CuGenDBv2

Gene ID	Pay0021977
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	U2 small nuclear ribonucleoprotein A'
Genome location	chr10:23705328..23709801
RNA-Seq Expression	Pay0021977
Synteny	Pay0021977
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0006508 - proteolysis (biological process) GO:0009791 - post-embryonic development (biological process) GO:0005654 - nucleoplasm (cellular component) GO:0003677 - DNA binding (molecular function) GO:0004177 - aminopeptidase activity (molecular function) GO:0008237 - metallopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0030620 - U2 snRNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR003603 - U2A'/phosphoprotein 32 family A, C-terminal IPR032675 - Leucine-rich repeat domain superfamily IPR044640 - U2 small nuclear ribonucleoprotein A'

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032093.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa]

2.4e-21

96.3

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Query:  ASGSYKAPATVHDRFKQSNKTCLDDAKTEVARYLDEARIDCMGDEYLDLLTWWK
        +SGSYKA ATVHDRFKQSNKTCLDDAKTEVARYLDEARIDCMGDEYLDLLTWWK
Subjt:  ASGSYKAPATVHDRFKQSNKTCLDDAKTEVARYLDEARIDCMGDEYLDLLTWWK

KAA0039871.1 U2 small nuclear ribonucleoprotein A' [Cucumis melo var. makuwa]

2.1e-22

71.43

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Query:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA
        K+PNYRLYVIHKLKSVRVLDFKKVRNKERLEA+NLFSSKEVEEE KKESVKT + GEVEK SKP                     AAIVNSQTLEEVA
Subjt:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA

XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]

2.1e-22

71.43

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Query:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA
        K+PNYRLYVIHKLKSVRVLDFKKVRNKERLEA+NLFSSKEVEEE KKESVKT + GEVEK SKP                     AAIVNSQTLEEVA
Subjt:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA

XP_008459932.1 PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo]

5.7e-23

72.45

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Query:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA
        K+PNYRLYVIHKLKSVRVLDFKKVRNKERLEA+NLFSSKEVEEE KKESVKT +SGEVEK SKP                     AAIVNSQTLEEVA
Subjt:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]

3.1e-21

58.33

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Query:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA--
        K+PNYRLYVIHKLKSVRVLDFKKVRNKERLEA+NLFSSKEVEEE KKESVK  + GEVE  SKP                     AAIVNSQTLEEVA  
Subjt:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA--

Query:  -----SGSYKAPATVHDRFKQSNKTCLDDAKT
             SG   A   + D     N T   D KT
Subjt:  -----SGSYKAPATVHDRFKQSNKTCLDDAKT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9F1 LRRcap domain-containing protein

1.0e-22

71.43

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Query:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA
        K+PNYRLYVIHKLKSVRVLDFKKVRNKERLEA+NLFSSKEVEEE KKESVKT + GEVEK SKP                     AAIVNSQTLEEVA
Subjt:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA

A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'

2.7e-23

72.45

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Query:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA
        K+PNYRLYVIHKLKSVRVLDFKKVRNKERLEA+NLFSSKEVEEE KKESVKT +SGEVEK SKP                     AAIVNSQTLEEVA
Subjt:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA

A0A5A7SP27 Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3

1.2e-21

96.3

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Query:  ASGSYKAPATVHDRFKQSNKTCLDDAKTEVARYLDEARIDCMGDEYLDLLTWWK
        +SGSYKA ATVHDRFKQSNKTCLDDAKTEVARYLDEARIDCMGDEYLDLLTWWK
Subjt:  ASGSYKAPATVHDRFKQSNKTCLDDAKTEVARYLDEARIDCMGDEYLDLLTWWK

A0A5D3DMX8 U2 small nuclear ribonucleoprotein A

1.0e-22

71.43

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Query:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA
        K+PNYRLYVIHKLKSVRVLDFKKVRNKERLEA+NLFSSKEVEEE KKESVKT + GEVEK SKP                     AAIVNSQTLEEVA
Subjt:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA

E5GB46 U2 small nuclear ribonucleoprotein a

2.7e-23

72.45

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Query:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA
        K+PNYRLYVIHKLKSVRVLDFKKVRNKERLEA+NLFSSKEVEEE KKESVKT +SGEVEK SKP                     AAIVNSQTLEEVA
Subjt:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKP---------------------AAIVNSQTLEEVA

SwissProt top hits

e value

%identity

Alignment

P43333 U2 small nuclear ribonucleoprotein A'

2.7e-12

55.91

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Query:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKK---ESVK----TLISGEVEKESKP---------AAIVNSQTLEEVA
        K+ NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK   E VK    T  + E  K   P         AAI+NSQT+EE+A
Subjt:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKK---ESVK----TLISGEVEKESKP---------AAIVNSQTLEEVA

Arabidopsis top hits

e value

%identity

Alignment

AT1G09760.1 U2 small nuclear ribonucleoprotein A

1.9e-13

55.91

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Query:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKK---ESVK----TLISGEVEKESKP---------AAIVNSQTLEEVA
        K+ NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK   E VK    T  + E  K   P         AAI+NSQT+EE+A
Subjt:  KQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKK---ESVK----TLISGEVEKESKP---------AAIVNSQTLEEVA

Sequences

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CDS sequence

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ATGAAGCAGCCAAATTATCGATTGTATGTCATTCACAAGTTGAAGTCAGTCCGCGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAAGAATTTATT
TTCATCTAAGGAAGTTGAAGAAGAGGGAAAGAAGGAATCTGTGAAGACATTAATTTCAGGTGAGGTAGAGAAGGAATCCAAACCTGCGGCCATTGTTAATTCCCAAACCC
TTGAAGAGGTTGCAAGTGGATCTTATAAGGCACCTGCTACTGTTCATGATAGATTTAAACAAAGTAACAAAACATGTCTAGATGACGCTAAAACAGAGGTGGCTCGTTAT
CTGGATGAGGCTCGTATAGATTGTATGGGCGATGAATATTTAGATTTGCTAACTTGGTGGAAGCACATGACAATCGGTAATCTCTTAGATGAGATTACTTAA

mRNA sequence

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Protein sequence

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MKQPNYRLYVIHKLKSVRVLDFKKVRNKERLEAKNLFSSKEVEEEGKKESVKTLISGEVEKESKPAAIVNSQTLEEVASGSYKAPATVHDRFKQSNKTCLDDAKTEVARY
LDEARIDCMGDEYLDLLTWWKHMTIGNLLDEIT

Pay0021977 (gene) of Melon (Payzawat) v1 genome