CuGenDBv2

Gene ID	Pay0022277
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Genome location	chr06:20268936..20269759
RNA-Seq Expression	Pay0022277
Synteny	Pay0022277
Gene Ontology terms	GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0000502 - proteasome complex (cellular component) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005524 - ATP binding (molecular function) GO:0008194 - UDP-glycosyltransferase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0036402 - proteasome-activating ATPase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025242.1 pol protein [Cucumis melo var. makuwa]

3.8e-126

93.21

Show/hide

Query:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ
        MPPRRG RRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQA+AAP QAQAAPVQAQAVAPPAPEEAQ
Subjt:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ

Query:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS
        PVPVQLSAEAKHLRD RKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA              KITWEQFKENFYAKFFS
Subjt:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS

Query:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
        ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
Subjt:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR

KAA0025848.1 pol protein [Cucumis melo var. makuwa]

1.1e-125

92.83

Show/hide

Query:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ
        MPPRRG RRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQA+AAP QAQAAPVQAQAVAPPAPEEAQ
Subjt:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ

Query:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS
        PVPVQLS EAKHLRD RKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA              KITWEQFKENFYAKFFS
Subjt:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS

Query:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
        ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
Subjt:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR

KAA0033825.1 pol protein [Cucumis melo var. makuwa]

1.1e-125

92.83

Show/hide

Query:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ
        MPPRRG RRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQA+AAP QAQAAPVQAQAVAPPAPEEAQ
Subjt:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ

Query:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS
        PVPVQLS EAKHLRD RKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA              KITWEQFKENFYAKFFS
Subjt:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS

Query:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
        ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
Subjt:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR

TYJ95850.1 pol protein [Cucumis melo var. makuwa]

3.8e-126

93.21

Show/hide

Query:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ
        MPPRRG RRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQA+AAP QAQAAPVQAQAVAPPAPEEAQ
Subjt:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ

Query:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS
        PVPVQLSAEAKHLRD RKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA              KITWEQFKENFYAKFFS
Subjt:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS

Query:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
        ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
Subjt:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR

TYK20443.1 pol protein [Cucumis melo var. makuwa]

1.1e-125

92.83

Show/hide

Query:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ
        MPPRRG RRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQA+AAP QAQAAPVQAQAVAPPAPEEAQ
Subjt:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ

Query:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS
        PVPVQLS EAKHLRD RKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA              KITWEQFKENFYAKFFS
Subjt:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS

Query:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
        ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
Subjt:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TEQ2 Reverse transcriptase

5.4e-126

92.83

Show/hide

Query:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ
        MPPRRG RRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQA+AAP QAQAAPVQAQAVAPPAPEEAQ
Subjt:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ

Query:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS
        PVPVQLS EAKHLRD RKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA              KITWEQFKENFYAKFFS
Subjt:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS

Query:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
        ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
Subjt:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR

A0A5A7TSL0 Reverse transcriptase

1.8e-126

93.21

Show/hide

Query:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ
        MPPRRG RRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQA+AAP QAQAAPVQAQAVAPPAPEEAQ
Subjt:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ

Query:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS
        PVPVQLSAEAKHLRD RKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA              KITWEQFKENFYAKFFS
Subjt:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS

Query:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
        ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
Subjt:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR

A0A5A7UBS1 Reverse transcriptase

5.4e-126

92.83

Show/hide

Query:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ
        MPPRRG RRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQA+AAP QAQAAPVQAQAVAPPAPEEAQ
Subjt:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ

Query:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS
        PVPVQLS EAKHLRD RKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA              KITWEQFKENFYAKFFS
Subjt:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS

Query:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
        ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
Subjt:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR

A0A5D3CQB5 Reverse transcriptase

1.8e-126

93.21

Show/hide

Query:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ
        MPPRRG RRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQA+AAP QAQAAPVQAQAVAPPAPEEAQ
Subjt:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ

Query:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS
        PVPVQLSAEAKHLRD RKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA              KITWEQFKENFYAKFFS
Subjt:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS

Query:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
        ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
Subjt:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR

A0A5D3DY07 Reverse transcriptase

5.4e-126

92.83

Show/hide

Query:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ
        MPPRRG RRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQA+AAP QAQAAPVQAQAVAPPAPEEAQ
Subjt:  MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQ

Query:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS
        PVPVQLS EAKHLRD RKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA              KITWEQFKENFYAKFFS
Subjt:  PVPVQLSAEAKHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTA-------------CKITWEQFKENFYAKFFS

Query:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
        ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR
Subjt:  ANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCGCCACGTAGGGGTGCACGCCGAGGAGGTGGTAGGGGAGGCAGAGGAGCCGGTCGTGGCCAGCCGGAGGCGCCACCTGTTGCACCGGCAGTCGACCCAAACGCACC
GGTCACCCAGGCGGATCTCGCCGCGATGGAGCAGCGTTATCAGGACATGCTGCAAGCTGCTTTGGCGCCTTTCCTTGCCGCCCAGCAGAACCAGGCCGCCCCTGTTCAGG
CCCAGGCCGCCCCTGTTCAGGCCCAGGCCGCCCCTGTTCAGGCTCAGGCCGTCGCTCCTCCAGCCCCTGAGGAAGCTCAACCAGTACCAGTTCAACTGTCGGCCGAGGCG
AAACACTTACGGGATTTAAGGAAGTATAATCCCAAGACCTTTGACGGATCCATGGACAACCCCACAAAGGCCCAAATGTGGTTGACGTCCATAGAGACTATTTTCCGGTA
CATGAAGTGCCCAGAAGACCAGAAGGTGCAGTGTGCAGTCTTCTTCTTGGAGGACAGGGGCACCGCCTGCAAAATAACTTGGGAGCAGTTCAAGGAGAACTTCTATGCTA
AGTTCTTCTCTGCCAATGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGAGCAAGGCGACATGACGGTGGAGCAGTACGACGCCGAGTTCGATATGCTGTCCCGC
TTTGCTCCCGATATGGTAAGGGATGAGGCTGCCAGGACGGAGAAATTCGTTAGAGGACTCAGGCTAGACCTTCAGGGCATTGTCAGAGCCCTCCGCCAGCCACGCATGCT
GATGCACTACGTATAG

mRNA sequence

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Protein sequence

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MPPRRGARRGGGRGGRGAGRGQPEAPPVAPAVDPNAPVTQADLAAMEQRYQDMLQAALAPFLAAQQNQAAPVQAQAAPVQAQAAPVQAQAVAPPAPEEAQPVPVQLSAEA
KHLRDLRKYNPKTFDGSMDNPTKAQMWLTSIETIFRYMKCPEDQKVQCAVFFLEDRGTACKITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSR
FAPDMVRDEAARTEKFVRGLRLDLQGIVRALRQPRMLMHYV

Pay0022277 (gene) of Melon (Payzawat) v1 genome