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Pay0021841 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0021841
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRibonuclease H
Genome locationchr12:4647164..4648444
RNA-Seq ExpressionPay0021841
SyntenyPay0021841
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK05790.1 uncharacterized protein E5676_scaffold98G002940 [Cucumis melo var. makuwa]1.4e-4262.64Show/hide
Query:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
        MYNAAANGLAEAFNKTLCNLLKKIVSK                 TTHRTP GVTPYSLVY +EVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD

Query:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI
        EKRLEA+QALE                                         +  KWDGLYIVKEVYTNGAYKI
Subjt:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]5.4e-4262.07Show/hide
Query:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
        MYNAAANGLAEAFNKTLCNLLKKIVSK                 TTHRTPTGVTPYSLVY +E VLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD

Query:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI
        EKRLEA+QALE                                         +  KWDG YIVKEVYTNGAYKI
Subjt:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]5.4e-4262.07Show/hide
Query:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
        MYNAAANGLAEAFNKTLCNLLKKIVSK                 TTHRTPTGVTPYSLVY +E VLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD

Query:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI
        EKRLEA+QALE                                         +  KWDG YIVKEVYTNGAYKI
Subjt:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]5.4e-4262.07Show/hide
Query:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
        MYNAAANGLAEAFNKTLCNLLKKIVSK                 TTHRTPTGVTPYSLVY +E VLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD

Query:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI
        EKRLEA+QALE                                         +  KWDG YIVKEVYTNGAYKI
Subjt:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]5.4e-4262.07Show/hide
Query:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
        MYNAAANGLAEAFNKTLCNLLKKIVSK                 TTHRTPTGVTPYSLVY +E VLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD

Query:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI
        EKRLEA+QALE                                         +  KWDG YIVKEVYTNGAYKI
Subjt:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI

TrEMBL top hitse value%identityAlignment
A0A5A7U2B8 Reverse transcriptase1.1e-4059.2Show/hide
Query:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKK+VSK                 TTHRTPTGVTPYSLVY +EVVLPLEREIPSLRMA+QEGLTTEDN +LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD

Query:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI
        EKRLEA+QALE                                         +  KWDG YIVKEV+TNGAYKI
Subjt:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI

A0A5A7VE52 Integrase catalytic domain-containing protein9.9e-4260.92Show/hide
Query:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
        MYNAA NGL EAFNKTLCNLLKKIVSK                 TTHRTPTGVTPYSLVY +E VLPLEREIPSLRMAVQEGLTTEDNVKLRLQ+LEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD

Query:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI
        EKRLEA+QALE                                         +  KWDGLYIVKEVYTNGAYKI
Subjt:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI

A0A5A7VGB3 Ribonuclease H3.2e-4058.62Show/hide
Query:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKK+VSK                 TTHRTPTGVTPYSLVY +E VLPLEREIPSLRMA+QEGLTTEDN +LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD

Query:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI
        EKRLEA+QALE                                         +  KWDG YIVKEV+TNGAYKI
Subjt:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI

A0A5D3C379 Integrase catalytic domain-containing protein6.8e-4362.64Show/hide
Query:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
        MYNAAANGLAEAFNKTLCNLLKKIVSK                 TTHRTP GVTPYSLVY +EVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD

Query:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI
        EKRLEA+QALE                                         +  KWDGLYIVKEVYTNGAYKI
Subjt:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI

A0A5D3D1E5 Ribonuclease H3.2e-4058.62Show/hide
Query:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKK+VSK                 TTHRTPTGVTPYSLVY +E VLPLEREIPSLRMA+QEGLTTEDN +LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKIVSK-----------------TTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALD

Query:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI
        EKRLEA+QALE                                         +  KWDG YIVKEV+TNGAYKI
Subjt:  EKRLEAKQALE-----------------------------------------YIRKWDGLYIVKEVYTNGAYKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAATGCAGCTGCGAATGGCCTAGCAGAAGCATTCAATAAGACGTTATGCAATCTTCTAAAGAAAATTGTCTCCAAAACCACTCATCGCACTCCTACAGGGGTTAC
ACCATATTCGCTTGTTTACAGTATAGAGGTTGTCCTTCCCCTCGAAAGAGAAATCCCATCATTAAGAATGGCAGTGCAAGAAGGGTTGACTACTGAAGACAATGTCAAGT
TACGTCTTCAAGAGTTAGAAGCACTTGATGAAAAGCGATTAGAAGCTAAGCAAGCATTGGAATACATACGGAAATGGGACGGACTCTATATTGTCAAAGAAGTTTACACA
AATGGTGCGTACAAGATTCACATTCAAGTTTGTCAATTTCCTCGCAAGTCTTTGAAATCTCATGTTGCTTCTGCTTCAGCTCTATCTCATTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACAATGCAGCTGCGAATGGCCTAGCAGAAGCATTCAATAAGACGTTATGCAATCTTCTAAAGAAAATTGTCTCCAAAACCACTCATCGCACTCCTACAGGGGTTAC
ACCATATTCGCTTGTTTACAGTATAGAGGTTGTCCTTCCCCTCGAAAGAGAAATCCCATCATTAAGAATGGCAGTGCAAGAAGGGTTGACTACTGAAGACAATGTCAAGT
TACGTCTTCAAGAGTTAGAAGCACTTGATGAAAAGCGATTAGAAGCTAAGCAAGCATTGGAATACATACGGAAATGGGACGGACTCTATATTGTCAAAGAAGTTTACACA
AATGGTGCGTACAAGATTCACATTCAAGTTTGTCAATTTCCTCGCAAGTCTTTGAAATCTCATGTTGCTTCTGCTTCAGCTCTATCTCATTTTTAG
Protein sequenceShow/hide protein sequence
MYNAAANGLAEAFNKTLCNLLKKIVSKTTHRTPTGVTPYSLVYSIEVVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEAKQALEYIRKWDGLYIVKEVYT
NGAYKIHIQVCQFPRKSLKSHVASASALSHF