; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0022468 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0022468
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr02:9501227..9502126
RNA-Seq ExpressionPay0022468
SyntenyPay0022468
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036824.1 uncharacterized protein E6C27_scaffold20G001240 [Cucumis melo var. makuwa]6.4e-10869.13Show/hide
Query:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
        MSIMD I RAGL KTISNVGPFYPQLIREFI+NLP++FN+ SSL YQ +HIRGF+FVIS  VINGFL N ID+DYS S P T+VLA VLSGGTLSTWPVN
Subjt:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN

Query:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
         IP             IGIANWFPSSHA S+S ALG FLY+ICND+K++TGAFIYNQL+RHV SFGVK+PIALPR FS+LLLHLNGAVLIAAD PGP+PK
Subjt:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK

Query:  TLSLSYRLFQGSHVSDIDHD---------------DESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRRESTT
        T++ SY+LFQGSHVSDI+HD               DES +GF VD EL A IVN+L A+SRALTN INLLSE+RLE+DALI+HLK+  PST+R++S++
Subjt:  TLSLSYRLFQGSHVSDIDHD---------------DESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRRESTT

KAA0038199.1 uncharacterized protein E6C27_scaffold270G00330 [Cucumis melo var. makuwa]6.1e-11194.55Show/hide
Query:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
        MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
Subjt:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN

Query:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
        RIPA            IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
Subjt:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK

Query:  TLSLSYRLFQGSHVSDIDHD
        TLSLSYRLFQGSHVSDIDHD
Subjt:  TLSLSYRLFQGSHVSDIDHD

KAA0041594.1 uncharacterized protein E6C27_scaffold93G00610 [Cucumis melo var. makuwa]4.1e-10770.07Show/hide
Query:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
        MSIMD I +AGL KTISNVGPFYPQLIREFI+NLP++FN+ SS DYQTVHIRGFKFVISP  INGFL N ID+D S S P T+VLA+VLSGGTLSTWP+N
Subjt:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN

Query:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
         IPA            IGIANWFPSSHASS+S ALG FLY+ICND+K++TGAFIYNQLLRHV SFGVK+PIAL RLF +LLLHLNGAVL A+DTP P+PK
Subjt:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK

Query:  TLSLSYRLFQGSHVSDIDHD---------------DESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRR
        T++LSYRLFQG H+ DID D               DESAEGF+VDREL  CI+N+L A+S ALTN I LLSE+RLE+DALIRHLK+  PSTSR+
Subjt:  TLSLSYRLFQGSHVSDIDHD---------------DESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRR

TYK14798.1 uncharacterized protein E5676_scaffold1610G00420 [Cucumis melo var. makuwa]3.1e-11094.09Show/hide
Query:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
        MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
Subjt:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN

Query:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
        RIPA            IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLR+VDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
Subjt:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK

Query:  TLSLSYRLFQGSHVSDIDHD
        TLSLSYRLFQGSHVSDIDHD
Subjt:  TLSLSYRLFQGSHVSDIDHD

XP_008457126.1 PREDICTED: uncharacterized protein LOC103496872 [Cucumis melo]1.0e-11380.85Show/hide
Query:  MDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVNRIP
        MD IERAGL KTISNVGPFYPQLIREFI+N PNDFND SS DYQTVHIRGFKFVIS  VINGFL NVIDV  SPSSPST+VLASVLSGGTLSTWPVN IP
Subjt:  MDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVNRIP

Query:  A------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPKTLS
        A            IGIANWFPSS ASSVSAALG FLYRICNDNK+NTGAFIYNQLLRHV SFGVK  IALPRLFSNLLLHLNGAVL AADT GPDPKTL+
Subjt:  A------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPKTLS

Query:  LSYRLFQGSHVSDID-HDDESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRRESTTD
        LSYRLFQ SHV DID         FFVDREL A IVNAL  +SRALT  INLLSE+RLEIDALIRHLKTF PSTSRRESTTD
Subjt:  LSYRLFQGSHVSDID-HDDESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRRESTTD

TrEMBL top hitse value%identityAlignment
A0A1S3C633 uncharacterized protein LOC1034968724.9e-11480.85Show/hide
Query:  MDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVNRIP
        MD IERAGL KTISNVGPFYPQLIREFI+N PNDFND SS DYQTVHIRGFKFVIS  VINGFL NVIDV  SPSSPST+VLASVLSGGTLSTWPVN IP
Subjt:  MDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVNRIP

Query:  A------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPKTLS
        A            IGIANWFPSS ASSVSAALG FLYRICNDNK+NTGAFIYNQLLRHV SFGVK  IALPRLFSNLLLHLNGAVL AADT GPDPKTL+
Subjt:  A------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPKTLS

Query:  LSYRLFQGSHVSDID-HDDESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRRESTTD
        LSYRLFQ SHV DID         FFVDREL A IVNAL  +SRALT  INLLSE+RLEIDALIRHLKTF PSTSRRESTTD
Subjt:  LSYRLFQGSHVSDID-HDDESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRRESTTD

A0A5A7SZY3 Reverse transcriptase Ty1/copia-type domain-containing protein3.1e-10869.13Show/hide
Query:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
        MSIMD I RAGL KTISNVGPFYPQLIREFI+NLP++FN+ SSL YQ +HIRGF+FVIS  VINGFL N ID+DYS S P T+VLA VLSGGTLSTWPVN
Subjt:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN

Query:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
         IP             IGIANWFPSSHA S+S ALG FLY+ICND+K++TGAFIYNQL+RHV SFGVK+PIALPR FS+LLLHLNGAVLIAAD PGP+PK
Subjt:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK

Query:  TLSLSYRLFQGSHVSDIDHD---------------DESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRRESTT
        T++ SY+LFQGSHVSDI+HD               DES +GF VD EL A IVN+L A+SRALTN INLLSE+RLE+DALI+HLK+  PST+R++S++
Subjt:  TLSLSYRLFQGSHVSDIDHD---------------DESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRRESTT

A0A5A7TA16 Uncharacterized protein3.0e-11194.55Show/hide
Query:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
        MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
Subjt:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN

Query:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
        RIPA            IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
Subjt:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK

Query:  TLSLSYRLFQGSHVSDIDHD
        TLSLSYRLFQGSHVSDIDHD
Subjt:  TLSLSYRLFQGSHVSDIDHD

A0A5A7TDT9 Uncharacterized protein2.0e-10770.07Show/hide
Query:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
        MSIMD I +AGL KTISNVGPFYPQLIREFI+NLP++FN+ SS DYQTVHIRGFKFVISP  INGFL N ID+D S S P T+VLA+VLSGGTLSTWP+N
Subjt:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN

Query:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
         IPA            IGIANWFPSSHASS+S ALG FLY+ICND+K++TGAFIYNQLLRHV SFGVK+PIAL RLF +LLLHLNGAVL A+DTP P+PK
Subjt:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK

Query:  TLSLSYRLFQGSHVSDIDHD---------------DESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRR
        T++LSYRLFQG H+ DID D               DESAEGF+VDREL  CI+N+L A+S ALTN I LLSE+RLE+DALIRHLK+  PSTSR+
Subjt:  TLSLSYRLFQGSHVSDIDHD---------------DESAEGFFVDRELVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRR

A0A5D3CUA7 Uncharacterized protein1.5e-11094.09Show/hide
Query:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
        MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN
Subjt:  MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVN

Query:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
        RIPA            IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLR+VDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK
Subjt:  RIPA------------IGIANWFPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPK

Query:  TLSLSYRLFQGSHVSDIDHD
        TLSLSYRLFQGSHVSDIDHD
Subjt:  TLSLSYRLFQGSHVSDIDHD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATTATGGACTTTATTGAAAGGGCTGGTTTAATAAAAACTATTTCGAATGTCGGTCCATTTTATCCTCAGCTTATTAGGGAGTTTATAATTAATTTGCCTAATGA
TTTTAATGATCAAAGTAGCCTAGATTATCAGACGGTTCATATTCGGGGGTTCAAATTTGTGATTTCTCCTATTGTGATTAACGGGTTTTTAGAGAATGTTATTGATGTTG
ACTATTCTCCGTCATCTCCTTCCACTGATGTTCTGGCTTCTGTCTTATCTGGTGGGACGTTGTCCACTTGGCCTGTAAATAGAATTCCTGCAATTGGCATTGCTAATTGG
TTCCCTTCCTCTCATGCCTCTAGTGTATCTGCTGCCTTAGGAATATTTCTGTATCGAATCTGCAACGATAATAAGCTGAATACGGGTGCATTCATTTACAATCAGCTGTT
ACGACATGTTGATTCATTTGGGGTTAAGATTCCCATTGCTCTTCCTCGACTCTTCTCAAATCTGTTACTACACCTTAATGGAGCTGTGCTCATTGCAGCTGATACTCCTG
GACCTGACCCTAAAACTTTATCCCTTAGCTACAGACTCTTTCAGGGTAGTCATGTGTCTGATATTGATCATGATGATGAGTCTGCTGAAGGTTTCTTTGTTGATCGTGAG
TTAGTTGCCTGCATTGTTAATGCTCTGATTGCTAAATCTCGTGCTTTAACTAACTTCATCAATCTGTTGTCTGAACAACGGTTGGAAATTGATGCTCTCATTCGACACTT
GAAGACCTTTACTCCATCTACTAGTCGTAGAGAATCAACTACTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATTATGGACTTTATTGAAAGGGCTGGTTTAATAAAAACTATTTCGAATGTCGGTCCATTTTATCCTCAGCTTATTAGGGAGTTTATAATTAATTTGCCTAATGA
TTTTAATGATCAAAGTAGCCTAGATTATCAGACGGTTCATATTCGGGGGTTCAAATTTGTGATTTCTCCTATTGTGATTAACGGGTTTTTAGAGAATGTTATTGATGTTG
ACTATTCTCCGTCATCTCCTTCCACTGATGTTCTGGCTTCTGTCTTATCTGGTGGGACGTTGTCCACTTGGCCTGTAAATAGAATTCCTGCAATTGGCATTGCTAATTGG
TTCCCTTCCTCTCATGCCTCTAGTGTATCTGCTGCCTTAGGAATATTTCTGTATCGAATCTGCAACGATAATAAGCTGAATACGGGTGCATTCATTTACAATCAGCTGTT
ACGACATGTTGATTCATTTGGGGTTAAGATTCCCATTGCTCTTCCTCGACTCTTCTCAAATCTGTTACTACACCTTAATGGAGCTGTGCTCATTGCAGCTGATACTCCTG
GACCTGACCCTAAAACTTTATCCCTTAGCTACAGACTCTTTCAGGGTAGTCATGTGTCTGATATTGATCATGATGATGAGTCTGCTGAAGGTTTCTTTGTTGATCGTGAG
TTAGTTGCCTGCATTGTTAATGCTCTGATTGCTAAATCTCGTGCTTTAACTAACTTCATCAATCTGTTGTCTGAACAACGGTTGGAAATTGATGCTCTCATTCGACACTT
GAAGACCTTTACTCCATCTACTAGTCGTAGAGAATCAACTACTGATTGA
Protein sequenceShow/hide protein sequence
MSIMDFIERAGLIKTISNVGPFYPQLIREFIINLPNDFNDQSSLDYQTVHIRGFKFVISPIVINGFLENVIDVDYSPSSPSTDVLASVLSGGTLSTWPVNRIPAIGIANW
FPSSHASSVSAALGIFLYRICNDNKLNTGAFIYNQLLRHVDSFGVKIPIALPRLFSNLLLHLNGAVLIAADTPGPDPKTLSLSYRLFQGSHVSDIDHDDESAEGFFVDRE
LVACIVNALIAKSRALTNFINLLSEQRLEIDALIRHLKTFTPSTSRRESTTD