; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0022827 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0022827
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:23861477..23862473
RNA-Seq ExpressionPay0022827
SyntenyPay0022827
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035714.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.9e-11476.92Show/hide
Query:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------
        MYKHIYFVIATSAP+SLYSHATSIIKFN LNF DWCEQIRFHLGVLDLDLALLSEKPAAIT ASSDED+SFYKAW+RSNRLSLMF+              
Subjt:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------

Query:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL
                                      TLTNIKFDGSRTIHEHILEMTNLAARLKTM MEVNENFLVTFILN LPSEY PFHMNYN LKDKWNVHEL
Subjt:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL

Query:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
        QSMLIQEEARLKKP+IHS NLMGHK AGKK  KKNG  NHGQLKVKQSS+PI KKGQIKDKC FCNKPGHY+KDCLKRKAWFENKG
Subjt:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
KAA0035949.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.9e-11477.27Show/hide
Query:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------
        MYKHIYFVIA SAPVSLYSHATSIIKFN LNFSDWCEQIRFHLGVLDLDLA LSEKPAAITSASSD+DRSFYKAWERSNRLSLMF+              
Subjt:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------

Query:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL
                                      TLTNIKFDGSRTIHEHILEMTNLAARLKTM MEVNENFLV FILN LPSEYGPFHMNYN LKDKWNVHEL
Subjt:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL

Query:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
        QSMLIQEEARLKKP+IHS NLM HK  GKK  KKNG  NHGQLKVKQSSAPI KKGQIKDKC FCNKPGHY+KDCLKRKAWFENKG
Subjt:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
KAA0046843.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.8e-11577.62Show/hide
Query:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------
        MYKHIYFVIATSAPVSLYSHATSIIKFN LNFSDWCEQIRFHLG LDLDLALLSEKP AITSASSDEDRSFYKAW+RSNRLSLMF+              
Subjt:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------

Query:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL
                                      TLTNIKFDGSRTIHEHILE+TNLAARLKTM MEVNENFLVTFILN LPSEYGPFHMNYN LKDKWNVHEL
Subjt:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL

Query:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
        QSMLIQEEARLKKP+IHS NLMGHK A KK  KKNG  NHGQLKVKQSSAPI KKGQIKDKC FCNKPGHY+KDCLKRKAWFENKG
Subjt:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
KAA0052755.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.9e-11678.6Show/hide
Query:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------
        MYKHIYFVIA SAPVSLYSHATSIIKFN LNFSDWCEQIRFHLGVLDLDLALLSEKP AITSA+SDEDRSFYKAWERSNRLSLMFI              
Subjt:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------

Query:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL
                                      TLTNIKFDGSRTIHEHILEMTNLAARLKTM MEVNENFLV FILN LPSEYGPFHMNYN LKDKWNVHEL
Subjt:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL

Query:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENK
        QSMLIQEEARLKKP+IHSVNLMGHK AGKK  KKNG  NHGQLKVKQSSAPI KKGQIKDKC FCNKPGHY+KDCLKRKAWFENK
Subjt:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENK
TYK04201.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.6e-11678.6Show/hide
Query:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------
        MYKHIYFVIA SAPVSLYSHATSIIKFN LNFSDWCEQIRFHLGVLDLDLALLSEKP AITSA+SDEDRSFYKAWERSNRLSLMFI              
Subjt:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------

Query:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL
                                      TLTNIKFDGSRTIHEHILEMTNLAARLKTM MEVNENFLVTFILN LPSEYGPFHMNYN LKDKWNVHEL
Subjt:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL

Query:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENK
        QSMLIQEEARLKKP+IHSVNLMGHK AGKK  KKNG  NHGQLKVKQSSAPI KKG+IKDKC FCNKPGHY+KDCLKRKAWFENK
Subjt:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENK
TrEMBL top hitse value%identityAlignment
A0A5A7T3G8 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-11577.27Show/hide
Query:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------
        MYKHIYFVIA SAPVSLYSHATSIIKFN LNFSDWCEQIRFHLGVLDLDLA LSEKPAAITSASSD+DRSFYKAWERSNRLSLMF+              
Subjt:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------

Query:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL
                                      TLTNIKFDGSRTIHEHILEMTNLAARLKTM MEVNENFLV FILN LPSEYGPFHMNYN LKDKWNVHEL
Subjt:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL

Query:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
        QSMLIQEEARLKKP+IHS NLM HK  GKK  KKNG  NHGQLKVKQSSAPI KKGQIKDKC FCNKPGHY+KDCLKRKAWFENKG
Subjt:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
A0A5A7TTF5 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-11577.62Show/hide
Query:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------
        MYKHIYFVIATSAPVSLYSHATSIIKFN LNFSDWCEQIRFHLG LDLDLALLSEKP AITSASSDEDRSFYKAW+RSNRLSLMF+              
Subjt:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------

Query:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL
                                      TLTNIKFDGSRTIHEHILE+TNLAARLKTM MEVNENFLVTFILN LPSEYGPFHMNYN LKDKWNVHEL
Subjt:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL

Query:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
        QSMLIQEEARLKKP+IHS NLMGHK A KK  KKNG  NHGQLKVKQSSAPI KKGQIKDKC FCNKPGHY+KDCLKRKAWFENKG
Subjt:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
A0A5A7UG95 Retrovirus-related Pol polyprotein from transposon TNT 1-942.8e-11678.6Show/hide
Query:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------
        MYKHIYFVIA SAPVSLYSHATSIIKFN LNFSDWCEQIRFHLGVLDLDLALLSEKP AITSA+SDEDRSFYKAWERSNRLSLMFI              
Subjt:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------

Query:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL
                                      TLTNIKFDGSRTIHEHILEMTNLAARLKTM MEVNENFLV FILN LPSEYGPFHMNYN LKDKWNVHEL
Subjt:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL

Query:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENK
        QSMLIQEEARLKKP+IHSVNLMGHK AGKK  KKNG  NHGQLKVKQSSAPI KKGQIKDKC FCNKPGHY+KDCLKRKAWFENK
Subjt:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENK
A0A5D3BWW5 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-11678.6Show/hide
Query:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------
        MYKHIYFVIA SAPVSLYSHATSIIKFN LNFSDWCEQIRFHLGVLDLDLALLSEKP AITSA+SDEDRSFYKAWERSNRLSLMFI              
Subjt:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------

Query:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL
                                      TLTNIKFDGSRTIHEHILEMTNLAARLKTM MEVNENFLVTFILN LPSEYGPFHMNYN LKDKWNVHEL
Subjt:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL

Query:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENK
        QSMLIQEEARLKKP+IHSVNLMGHK AGKK  KKNG  NHGQLKVKQSSAPI KKG+IKDKC FCNKPGHY+KDCLKRKAWFENK
Subjt:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENK
A0A5D3E3Y6 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-11576.92Show/hide
Query:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------
        MYKHIYFVIATSAP+SLYSHATSIIKFN LNF DWCEQIRFHLGVLDLDLALLSEKPAAIT ASSDED+SFYKAW+RSNRLSLMF+              
Subjt:  MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFI--------------

Query:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL
                                      TLTNIKFDGSRTIHEHILEMTNLAARLKTM MEVNENFLVTFILN LPSEY PFHMNYN LKDKWNVHEL
Subjt:  ------------------------------TLTNIKFDGSRTIHEHILEMTNLAARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHEL

Query:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
        QSMLIQEEARLKKP+IHS NLMGHK AGKK  KKNG  NHGQLKVKQSS+PI KKGQIKDKC FCNKPGHY+KDCLKRKAWFENKG
Subjt:  QSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHFCNKPGHYKKDCLKRKAWFENKG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G53670.1 unknown protein2.0e-0536.99Show/hide
Query:  SLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFITL
        S  S+  SI   +  NFS+W E +   L ++DLDL+L++E+P      SS ++    K W+RSNR+S+M + +
Subjt:  SLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFITL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAAGCATATTTATTTTGTAATTGCAACATCTGCTCCTGTTTCTCTTTATTCACATGCTACATCTATAATAAAGTTTAATGAACTCAATTTCTCTGATTGGTGCGA
ACAAATCCGATTCCATCTTGGAGTTTTGGATCTTGATTTAGCACTTTTAAGTGAGAAACCTGCTGCAATTACTTCTGCTAGCAGTGATGAGGATAGATCTTTCTATAAAG
CTTGGGAAAGATCAAATAGATTGAGCTTAATGTTTATTACTTTAACCAACATCAAGTTTGATGGTTCTCGTACTATACATGAGCATATCCTTGAAATGACGAACTTGGCA
GCAAGGTTAAAGACCATGAAAATGGAAGTTAATGAGAATTTTTTGGTAACGTTTATCCTCAATTTCTTACCTTCAGAGTATGGTCCATTTCACATGAACTATAACATTCT
GAAAGATAAATGGAATGTGCATGAATTACAAAGTATGCTCATTCAAGAGGAAGCGAGGCTTAAGAAACCAATGATTCACTCTGTCAATCTCATGGGTCACAAAAGAGCTG
GAAAGAAACATGAAAAAAAGAATGGCAATGACAATCATGGACAATTAAAGGTAAAACAGTCATCTGCCCCAATCCGCAAAAAGGGACAAATTAAGGATAAGTGTCATTTT
TGCAACAAACCAGGACACTATAAAAAAGATTGTCTAAAACGTAAGGCATGGTTCGAGAATAAAGGGATTCCTTACGACCCGAACCACAAACCCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTATAAGCATATTTATTTTGTAATTGCAACATCTGCTCCTGTTTCTCTTTATTCACATGCTACATCTATAATAAAGTTTAATGAACTCAATTTCTCTGATTGGTGCGA
ACAAATCCGATTCCATCTTGGAGTTTTGGATCTTGATTTAGCACTTTTAAGTGAGAAACCTGCTGCAATTACTTCTGCTAGCAGTGATGAGGATAGATCTTTCTATAAAG
CTTGGGAAAGATCAAATAGATTGAGCTTAATGTTTATTACTTTAACCAACATCAAGTTTGATGGTTCTCGTACTATACATGAGCATATCCTTGAAATGACGAACTTGGCA
GCAAGGTTAAAGACCATGAAAATGGAAGTTAATGAGAATTTTTTGGTAACGTTTATCCTCAATTTCTTACCTTCAGAGTATGGTCCATTTCACATGAACTATAACATTCT
GAAAGATAAATGGAATGTGCATGAATTACAAAGTATGCTCATTCAAGAGGAAGCGAGGCTTAAGAAACCAATGATTCACTCTGTCAATCTCATGGGTCACAAAAGAGCTG
GAAAGAAACATGAAAAAAAGAATGGCAATGACAATCATGGACAATTAAAGGTAAAACAGTCATCTGCCCCAATCCGCAAAAAGGGACAAATTAAGGATAAGTGTCATTTT
TGCAACAAACCAGGACACTATAAAAAAGATTGTCTAAAACGTAAGGCATGGTTCGAGAATAAAGGGATTCCTTACGACCCGAACCACAAACCCAAATGA
Protein sequenceShow/hide protein sequence
MYKHIYFVIATSAPVSLYSHATSIIKFNELNFSDWCEQIRFHLGVLDLDLALLSEKPAAITSASSDEDRSFYKAWERSNRLSLMFITLTNIKFDGSRTIHEHILEMTNLA
ARLKTMKMEVNENFLVTFILNFLPSEYGPFHMNYNILKDKWNVHELQSMLIQEEARLKKPMIHSVNLMGHKRAGKKHEKKNGNDNHGQLKVKQSSAPIRKKGQIKDKCHF
CNKPGHYKKDCLKRKAWFENKGIPYDPNHKPK