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Sed0000026 (gene) of Chayote v1 genome

Gene IDSed0000026
OrganismSechium edule (Chayote v1)
Description60S acidic ribosomal protein family
Genome locationLG01:57023370..57024607
RNA-Seq ExpressionSed0000026
SyntenySed0000026
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]1.0e-4393.04Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNT PGLDDVK IL SVGAEVDEDR+ SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

KAG7010354.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]1.0e-4393.04Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNT PGLDDVK IL SVGAEVDEDR+ SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_022152975.1 60S acidic ribosomal protein P2B-like [Momordica charantia]2.3e-4391.3Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNT PG DDVKNIL SVG EVDEDR+ SLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG AGGGAAPAAAE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_022944125.1 60S acidic ribosomal protein P2B-like [Cucurbita moschata]1.0e-4393.04Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNT PGLDDVK IL SVGAEVDEDR+ SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_022986046.1 60S acidic ribosomal protein P2B-like [Cucurbita maxima]3.0e-4392.17Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNT PGLDDVK IL SVGAEVDEDR+ SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAA EQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A2P6QDB6 Uncharacterized protein2.3e-4188.6Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE
        MKVVAAYLLAVLGGNT P  DDVKNIL SVGAE D DR+  LLSQVKGKDITELIASGREKLASVPSGGGAV VAAPA G GGGAA AAAEQKKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

A0A6J1DJB9 60S acidic ribosomal protein P2B-like1.1e-4391.3Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNT PG DDVKNIL SVG EVDEDR+ SLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG AGGGAAPAAAE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1FYH3 60S acidic ribosomal protein P2B-like5.0e-4493.04Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNT PGLDDVK IL SVGAEVDEDR+ SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1GZW9 60S acidic ribosomal protein P2B-like4.7e-4292.17Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNT PGLDDVK+IL SVGAEVD DR+ SLL+QVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG AGGGAAPAAAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like1.5e-4392.17Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNT PGLDDVK IL SVGAEVDEDR+ SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAA EQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG-AGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B3.1e-3573.68Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE
        MKV+AAYLLAVLGGNT P  DDVK+IL SVGAE DE+++  LL+++K KDITE+IA+GRE+L+SVPSGGGA+ + APA  AGGGAAP A E KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESD+DMGFSLFD
Subjt:  KEESDDDMGFSLFD

P41099 60S acidic ribosomal protein P22.1e-3172.17Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQ-KKEEKVE
        MKV+AA+LLA+LGGNT P  +D+K+IL SVGA+ D+D++  LLSQVKGKDITELIASGRE+LASVPSGGG VAVAA AGG GG A  AAAE+ KKEEK E
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQ-KKEEKVE

Query:  EKEESDDDMGFSLFD
          EESD+++GFSLFD
Subjt:  EKEESDDDMGFSLFD

P46252 60S acidic ribosomal protein P2A3.2e-3274.56Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE
        MK VAAYLLAVL GN  P  DD+  IL SVG EVD +++  LLSQ+ GKDITELIA+GREK ASVP GGG VAVAA A  A GGAAP AAE KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

Q9LXM8 60S acidic ribosomal protein P2-41.8e-3066.67Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE
        MKV AA+LLAVLGGN  P  D++K+I+ +VGA+VD + +  LL +V GKDI ELIASGREKLASVPSGGG    AAP+ G GG AAPA   +KKE K EE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLF+
Subjt:  KEESDDDMGFSLFD

Q9SLF7 60S acidic ribosomal protein P2-21.8e-3067.83Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G   P   D+K IL SVGAE ++ ++  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family1.3e-3167.83Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G   P   D+K IL SVGAE ++ ++  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.2 60S acidic ribosomal protein family1.3e-3167.83Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G   P   D+K IL SVGAE ++ ++  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.3 60S acidic ribosomal protein family1.3e-3167.83Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G   P   D+K IL SVGAE ++ ++  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT3G44590.1 60S acidic ribosomal protein family1.3e-3166.67Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE
        MKV AA+LLAVLGGN  P  D++K+I+ +VGA+VD + +  LL +V GKDI ELIASGREKLASVPSGGG    AAP+ G GG AAPA   +KKE K EE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLF+
Subjt:  KEESDDDMGFSLFD

AT3G44590.2 60S acidic ribosomal protein family1.3e-3166.67Show/hide
Query:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE
        MKV AA+LLAVLGGN  P  D++K+I+ +VGA+VD + +  LL +V GKDI ELIASGREKLASVPSGGG    AAP+ G GG AAPA   +KKE K EE
Subjt:  MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLF+
Subjt:  KEESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTTGTGGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACTTGCCCCGGACTCGACGATGTGAAGAATATTCTTTATTCAGTCGGGGCTGAGGTCGATGAGGA
CAGGGTCGCCTCGTTATTATCACAAGTGAAAGGGAAGGATATTACGGAGTTGATAGCTTCCGGACGGGAGAAGTTGGCGTCCGTGCCGTCTGGTGGCGGTGCAGTCGCCG
TCGCCGCCCCTGCCGGCGGTGCTGGTGGTGGTGCAGCACCGGCAGCTGCCGAGCAGAAGAAAGAGGAGAAAGTTGAGGAAAAAGAAGAATCCGACGATGACATGGGTTTC
AGCCTCTTTGACTGA
mRNA sequenceShow/hide mRNA sequence
TAAAAAAAACCCTAATCATATGTATATAGTTGCGTCCGAACCATCTGGTTTCATTCTTTGACCGACGACTACGATCGCTCTCCCTCTCGGTTGCAGCTTCTGTTTCGAAC
ATCACAACAGAGATGAAGGTTGTGGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACTTGCCCCGGACTCGACGATGTGAAGAATATTCTTTATTCAGTCGGGGCTGA
GGTCGATGAGGACAGGGTCGCCTCGTTATTATCACAAGTGAAAGGGAAGGATATTACGGAGTTGATAGCTTCCGGACGGGAGAAGTTGGCGTCCGTGCCGTCTGGTGGCG
GTGCAGTCGCCGTCGCCGCCCCTGCCGGCGGTGCTGGTGGTGGTGCAGCACCGGCAGCTGCCGAGCAGAAGAAAGAGGAGAAAGTTGAGGAAAAAGAAGAATCCGACGAT
GACATGGGTTTCAGCCTCTTTGACTGAGCAGCTCATTCGGCGTCCTTATCAGTTAGTGTTTTATTTGAATTTCGTTCGAATTTCCGGCCTTGTTGGGTAGGTTGATTGGA
TTTTTTTTTTTTCTTTTATCTTATTTTGAACTCGAAAATTTTGATAGATGAAAGTGCAATTCTCAATTTCAACATTTCAGTAATTATTGTCATATTTGAGGTTGACTATG
ATTCTCAATGTTTCTCTTCTATGATTTCTTGTCTTTTGAATATATGCATCATGCAATTATCTAGGTTTTTATTGGATGGATTGGGCCTTTGTTTTATACTGTTCAGAGAA
CCTTTAAAAAGAGATCTGTATTTGGTTTAGACCTTATGGTTGGTTTATGGCTAATTTCTTCAGTTTGT
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNTCPGLDDVKNILYSVGAEVDEDRVASLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAGGGAAPAAAEQKKEEKVEEKEESDDDMGF
SLFD