CuGenDBv2

Gene ID	Sed0000027
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Genome location	LG12:13168282..13171452
RNA-Seq Expression	Sed0000027
Synteny	Sed0000027
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008444153.1 PREDICTED: uncharacterized protein At4g08330, chloroplastic [Cucumis melo]

1.0e-68

82.72

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Query:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF
        M  SPV GDD A   H+ S SSAS + SSSRRDVYYSCGACGYELNLSS NRNT+TIGSKYGKSIKRGIISFLN+DESRFTQVDELQCVPHFSKNSWGLF
Subjt:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF

Query:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQE
        RRRI+LLCRKCGN+IGNA ++H +S+PLV +GSDSSSLPNEVSRC KYEVKIRALQPSSS E
Subjt:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQE

XP_011653802.1 uncharacterized protein At4g08330, chloroplastic [Cucumis sativus]

8.0e-69

83.33

Show/hide

Query:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF
        M  SPV GDD A   HV S SSAS + SSSRRDVYYSCGACGYELNLSS NRNT+TIGSKYGKSIKRGIISFLN+DESRFTQVDELQCVPHFSKNSWGLF
Subjt:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF

Query:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQE
        RRRI+LLCRKCGN+IGNA ++H +S+PLV +GSDSSSLPNEVSRC KYEVKIRALQPSSS E
Subjt:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQE

XP_022135315.1 uncharacterized protein At4g08330, chloroplastic [Momordica charantia]

2.5e-70

83.93

Show/hide

Query:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF
        M  SPV+GDD  D  H HS S+AS YSSSSRRDVYYSCGACGYELNLSSSNRNT+TIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSK+SWGLF
Subjt:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF

Query:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI
        RRR +LLCRKCGNHIGNA TS ASS PLV +GSD SSLP+EVSRC KYEVKIRALQPSSS + G PVI
Subjt:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI

XP_022937411.1 uncharacterized protein At4g08330, chloroplastic-like [Cucurbita moschata]

2.6e-67

80.36

Show/hide

Query:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF
        M  SPV  DD+ +  HV + SS S   SSSRRDVYYSCGACGYELNLSSSNRN +TIGSKYGKSIKRGIISFLN+DESRFTQVD+LQCVPHFSK+SWGLF
Subjt:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF

Query:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI
        +RRI+LLCRKCGNHIGNA TSH SS+PLV +GSD SSLPNEVSRC KYEVKIRALQPSSS E+G PVI
Subjt:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI

XP_038896624.1 uncharacterized protein At4g08330, chloroplastic [Benincasa hispida]

2.6e-67

80.36

Show/hide

Query:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF
        M  SPV GDD     H+ S SSAS + SSSRRDVYYSCGACG+ELNLSS NRNT+TIGSKY KSIKRGIISFLN+DESRFTQVDELQCVPHFSKNSWGLF
Subjt:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF

Query:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI
        RRRI+LLCRKCGNHIGNAR+S+ SS+PLV +GSD SSLPNEVSRC KYEVKIRALQPSSS E G  V+
Subjt:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L375 Uncharacterized protein

3.9e-69

83.33

Show/hide

Query:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF
        M  SPV GDD A   HV S SSAS + SSSRRDVYYSCGACGYELNLSS NRNT+TIGSKYGKSIKRGIISFLN+DESRFTQVDELQCVPHFSKNSWGLF
Subjt:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF

Query:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQE
        RRRI+LLCRKCGN+IGNA ++H +S+PLV +GSDSSSLPNEVSRC KYEVKIRALQPSSS E
Subjt:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQE

A0A1S3B9P1 uncharacterized protein At4g08330, chloroplastic

5.1e-69

82.72

Show/hide

Query:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF
        M  SPV GDD A   H+ S SSAS + SSSRRDVYYSCGACGYELNLSS NRNT+TIGSKYGKSIKRGIISFLN+DESRFTQVDELQCVPHFSKNSWGLF
Subjt:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF

Query:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQE
        RRRI+LLCRKCGN+IGNA ++H +S+PLV +GSDSSSLPNEVSRC KYEVKIRALQPSSS E
Subjt:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQE

A0A5D3D741 Uncharacterized protein

5.1e-69

82.72

Show/hide

Query:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF
        M  SPV GDD A   H+ S SSAS + SSSRRDVYYSCGACGYELNLSS NRNT+TIGSKYGKSIKRGIISFLN+DESRFTQVDELQCVPHFSKNSWGLF
Subjt:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF

Query:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQE
        RRRI+LLCRKCGN+IGNA ++H +S+PLV +GSDSSSLPNEVSRC KYEVKIRALQPSSS E
Subjt:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQE

A0A6J1C0S6 uncharacterized protein At4g08330, chloroplastic

1.2e-70

83.93

Show/hide

Query:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF
        M  SPV+GDD  D  H HS S+AS YSSSSRRDVYYSCGACGYELNLSSSNRNT+TIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSK+SWGLF
Subjt:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF

Query:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI
        RRR +LLCRKCGNHIGNA TS ASS PLV +GSD SSLP+EVSRC KYEVKIRALQPSSS + G PVI
Subjt:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI

A0A6J1FA98 uncharacterized protein At4g08330, chloroplastic-like

1.2e-67

80.36

Show/hide

Query:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF
        M  SPV  DD+ +  HV + SS S   SSSRRDVYYSCGACGYELNLSSSNRN +TIGSKYGKSIKRGIISFLN+DESRFTQVD+LQCVPHFSK+SWGLF
Subjt:  MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLF

Query:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI
        +RRI+LLCRKCGNHIGNA TSH SS+PLV +GSD SSLPNEVSRC KYEVKIRALQPSSS E+G PVI
Subjt:  RRRIRLLCRKCGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI

SwissProt top hits

e value

%identity

Alignment

Q9STN5 Uncharacterized protein At4g08330, chloroplastic

4.6e-43

62.24

Show/hide

Query:  HSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLFRRRIRLLCRKCGNHIGN
        +S S +S  SSSS R V YSCG+CGYELNLSS+NR T+TIGSKYGKS+K GIISF N+DE RF+QVDE QC+PHFS+ SWGLFR R +LLCRKC N+IGN
Subjt:  HSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLFRRRIRLLCRKCGNHIGN

Query:  ARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSS
        A    A    LV   SD +S    +   TKY+++IR+LQPSS+
Subjt:  ARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSS

Arabidopsis top hits

e value

%identity

Alignment

AT4G08330.1 unknown protein

3.3e-44

62.24

Show/hide

Query:  HSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLFRRRIRLLCRKCGNHIGN
        +S S +S  SSSS R V YSCG+CGYELNLSS+NR T+TIGSKYGKS+K GIISF N+DE RF+QVDE QC+PHFS+ SWGLFR R +LLCRKC N+IGN
Subjt:  HSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLFRRRIRLLCRKCGNHIGN

Query:  ARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSS
        A    A    LV   SD +S    +   TKY+++IR+LQPSS+
Subjt:  ARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSS

AT4G08330.2 unknown protein.

6.2e-35

55.24

Show/hide

Query:  HSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLFRRRIRLLCRKCGNHIGN
        +S S +S  SSSS R V           N SS+NR T+TIGSKYGKS+K GIISF N+DE RF+QVDE QC+PHFS+ SWGLFR R +LLCRKC N+IGN
Subjt:  HSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLFRRRIRLLCRKCGNHIGN

Query:  ARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSS
        A    A    LV   SD +S    +   TKY+++IR+LQPSS+
Subjt:  ARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSS

Sequences

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CDS sequence

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ATGACGCCGTCGCCGGTCATCGGAGACGATAACGCCGACAGAATTCACGTCCATTCCTGTTCGTCCGCTTCTCCCTACTCTTCTTCGTCTCGCAGGGACGTTTATTACAG
CTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCGAACCGCAATACAGCGACCATTGGCTCTAAATATGGTAAATCAATAAAGCGAGGGATCATATCGTTTCTAA
ACGTCGATGAGAGCAGATTTACACAGGTTGATGAACTCCAGTGTGTACCTCATTTTTCAAAGAACTCTTGGGGTCTGTTTCGCCGAAGAATTAGACTACTCTGTCGCAAG
TGCGGAAACCATATCGGAAACGCTCGTACAAGCCATGCTTCCTCTACCCCACTTGTTTTGAATGGGTCGGATTCTTCATCCTTGCCCAATGAAGTTTCTAGGTGCACGAA
ATATGAAGTTAAAATTCGTGCCCTACAGCCCTCATCTTCACAAGAATCTGGCGTCCCAGTTATTTAA

mRNA sequence

Show/hide mRNA sequence

GTCGGGTCCAGAGAAATTAAAAAAAAGAAGAAAAAAGAGAGAAAAAGAACAATTGTTTTTTATTTATTTATTTGATTTCTTTTCCTTTTTTGGGCCATCGATTTCTTCAA
TTTCTCATCTTCAAGCTGCGGTTCTTCACCATCGCTCTTCCTCCAATTCGCCGCACTTCTTTTCAAACAATCTGCAAATTTTATTTTTCAGATTTCAGTTTCAACAGTTT
TTGTGAGTTCGCTCAGATTAATTCAGAACTTGATCGTTACTGTCGAAATTGGATTCGCCATTTACGACCTCGAAATCTCCGCCCACCGTCGCAGCCACCATCCGGTACGG
TGTCGTCTTCTGAACCGGAAGAATGACGCCGTCGCCGGTCATCGGAGACGATAACGCCGACAGAATTCACGTCCATTCCTGTTCGTCCGCTTCTCCCTACTCTTCTTCGT
CTCGCAGGGACGTTTATTACAGCTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCGAACCGCAATACAGCGACCATTGGCTCTAAATATGGTAAATCAATAAAG
CGAGGGATCATATCGTTTCTAAACGTCGATGAGAGCAGATTTACACAGGTTGATGAACTCCAGTGTGTACCTCATTTTTCAAAGAACTCTTGGGGTCTGTTTCGCCGAAG
AATTAGACTACTCTGTCGCAAGTGCGGAAACCATATCGGAAACGCTCGTACAAGCCATGCTTCCTCTACCCCACTTGTTTTGAATGGGTCGGATTCTTCATCCTTGCCCA
ATGAAGTTTCTAGGTGCACGAAATATGAAGTTAAAATTCGTGCCCTACAGCCCTCATCTTCACAAGAATCTGGCGTCCCAGTTATTTAAACAAGGACTTTGGTTTTTACT
GAATGGTCCTACAAGCTAAAAGAATTGAAGCTGTTTTCTTGTGAATAAGGTCTGATATGGAAGCAAGTGTAATTGAAAGGATTCACAGTGATTGTTCCTGCAAGTGTGAT
TTATACAAGGGAATTGTTTCAAAACTAGTGGTGTATCTGGGTTTTTTTTTTTTTTTTTTCGCAACAATGCATTTTCAGATGTGGCTCCACGGA

Protein sequence

Show/hide protein sequence

MTPSPVIGDDNADRIHVHSCSSASPYSSSSRRDVYYSCGACGYELNLSSSNRNTATIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKNSWGLFRRRIRLLCRK
CGNHIGNARTSHASSTPLVLNGSDSSSLPNEVSRCTKYEVKIRALQPSSSQESGVPVI

Sed0000027 (gene) of Chayote v1 genome