CuGenDBv2

Gene ID	Pay0022159
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Genome location	chr09:5436549..5454856
RNA-Seq Expression	Pay0022159
Synteny	Pay0022159
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0043565 - sequence-specific DNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily IPR041588 - Integrase zinc-binding domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR036397 - Ribonuclease H superfamily IPR012337 - Ribonuclease H-like superfamily IPR001584 - Integrase, catalytic core

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

1.7e-174

86.14

Show/hide

Query:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
        MQQGKVVAYAS                LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
Subjt:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK

Query:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
        VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDS VKTELLS
Subjt:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS

Query:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT
        +AHSSPFSMHPGSTKMY+D+KRVYWWRNMKREVAEF SRCLVCQ+VKA RQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVD L  +  
Subjt:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT

Query:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
         F+P K T+T  K A+LY+ +IV ++G PVSIVSDRD+RFTSKFW SLQ A+GT+L FSTAFHPQTDG
Subjt:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

5.1e-174

85.87

Show/hide

Query:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
        MQQGKVVAYAS                LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
Subjt:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK

Query:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
        VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFSLSSDGGLLFERRLCVPSDSAVKTELLS
Subjt:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS

Query:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT
        +AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF S+CLVCQ+VKA RQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVD L  +  
Subjt:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT

Query:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
         F+P K T+T  K A+LY+ +IV ++G PVSIVSDRD+RFTSKFW  LQ A+GT+L FSTAFHPQTDG
Subjt:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

KAA0059062.1 pol protein [Cucumis melo var. makuwa]

7.8e-175

86.41

Show/hide

Query:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
        MQQGKVVAYAS                LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
Subjt:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK

Query:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
        VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSA+KTELLS
Subjt:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS

Query:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT
        +AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF SRCLVCQ+VKA RQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVD L  +  
Subjt:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT

Query:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
         F+P K T+T  K A+LY+ +IV ++G PVSIVSDRD+RFTSKFW  LQ A GT+L FSTAFHPQTDG
Subjt:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

KAA0062112.1 pol protein [Cucumis melo var. makuwa]

7.8e-175

86.41

Show/hide

Query:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
        MQQGKVVAYAS                LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
Subjt:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK

Query:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
        VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
Subjt:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS

Query:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT
        +AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF SRCLVCQ+VKA RQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVD L  +  
Subjt:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT

Query:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
         F+P K T+T  K A+LY+ +IV ++G PVSIVSDRD+RFTSKFW  LQ ++GT+L FSTAFHPQTDG
Subjt:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

TYK01613.1 pol protein [Cucumis melo var. makuwa]

5.1e-174

85.87

Show/hide

Query:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
        MQQGKVVAYAS                LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
Subjt:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK

Query:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
        VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFSLSSDGGLLFERRLCVPSDSAVKTELLS
Subjt:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS

Query:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT
        +AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF S+CLVCQ+VKA RQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVD L  +  
Subjt:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT

Query:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
         F+P K T+T  K A+LY+ +IV ++G PVSIVSDRD+RFTSKFW  LQ A+GT+L FSTAFHPQTDG
Subjt:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U330 Reverse transcriptase

8.4e-175

86.14

Show/hide

Query:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
        MQQGKVVAYAS                LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
Subjt:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK

Query:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
        VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDS VKTELLS
Subjt:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS

Query:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT
        +AHSSPFSMHPGSTKMY+D+KRVYWWRNMKREVAEF SRCLVCQ+VKA RQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVD L  +  
Subjt:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT

Query:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
         F+P K T+T  K A+LY+ +IV ++G PVSIVSDRD+RFTSKFW SLQ A+GT+L FSTAFHPQTDG
Subjt:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

A0A5A7U7V9 Reverse transcriptase

2.5e-174

85.87

Show/hide

Query:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
        MQQGKVVAYAS                LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
Subjt:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK

Query:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
        VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFSLSSDGGLLFERRLCVPSDSAVKTELLS
Subjt:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS

Query:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT
        +AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF S+CLVCQ+VKA RQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVD L  +  
Subjt:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT

Query:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
         F+P K T+T  K A+LY+ +IV ++G PVSIVSDRD+RFTSKFW  LQ A+GT+L FSTAFHPQTDG
Subjt:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

A0A5A7UT37 Reverse transcriptase

3.8e-175

86.41

Show/hide

Query:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
        MQQGKVVAYAS                LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
Subjt:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK

Query:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
        VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSA+KTELLS
Subjt:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS

Query:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT
        +AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF SRCLVCQ+VKA RQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVD L  +  
Subjt:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT

Query:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
         F+P K T+T  K A+LY+ +IV ++G PVSIVSDRD+RFTSKFW  LQ A GT+L FSTAFHPQTDG
Subjt:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

A0A5A7V1N3 Reverse transcriptase

3.8e-175

86.41

Show/hide

Query:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
        MQQGKVVAYAS                LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
Subjt:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK

Query:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
        VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
Subjt:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS

Query:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT
        +AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF SRCLVCQ+VKA RQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVD L  +  
Subjt:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT

Query:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
         F+P K T+T  K A+LY+ +IV ++G PVSIVSDRD+RFTSKFW  LQ ++GT+L FSTAFHPQTDG
Subjt:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

A0A5D3BPI1 Reverse transcriptase

2.5e-174

85.87

Show/hide

Query:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
        MQQGKVVAYAS                LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK
Subjt:  MQQGKVVAYAS----------------LAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK

Query:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS
        VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFSLSSDGGLLFERRLCVPSDSAVKTELLS
Subjt:  VSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLS

Query:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT
        +AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF S+CLVCQ+VKA RQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVD L  +  
Subjt:  KAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRT

Query:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
         F+P K T+T  K A+LY+ +IV ++G PVSIVSDRD+RFTSKFW  LQ A+GT+L FSTAFHPQTDG
Subjt:  SFLPVKVTFTLDKLAKLYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

5.3e-41

29.26

Show/hide

Query:  VAYASLAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDL
        V+   + A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D 
Subjt:  VAYASLAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDL

Query:  ERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSKAHSSPFSMHPGSTKM
        E   I          + Q+++    + +++   +ND  L+    L    + VE ++    GLL   +  + +P+D+ +   ++ K H     +HPG   +
Subjt:  ERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSKAHSSPFSMHPGSTKM

Query:  YQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAK
           + R + W+ +++++ E+   C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD   ++    +P   + T ++ A+
Subjt:  YQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAK

Query:  LYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
        ++  ++++ +G P  I++D D  FTS+ W          + FS  + PQTDG
Subjt:  LYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

P0CT35 Transposon Tf2-2 polyprotein

5.3e-41

29.26

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Query:  VAYASLAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDL
        V+   + A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D 
Subjt:  VAYASLAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDL

Query:  ERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSKAHSSPFSMHPGSTKM
        E   I          + Q+++    + +++   +ND  L+    L    + VE ++    GLL   +  + +P+D+ +   ++ K H     +HPG   +
Subjt:  ERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSKAHSSPFSMHPGSTKM

Query:  YQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAK
           + R + W+ +++++ E+   C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD   ++    +P   + T ++ A+
Subjt:  YQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAK

Query:  LYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
        ++  ++++ +G P  I++D D  FTS+ W          + FS  + PQTDG
Subjt:  LYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

P0CT36 Transposon Tf2-3 polyprotein

5.3e-41

29.26

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Query:  VAYASLAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDL
        V+   + A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D 
Subjt:  VAYASLAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDL

Query:  ERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSKAHSSPFSMHPGSTKM
        E   I          + Q+++    + +++   +ND  L+    L    + VE ++    GLL   +  + +P+D+ +   ++ K H     +HPG   +
Subjt:  ERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSKAHSSPFSMHPGSTKM

Query:  YQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAK
           + R + W+ +++++ E+   C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD   ++    +P   + T ++ A+
Subjt:  YQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAK

Query:  LYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
        ++  ++++ +G P  I++D D  FTS+ W          + FS  + PQTDG
Subjt:  LYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

P0CT41 Transposon Tf2-12 polyprotein

5.3e-41

29.26

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Query:  VAYASLAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDL
        V+   + A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D 
Subjt:  VAYASLAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDL

Query:  ERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSKAHSSPFSMHPGSTKM
        E   I          + Q+++    + +++   +ND  L+    L    + VE ++    GLL   +  + +P+D+ +   ++ K H     +HPG   +
Subjt:  ERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSKAHSSPFSMHPGSTKM

Query:  YQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAK
           + R + W+ +++++ E+   C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD   ++    +P   + T ++ A+
Subjt:  YQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAK

Query:  LYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
        ++  ++++ +G P  I++D D  FTS+ W          + FS  + PQTDG
Subjt:  LYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

Q9UR07 Transposon Tf2-11 polyprotein

5.3e-41

29.26

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Query:  VAYASLAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDL
        V+   + A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D 
Subjt:  VAYASLAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDL

Query:  ERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSKAHSSPFSMHPGSTKM
        E   I          + Q+++    + +++   +ND  L+    L    + VE ++    GLL   +  + +P+D+ +   ++ K H     +HPG   +
Subjt:  ERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSKAHSSPFSMHPGSTKM

Query:  YQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAK
           + R + W+ +++++ E+   C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD   ++    +P   + T ++ A+
Subjt:  YQDLKRVYWWRNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAK

Query:  LYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG
        ++  ++++ +G P  I++D D  FTS+ W          + FS  + PQTDG
Subjt:  LYVDKIVSVYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCAGCAGGGTAAGGTGGTCGCTTATGCGTCCTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATATTCACG
GATCATAAGAGCTTGAAATACTTCTTTACTCAGAAAGAATTGAATATGAGACAGCGAAGGTGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCAT
CCAGGCAAGGCGAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCGGCAGCACTTATTACCCGACAGGCCCCATTGCATCGGGATCTCGAGCGGGCT
GAGATTGCAGTGTCAGTGGGGGCAGTTACTATGCAGTTAGCCCAGTTGACAGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTAT
CTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAGCGGTTGAGTTCTCATTATCCTCTGATGGTGGACTTTTGTTCGAGAGACGCCTCTGTGTGCCGTCGGAT
AGTGCGGTTAAGACAGAATTATTATCTAAGGCTCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGG
CGTAACATGAAGAGGGAAGTAGCAGAATTTTTTAGTAGATGTTTGGTGTGTCAGAAGGTTAAGGCATCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGC
ATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGGCTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAACTTACCA
AATCAGCGCACTTCATTTCTACCGGTCAAGGTCACTTTCACTTTGGATAAGCTGGCCAAGTTGTATGTTGATAAAATTGTGAGTGTGTATGGAGCCCCAGTATCT
ATTGTGTCTGATCGAGACTCCAGGTTTACCTCAAAGTTTTGGCCAAGTTTACAACAAGCCTTAGGTACCAAGTTACATTTTAGTACTGCATTTCATCCTCAGACA
GATGGCTAG

mRNA sequence

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Protein sequence

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MQQGKVVAYASLAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERA
EIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWW
RNMKREVAEFFSRCLVCQKVKASRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDNLPNQRTSFLPVKVTFTLDKLAKLYVDKIVSVYGAPVS
IVSDRDSRFTSKFWPSLQQALGTKLHFSTAFHPQTDG

Pay0022159 (gene) of Melon (Payzawat) v1 genome