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Pay0022242 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0022242
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:9054058..9055918
RNA-Seq ExpressionPay0022242
SyntenyPay0022242
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046246.1 Gag protease polyprotein [Cucumis melo var. makuwa]3.2e-1948.48Show/hide
Query:  RIERGQTRSWTPTEPTMDAEAHLIDQDAKR---EREKALESTTFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCKTEKFYTHSFVDAKRKEFLN
        R+ RG T      E  ++     + +   +   ER KAL + T EGT NPADV+R +NLVEKCF VMERLEDKKVKLACCKT                + 
Subjt:  RIERGQTRSWTPTEPTMDAEAHLIDQDAKR---EREKALESTTFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCKTEKFYTHSFVDAKRKEFLN

Query:  LKQGNMTIAEYERKFTELAKYVISLIMDKEDK
          + +M IAEYE+KF EL KY IS IMD+EDK
Subjt:  LKQGNMTIAEYERKFTELAKYVISLIMDKEDK

KAA0046981.1 Pyridoxal-phosphate-dependent serine hydroxymethyltransferase [Cucumis melo var. makuwa]3.2e-1942.39Show/hide
Query:  RIERGQTRSWTPTEPTMDAEAHLIDQDAKREREKALESTTFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCKTEKFYTHSFVDAKRKEFLNLKQ
        RIE GQTRS T TE TMD EAH I+Q                                                              DAKRKEFLNL Q
Subjt:  RIERGQTRSWTPTEPTMDAEAHLIDQDAKREREKALESTTFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCKTEKFYTHSFVDAKRKEFLNLKQ

Query:  GNMTIAEYERKFTELAKYVISLIMDKEDK------QVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQAKSGFSQGLH
        G+MTIAEYE+KF ELAKY +  IMD+++K      + A+RV NT   EG++S  KR SA++SK KG+D GFSKQAK GFSQ  H
Subjt:  GNMTIAEYERKFTELAKYVISLIMDKEDK------QVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQAKSGFSQGLH

KAA0060285.1 aldehyde dehydrogenase family 3 member F1 [Cucumis melo var. makuwa]1.6e-2352.8Show/hide
Query:  TFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCK-------------------------------TEKFYTHSFVDAKRKEFLNLKQGNMTIAEY
        TFEGTT P++ +RW+NLVEKCFGV+E  +++KVKLA                                   EKFY H FVD KRKEFLNLKQGNMTIAEY
Subjt:  TFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCK-------------------------------TEKFYTHSFVDAKRKEFLNLKQGNMTIAEY

Query:  ERKFTELAKYVISLIMDKEDKQVAM
        E KF EL KYVIS IMD+EDK + +
Subjt:  ERKFTELAKYVISLIMDKEDKQVAM

KAA0063433.1 uncharacterized protein E6C27_scaffold977G00040 [Cucumis melo var. makuwa]9.8e-3795.51Show/hide
Query:  EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFTELAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQ
        EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFT+LAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGF+++
Subjt:  EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFTELAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQ

TYJ95795.1 uncharacterized protein E5676_scaffold110G00710 [Cucumis melo var. makuwa]9.8e-3795.51Show/hide
Query:  EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFTELAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQ
        EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFT+LAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGF+++
Subjt:  EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFTELAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQ

TrEMBL top hitse value%identityAlignment
A0A5A7TVT1 Gag protease polyprotein1.5e-1948.48Show/hide
Query:  RIERGQTRSWTPTEPTMDAEAHLIDQDAKR---EREKALESTTFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCKTEKFYTHSFVDAKRKEFLN
        R+ RG T      E  ++     + +   +   ER KAL + T EGT NPADV+R +NLVEKCF VMERLEDKKVKLACCKT                + 
Subjt:  RIERGQTRSWTPTEPTMDAEAHLIDQDAKR---EREKALESTTFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCKTEKFYTHSFVDAKRKEFLN

Query:  LKQGNMTIAEYERKFTELAKYVISLIMDKEDK
          + +M IAEYE+KF EL KY IS IMD+EDK
Subjt:  LKQGNMTIAEYERKFTELAKYVISLIMDKEDK

A0A5A7V337 Aldehyde dehydrogenase family 3 member F17.9e-2452.8Show/hide
Query:  TFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCK-------------------------------TEKFYTHSFVDAKRKEFLNLKQGNMTIAEY
        TFEGTT P++ +RW+NLVEKCFGV+E  +++KVKLA                                   EKFY H FVD KRKEFLNLKQGNMTIAEY
Subjt:  TFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCK-------------------------------TEKFYTHSFVDAKRKEFLNLKQGNMTIAEY

Query:  ERKFTELAKYVISLIMDKEDKQVAM
        E KF EL KYVIS IMD+EDK + +
Subjt:  ERKFTELAKYVISLIMDKEDKQVAM

A0A5A7V5R3 Retrotrans_gag domain-containing protein4.8e-3795.51Show/hide
Query:  EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFTELAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQ
        EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFT+LAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGF+++
Subjt:  EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFTELAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQ

A0A5D3BBC8 Retrotrans_gag domain-containing protein4.8e-3795.51Show/hide
Query:  EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFTELAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQ
        EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFT+LAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGF+++
Subjt:  EKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFTELAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQ

A0A5D3C0M5 Pyridoxal-phosphate-dependent serine hydroxymethyltransferase1.5e-1942.39Show/hide
Query:  RIERGQTRSWTPTEPTMDAEAHLIDQDAKREREKALESTTFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCKTEKFYTHSFVDAKRKEFLNLKQ
        RIE GQTRS T TE TMD EAH I+Q                                                              DAKRKEFLNL Q
Subjt:  RIERGQTRSWTPTEPTMDAEAHLIDQDAKREREKALESTTFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCKTEKFYTHSFVDAKRKEFLNLKQ

Query:  GNMTIAEYERKFTELAKYVISLIMDKEDK------QVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQAKSGFSQGLH
        G+MTIAEYE+KF ELAKY +  IMD+++K      + A+RV NT   EG++S  KR SA++SK KG+D GFSKQAK GFSQ  H
Subjt:  GNMTIAEYERKFTELAKYVISLIMDKEDK------QVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQAKSGFSQGLH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCGTACTTGGAAAAGTTGGAACAAGATGGCTTGAGTTTGATTCGCATGAAGGAAGAAGGATATGTCGTGCCGAGGATAGAAAGAGGACAAACTAGATCGTGGAC
TCCTACCGAGCCCACTATGGACGCAGAGGCTCACTTGATCGATCAAGATGCGAAGAGGGAAAGAGAAAAGGCATTGGAATCTACGACCTTCGAAGGAACCACGAATCCAG
CTGACGTAAAGAGGTGGTTGAACTTGGTTGAGAAATGTTTTGGAGTAATGGAGCGCCTCGAAGACAAAAAAGTAAAGCTGGCATGTTGCAAGACGGAAAAGTTCTACACT
CATTCATTTGTCGATGCAAAGAGAAAGGAATTCTTGAATTTAAAGCAAGGCAATATGACTATCGCAGAGTATGAAAGGAAGTTCACAGAGCTCGCGAAGTACGTGATATC
CCTTATAATGGATAAGGAGGATAAACAGGTGGCTATGCGTGTTGTGAATACACAAGTTGGAGAAGGAAAGAATTCAAAAGAGAAGAGGCCAAGCGCGGAAATGAGTAAAG
AAAAGGGAAATGATGAAGGATTTAGTAAGCAAGCTAAATCTGGGTTTAGTCAAGGATTGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCGTACTTGGAAAAGTTGGAACAAGATGGCTTGAGTTTGATTCGCATGAAGGAAGAAGGATATGTCGTGCCGAGGATAGAAAGAGGACAAACTAGATCGTGGAC
TCCTACCGAGCCCACTATGGACGCAGAGGCTCACTTGATCGATCAAGATGCGAAGAGGGAAAGAGAAAAGGCATTGGAATCTACGACCTTCGAAGGAACCACGAATCCAG
CTGACGTAAAGAGGTGGTTGAACTTGGTTGAGAAATGTTTTGGAGTAATGGAGCGCCTCGAAGACAAAAAAGTAAAGCTGGCATGTTGCAAGACGGAAAAGTTCTACACT
CATTCATTTGTCGATGCAAAGAGAAAGGAATTCTTGAATTTAAAGCAAGGCAATATGACTATCGCAGAGTATGAAAGGAAGTTCACAGAGCTCGCGAAGTACGTGATATC
CCTTATAATGGATAAGGAGGATAAACAGGTGGCTATGCGTGTTGTGAATACACAAGTTGGAGAAGGAAAGAATTCAAAAGAGAAGAGGCCAAGCGCGGAAATGAGTAAAG
AAAAGGGAAATGATGAAGGATTTAGTAAGCAAGCTAAATCTGGGTTTAGTCAAGGATTGCATTAG
Protein sequenceShow/hide protein sequence
MEPYLEKLEQDGLSLIRMKEEGYVVPRIERGQTRSWTPTEPTMDAEAHLIDQDAKREREKALESTTFEGTTNPADVKRWLNLVEKCFGVMERLEDKKVKLACCKTEKFYT
HSFVDAKRKEFLNLKQGNMTIAEYERKFTELAKYVISLIMDKEDKQVAMRVVNTQVGEGKNSKEKRPSAEMSKEKGNDEGFSKQAKSGFSQGLH