRKVL+SLPRKFDMKV  IEEAHDIT LKLDE FG L TFEMAT +RES                 V
Subjt:  MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAV

Query:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE----------------------RIQDLIEENE
          +      ND+G TRRNNENSDRRS GY+KKKEG+R+IFRCRECGGVGHYQAECP FLRKQKKNFR                       RI D   +++
Subjt:  SDTEANMDENDDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRE----------------------RIQDLIEENE

Query:  RLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL-------------
        R   + S LK       R  +     T DDAWYFDSGCSRHMTGNRSYFTNL +CVT HVTFGDGAK KIIAKGNID+++LPRLN++             
Subjt:  RLMFVISSLKL----KLREIVFTSVQTTDDAWYFDSGCSRHMTGNRSYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDL-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------IW----------------------------MKN------------------
                                                         +W                            MKN                  
Subjt:  -------------------------------------------------IW----------------------------MKN------------------

Query:  ---------------------------------------------------------------------------------------------MLHEY--
                                                                                                     M++ Y  
Subjt:  ---------------------------------------------------------------------------------------------MLHEY--

Query:  --------DFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLG
                D D D MTLY +NMSAID  KNPVQHSRTKHI+IRHHFIRELVEDKVI+LDHIRSNLQL DIFTKPLDA+SF++LRAGLG
Subjt:  --------DFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLG

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.2e-1240.62Show/hide
Query:  LNDLIWMKNMLHEYDFD-QDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGV
        + + +W+K +L   +   ++ + +Y DN   I    NP  H R KHI+I++HF RE V++ VI L++I +  QL DIFTKPL A  F  LR  LG+
Subjt:  LNDLIWMKNMLHEYDFD-QDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.3e-1439.78Show/hide
Query:  DLIWMKNMLHEYDFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGV
        ++IW+K  L E    Q    +YCD+ SAID  KN + H+RTKHI++R+H+IRE+V+D+ +++  I +N    D+ TK +  N FE  +  +G+
Subjt:  DLIWMKNMLHEYDFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.4e-1144Show/hide
Query:  LYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGVCR
        +YCDN+ A     NPV HSR KHI I +HFIR  V+   +R+ H+ ++ QL D  TKPL   +F++  + +GV R
Subjt:  LYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGVCR

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.9e-1036.08Show/hide
Query:  NDLIWMKNMLHEYDFD-QDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGVCR
        ++L W+ ++L E          +YCDN+ A     NPV HSR KHI + +HFIR  V+   +R+ H+ ++ QL D  TKPL   +F++    +GV +
Subjt:  NDLIWMKNMLHEYDFD-QDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQLTDIFTKPLDANSFEHLRAGLGVCR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGAGGATGAATCAGTGTCTGATTACAATAAGAGAGTGCTTGAAATTACAAATGAACCTTTGCTGCTCGGTGAAAAAATACCTGACTCTAAAATAGTGCGGAAAGT
ACTTCAATCCTTGCCCAGGAAATTTGATATGAAAGTTACTGTCATTGAGGAAGCTCATGATATTACAATGCTGAAACTTGATGAATTCTTTGGTTTGTTGCTTACGTTTG
AGATGGCCACTGCTAATAGAGAAAGTAAGAAAGGCAAGGGAATTGCTTTTAAATCCACACATGTAAGTGGGGAGGCTGTAAGTGACACTGAAGCTAACATGGATGAGAAT
GATGATGGCACTACCAGGAGGAACAATGAAAATTCTGATAGAAGAAGTGATGGTTATATTAAGAAAAAGGAAGGTGACAGAAGAATTTTCAGGTGTAGAGAATGTGGAGG
AGTTGGTCACTATCAGGCAGAATGTCCCCCATTCCTGAGAAAACAGAAGAAAAACTTTCGTGAAAGGATTCAAGATCTTATAGAAGAAAATGAACGGTTGATGTTTGTAA
TATCTTCTCTAAAGTTAAAATTGAGAGAGATTGTCTTTACATCCGTTCAGACCACAGACGATGCGTGGTATTTTGATAGTGGGTGCTCAAGACATATGACTGGAAACAGA
TCCTACTTTACAAACTTAAAAAACTGTGTCACCGGACATGTTACCTTTGGTGATGGTGCAAAAGAAAAAATTATAGCTAAAGGTAACATAGATAAAAATAACCTACCACG
TCTAAATGATTTGATTTGGATGAAAAATATGTTGCATGAATATGACTTTGATCAGGACCTTATGACGTTGTATTGTGACAATATGAGCGCAATTGATAAATGGAAGAATC
CAGTTCAACATAGTCGAACAAAGCACATTAACATAAGACATCATTTTATTCGAGAACTTGTTGAAGATAAAGTGATTAGGCTTGATCATATTCGTTCCAACTTACAATTA
ACCGATATTTTCACTAAGCCTCTGGATGCAAATTCATTCGAACACTTACGTGCTGGTTTAGGAGTGTGTCGCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCGAGGATGAATCAGTGTCTGATTACAATAAGAGAGTGCTTGAAATTACAAATGAACCTTTGCTGCTCGGTGAAAAAATACCTGACTCTAAAATAGTGCGGAAAGT
ACTTCAATCCTTGCCCAGGAAATTTGATATGAAAGTTACTGTCATTGAGGAAGCTCATGATATTACAATGCTGAAACTTGATGAATTCTTTGGTTTGTTGCTTACGTTTG
AGATGGCCACTGCTAATAGAGAAAGTAAGAAAGGCAAGGGAATTGCTTTTAAATCCACACATGTAAGTGGGGAGGCTGTAAGTGACACTGAAGCTAACATGGATGAGAAT
GATGATGGCACTACCAGGAGGAACAATGAAAATTCTGATAGAAGAAGTGATGGTTATATTAAGAAAAAGGAAGGTGACAGAAGAATTTTCAGGTGTAGAGAATGTGGAGG
AGTTGGTCACTATCAGGCAGAATGTCCCCCATTCCTGAGAAAACAGAAGAAAAACTTTCGTGAAAGGATTCAAGATCTTATAGAAGAAAATGAACGGTTGATGTTTGTAA
TATCTTCTCTAAAGTTAAAATTGAGAGAGATTGTCTTTACATCCGTTCAGACCACAGACGATGCGTGGTATTTTGATAGTGGGTGCTCAAGACATATGACTGGAAACAGA
TCCTACTTTACAAACTTAAAAAACTGTGTCACCGGACATGTTACCTTTGGTGATGGTGCAAAAGAAAAAATTATAGCTAAAGGTAACATAGATAAAAATAACCTACCACG
TCTAAATGATTTGATTTGGATGAAAAATATGTTGCATGAATATGACTTTGATCAGGACCTTATGACGTTGTATTGTGACAATATGAGCGCAATTGATAAATGGAAGAATC
CAGTTCAACATAGTCGAACAAAGCACATTAACATAAGACATCATTTTATTCGAGAACTTGTTGAAGATAAAGTGATTAGGCTTGATCATATTCGTTCCAACTTACAATTA
ACCGATATTTTCACTAAGCCTCTGGATGCAAATTCATTCGAACACTTACGTGCTGGTTTAGGAGTGTGTCGCACTTAA
Protein sequenceShow/hide protein sequence
MTEDESVSDYNKRVLEITNEPLLLGEKIPDSKIVRKVLQSLPRKFDMKVTVIEEAHDITMLKLDEFFGLLLTFEMATANRESKKGKGIAFKSTHVSGEAVSDTEANMDEN
DDGTTRRNNENSDRRSDGYIKKKEGDRRIFRCRECGGVGHYQAECPPFLRKQKKNFRERIQDLIEENERLMFVISSLKLKLREIVFTSVQTTDDAWYFDSGCSRHMTGNR
SYFTNLKNCVTGHVTFGDGAKEKIIAKGNIDKNNLPRLNDLIWMKNMLHEYDFDQDLMTLYCDNMSAIDKWKNPVQHSRTKHINIRHHFIRELVEDKVIRLDHIRSNLQL
TDIFTKPLDANSFEHLRAGLGVCRT