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Sed0000021 (gene) of Chayote v1 genome

Gene IDSed0000021
OrganismSechium edule (Chayote v1)
DescriptionAT-hook motif nuclear-localized protein 20-like
Genome locationLG12:6522767..6523172
RNA-Seq ExpressionSed0000021
SyntenySed0000021
Gene Ontology termsGO:0005622 - intracellular (cellular component)
InterPro domainsIPR040381 - Uncharacterized protein At4g14450-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049279.1 hypothetical protein E6C27_scaffold171G005190 [Cucumis melo var. makuwa]4.9e-2765.14Show/hide
Query:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPI
        M+DAER  A           PTRLQS+APASIEIKR ++WNV IPLL+PLVSPSSCGNSG ++VL MA+N AREE     KGL+FT WQHPA+PFYY P+
Subjt:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPI

Query:  PRA-PFVPV
        PRA  FVPV
Subjt:  PRA-PFVPV

KAE8650334.1 hypothetical protein Csa_009641 [Cucumis sativus]3.4e-2866.97Show/hide
Query:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPI
        M+DAER  A           PTRLQS+APASIEIKR++NWNVAIPLL+PLVSPSSCGNS  +++L MAEN AREE     KGL+FT WQHPA+PFYY P+
Subjt:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPI

Query:  PRA-PFVPV
        PRA PFVPV
Subjt:  PRA-PFVPV

KAG6582368.1 AT-hook motif nuclear-localized protein 20, partial [Cucurbita argyrosperma subsp. sororia]2.9e-1966.29Show/hide
Query:  PTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPIPR-APFVPV
        PTRLQS+APASI I R+ NWNVAIPLLTPLVS S CGNS  D VLLM EN AREE          T WQHPA P Y GP+P   PFVPV
Subjt:  PTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPIPR-APFVPV

XP_022143991.1 uncharacterized protein At4g14450, chloroplastic-like [Momordica charantia]9.8e-2055.45Show/hide
Query:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEV-LLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGP
        M DAER  A     DS  +  TRLQ RAP+SI+I R  +WNVAIPLL+PLVSP       L++V +LM EN AREE + + K  +FT W+HPA+PFYYGP
Subjt:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEV-LLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGP

Query:  IPR-APFVPV
        + R  PFVPV
Subjt:  IPR-APFVPV

XP_022924297.1 AT-hook motif nuclear-localized protein 20-like [Cucurbita moschata]4.1e-1869.62Show/hide
Query:  PTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGP
        PTRLQS+APASI I R+ NWNVAIPLLTPLVS S CGNS  D VLLM EN AREE     KGL+ T WQHPA PF   P
Subjt:  PTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGP

TrEMBL top hitse value%identityAlignment
A0A0A0L8D3 Uncharacterized protein1.6e-2866.97Show/hide
Query:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPI
        M+DAER  A           PTRLQS+APASIEIKR++NWNVAIPLL+PLVSPSSCGNS  +++L MAEN AREE     KGL+FT WQHPA+PFYY P+
Subjt:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPI

Query:  PRA-PFVPV
        PRA PFVPV
Subjt:  PRA-PFVPV

A0A5D3D1A6 Uncharacterized protein2.4e-2765.14Show/hide
Query:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPI
        M+DAER  A           PTRLQS+APASIEIKR ++WNV IPLL+PLVSPSSCGNSG ++VL MA+N AREE     KGL+FT WQHPA+PFYY P+
Subjt:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPI

Query:  PRA-PFVPV
        PRA  FVPV
Subjt:  PRA-PFVPV

A0A6J1CRZ0 uncharacterized protein At4g14450, chloroplastic-like4.8e-2055.45Show/hide
Query:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEV-LLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGP
        M DAER  A     DS  +  TRLQ RAP+SI+I R  +WNVAIPLL+PLVSP       L++V +LM EN AREE + + K  +FT W+HPA+PFYYGP
Subjt:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEV-LLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGP

Query:  IPR-APFVPV
        + R  PFVPV
Subjt:  IPR-APFVPV

A0A6J1E8H9 AT-hook motif nuclear-localized protein 20-like2.0e-1869.62Show/hide
Query:  PTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGP
        PTRLQS+APASI I R+ NWNVAIPLLTPLVS S CGNS  D VLLM EN AREE     KGL+ T WQHPA PF   P
Subjt:  PTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGP

A0A6P6WRY0 uncharacterized protein At4g14450, chloroplastic-like1.3e-1244.74Show/hide
Query:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLV-SPSSCGNSGLDEVLLMAENMAREEGKDKGK-------GLSFTMWQHPA
        MAD  R    +      G  P+RLQ RAPASI+I R  +WNVAIPLL+PL+ SP+S G++ L   +        EE + K K         SF  WQHPA
Subjt:  MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLV-SPSSCGNSGLDEVLLMAENMAREEGKDKGK-------GLSFTMWQHPA

Query:  SPFYYGPIPRAPFV
        +PF Y P P  PFV
Subjt:  SPFYYGPIPRAPFV

SwissProt top hitse value%identityAlignment
Q6NN02 Uncharacterized protein At4g14450, chloroplastic1.1e-0544.83Show/hide
Query:  TRLQSRAPASIEIKRS--MNWNVAIPLLTPLVS--PSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPIPRAP
        ++LQ RAP S+ IK +   NWNVAIPLL+PL     SS   S +       E    EE K   K   F  WQHPASPF Y P    P
Subjt:  TRLQSRAPASIEIKRS--MNWNVAIPLLTPLVS--PSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPIPRAP

Arabidopsis top hitse value%identityAlignment
AT1G04330.1 unknown protein2.9e-0940.4Show/hide
Query:  SAAAAEVVDSQGKVPTRLQSRAPASIEIKR-SMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREE---GKDKGKGLSFTMWQHPASPFYYGPIP
        S+ A  +  S  +  +RLQ RAP  ++I     NW VAIPLL+P  SP                 M REE   GK+  K   F  WQHPA+PFYY P P
Subjt:  SAAAAEVVDSQGKVPTRLQSRAPASIEIKR-SMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREE---GKDKGKGLSFTMWQHPASPFYYGPIP

AT3G23170.1 unknown protein8.6e-0641.05Show/hide
Query:  PTRLQSRAPASIEI---KRSMNWNVAIPLLTPL-VSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGP---IPRAPFVPV
        P+RL  R PA   +     + NWN AIPLL+PL +SP S   S +D+   + +N +     +K     F  WQHPA+PFYY     +P  PFVPV
Subjt:  PTRLQSRAPASIEI---KRSMNWNVAIPLLTPL-VSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGP---IPRAPFVPV

AT4G14450.1 unknown protein7.8e-0744.83Show/hide
Query:  TRLQSRAPASIEIKRS--MNWNVAIPLLTPLVS--PSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPIPRAP
        ++LQ RAP S+ IK +   NWNVAIPLL+PL     SS   S +       E    EE K   K   F  WQHPASPF Y P    P
Subjt:  TRLQSRAPASIEIKRS--MNWNVAIPLLTPLVS--PSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPIPRAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGCTGAGAGAAGTGCTGCGGCCGCCGAAGTTGTGGATTCTCAAGGCAAAGTGCCGACGCGGCTGCAAAGTCGGGCGCCGGCATCGATAGAGATAAAGCGGTC
GATGAATTGGAATGTGGCGATACCGTTGCTGACGCCTCTCGTGTCGCCTTCCTCGTGTGGGAATTCAGGGCTCGATGAGGTGTTGTTGATGGCTGAGAATATGGCGAGGG
AGGAAGGCAAAGACAAAGGCAAAGGGCTGAGCTTTACGATGTGGCAGCACCCGGCGTCTCCATTCTATTACGGGCCGATCCCAAGGGCTCCATTTGTGCCTGTGTGA
mRNA sequenceShow/hide mRNA sequence
AAATCTCCAAACCAGAATTTGCAATCTCCTCAGTTCTTTCTTTTCTAACTTTTTAAAAAGAACAGCCTCTTGCGTTGAAATGGCTGATGCTGAGAGAAGTGCTGCGGCCG
CCGAAGTTGTGGATTCTCAAGGCAAAGTGCCGACGCGGCTGCAAAGTCGGGCGCCGGCATCGATAGAGATAAAGCGGTCGATGAATTGGAATGTGGCGATACCGTTGCTG
ACGCCTCTCGTGTCGCCTTCCTCGTGTGGGAATTCAGGGCTCGATGAGGTGTTGTTGATGGCTGAGAATATGGCGAGGGAGGAAGGCAAAGACAAAGGCAAAGGGCTGAG
CTTTACGATGTGGCAGCACCCGGCGTCTCCATTCTATTACGGGCCGATCCCAAGGGCTCCATTTGTGCCTGTGTGA
Protein sequenceShow/hide protein sequence
MADAERSAAAAEVVDSQGKVPTRLQSRAPASIEIKRSMNWNVAIPLLTPLVSPSSCGNSGLDEVLLMAENMAREEGKDKGKGLSFTMWQHPASPFYYGPIPRAPFVPV