; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000055 (gene) of Chayote v1 genome

Gene IDSed0000055
OrganismSechium edule (Chayote v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationLG01:8193120..8193584
RNA-Seq ExpressionSed0000055
SyntenySed0000055
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067737.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]5.7e-4561.25Show/hide
Query:  PPPPPED-SMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAAD--RPRPSRTVVISVRLFQYGEAG--IGE
        PPPPP+D  +  LSA +LDFL++AGLSALA+MF+Y IFTCYERK+  R+GDIE G      + + P +   D  R RPS   VIS RLFQYG  G  IG+
Subjt:  PPPPPED-SMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAAD--RPRPSRTVVISVRLFQYGEAG--IGE

Query:  VNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS
         NADCSICLDEF +GE+CR+LP CKHVFHRFCIDQWL  + +CP+CRSPV+ R VY  PS
Subjt:  VNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS

KAE8653247.1 hypothetical protein Csa_019633 [Cucumis sativus]3.1e-4359.63Show/hide
Query:  PPPPPEDSM--SALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAADRP--RPSRTVVISVRLFQYGEAG--IG
        PPPPP D +    LS  +LDFL+ AGLSALALMF+Y +FTC ERKY  R+GDIE G      + + P +   D P  RPS   VIS RLFQYG  G  IG
Subjt:  PPPPPEDSM--SALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAADRP--RPSRTVVISVRLFQYGEAG--IG

Query:  EVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS
        + NADCSICLDEF +GE+CR+LP CKHVFHRFCID+WL  + +CP+CRSPV+ R VY  PS
Subjt:  EVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS

XP_004151031.2 RING-H2 finger protein ATL39 [Cucumis sativus]3.1e-4359.63Show/hide
Query:  PPPPPEDSM--SALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAADRP--RPSRTVVISVRLFQYGEAG--IG
        PPPPP D +    LS  +LDFL+ AGLSALALMF+Y +FTC ERKY  R+GDIE G      + + P +   D P  RPS   VIS RLFQYG  G  IG
Subjt:  PPPPPEDSM--SALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAADRP--RPSRTVVISVRLFQYGEAG--IG

Query:  EVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS
        + NADCSICLDEF +GE+CR+LP CKHVFHRFCID+WL  + +CP+CRSPV+ R VY  PS
Subjt:  EVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS

XP_008457570.2 PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo]5.7e-4561.25Show/hide
Query:  PPPPPED-SMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAAD--RPRPSRTVVISVRLFQYGEAG--IGE
        PPPPP+D  +  LSA +LDFL++AGLSALA+MF+Y IFTCYERK+  R+GDIE G+     + + P +   D  R RPS   VIS RLFQYG  G  IG+
Subjt:  PPPPPED-SMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAAD--RPRPSRTVVISVRLFQYGEAG--IGE

Query:  VNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS
         NADCSICLDEF +GE+CR+LP CKHVFHRFCIDQWL  + +CP+CRSPV+ R VY  PS
Subjt:  VNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS

XP_038895799.1 E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]4.6e-4763.58Show/hide
Query:  MPPPPP---EDSMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRS-RVAQPPPAPAADRP--RPSRTVVISVRLFQYGEAGI
        MPPPPP   E S+  LS  +LDFL+ AGLSALALM VY IFTCYERKY  R+GDIE G    S  VA+P  + A D    R + T VIS +LFQYGE G+
Subjt:  MPPPPP---EDSMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRS-RVAQPPPAPAADRP--RPSRTVVISVRLFQYGEAGI

Query:  GEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS
           NADCSICLDEF +GE+CR+LP CKHVFHRFCIDQWL  + HCP+CRSPVH R VY +PS
Subjt:  GEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS

TrEMBL top hitse value%identityAlignment
A0A0A0M0H1 RING-type E3 ubiquitin transferase1.5e-4359.63Show/hide
Query:  PPPPPEDSM--SALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAADRP--RPSRTVVISVRLFQYGEAG--IG
        PPPPP D +    LS  +LDFL+ AGLSALALMF+Y +FTC ERKY  R+GDIE G      + + P +   D P  RPS   VIS RLFQYG  G  IG
Subjt:  PPPPPEDSM--SALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAADRP--RPSRTVVISVRLFQYGEAG--IG

Query:  EVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS
        + NADCSICLDEF +GE+CR+LP CKHVFHRFCID+WL  + +CP+CRSPV+ R VY  PS
Subjt:  EVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS

A0A1S3C5T1 RING-H2 finger protein ATL39-like2.7e-4561.25Show/hide
Query:  PPPPPED-SMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAAD--RPRPSRTVVISVRLFQYGEAG--IGE
        PPPPP+D  +  LSA +LDFL++AGLSALA+MF+Y IFTCYERK+  R+GDIE G+     + + P +   D  R RPS   VIS RLFQYG  G  IG+
Subjt:  PPPPPED-SMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAAD--RPRPSRTVVISVRLFQYGEAG--IGE

Query:  VNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS
         NADCSICLDEF +GE+CR+LP CKHVFHRFCIDQWL  + +CP+CRSPV+ R VY  PS
Subjt:  VNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS

A0A5A7VKM2 RING-H2 finger protein ATL39-like2.7e-4561.25Show/hide
Query:  PPPPPED-SMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAAD--RPRPSRTVVISVRLFQYGEAG--IGE
        PPPPP+D  +  LSA +LDFL++AGLSALA+MF+Y IFTCYERK+  R+GDIE G      + + P +   D  R RPS   VIS RLFQYG  G  IG+
Subjt:  PPPPPED-SMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAAD--RPRPSRTVVISVRLFQYGEAG--IGE

Query:  VNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS
         NADCSICLDEF +GE+CR+LP CKHVFHRFCIDQWL  + +CP+CRSPV+ R VY  PS
Subjt:  VNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS

A0A5D3BEF0 RING-H2 finger protein ATL39-like2.7e-4561.25Show/hide
Query:  PPPPPED-SMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAAD--RPRPSRTVVISVRLFQYGEAG--IGE
        PPPPP+D  +  LSA +LDFL++AGLSALA+MF+Y IFTCYERK+  R+GDIE G+     + + P +   D  R RPS   VIS RLFQYG  G  IG+
Subjt:  PPPPPED-SMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAAD--RPRPSRTVVISVRLFQYGEAG--IGE

Query:  VNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS
         NADCSICLDEF +GE+CR+LP CKHVFHRFCIDQWL  + +CP+CRSPV+ R VY  PS
Subjt:  VNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS

A0A6J1I603 RING-type E3 ubiquitin transferase1.1e-4158.71Show/hide
Query:  PPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEAGIGEVNADC
        PPPPPE S+  LS  +LDFL+ AGL  LA+  +Y I+T YE KY  RS DIE G     R A      ++   R   T VIS RLFQYGE G+   NADC
Subjt:  PPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFTCYERKY--RSGDIEAGEQRRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEAGIGEVNADC

Query:  SICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS
        SICLDEFV+GE+CR+LP CKHVFHRFCIDQWL  + HCPLCRSPVH R ++ H S
Subjt:  SICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS

SwissProt top hitse value%identityAlignment
Q5XF85 E3 ubiquitin-protein ligase ATL421.3e-1234.44Show/hide
Query:  PPPEDSMSALSARELDFLDLAGLSAL--ALMFVYVIFT-CYERKYRSGDIEAGEQRR--SRVAQ----PPPAPAADR-PRPSRTVVISVRLFQYGEAGIG
        PPP  +   ++  E     + G+ A+  AL FV +++  C     RSG   +G++RR   R+ Q         ++DR     +T + S+ LF++      
Subjt:  PPPEDSMSALSARELDFLDLAGLSAL--ALMFVYVIFT-CYERKYRSGDIEAGEQRR--SRVAQ----PPPAPAADR-PRPSRTVVISVRLFQYGEAGIG

Query:  EVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPV
        +   DCS+CL +F   E+ RLLP C+H FH  CIDQWL +   CPLCR  V
Subjt:  EVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPV

Q7XLY8 E3 ubiquitin-protein ligase Os04g05909007.0e-1448.65Show/hide
Query:  TVVISVRLFQYGEAGIGEVN-ADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTV
        T++  + + +Y   G G V+  DCS+CL EF DGE  RLLP C H FH+ CID WL+   +CPLCR+ + F TV
Subjt:  TVVISVRLFQYGEAGIGEVN-ADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTV

Q9LX93 E3 ubiquitin-protein ligase RING11.7e-1232.53Show/hide
Query:  PPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFTCYERKYRSGDIEAGEQRRS---------------RVAQPPPAPAADRPRPSRTVVISVRLFQ
        PPPPP   +S L    +  +    L    + F+Y+  T  +R+  +  +  G+  +                 V Q P          S TVV     F+
Subjt:  PPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFTCYERKYRSGDIEAGEQRRS---------------RVAQPPPAPAADRPRPSRTVVISVRLFQ

Query:  YGEAGIGEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPH
         GE  I     +CS+CL+EF + E  RLLP C H FH  CID WL    +CPLCR+PV   T  PH
Subjt:  YGEAGIGEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPH

Q9M0R7 RING-H2 finger protein ATL392.3e-1239.13Show/hide
Query:  YVIFTCYERKYRSGDIEAGEQRRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEA-----GIGEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQ
        Y I  C  R   +GDI   E+ R    +PP    A+        + S   F Y EA     GIGE+  +C +CL+EF D E  RL+P C HVFH  C+D 
Subjt:  YVIFTCYERKYRSGDIEAGEQRRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEA-----GIGEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQ

Query:  WLRKKLHCPLCRSPV
        WL     CP+CR+ V
Subjt:  WLRKKLHCPLCRSPV

Q9SL78 Putative RING-H2 finger protein ATL121.7e-1232.19Show/hide
Query:  PPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFT-CYERKYRSGDIEAGEQ-RRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEAGIGEVNADC
        PPPP   + S L    L  +         L FV +++  C+    RS     GE+ R  R+ Q     ++      +  + S+  F++      +   +C
Subjt:  PPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFT-CYERKYRSGDIEAGEQ-RRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEAGIGEVNADC

Query:  SICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVH
        S+CL +F D E+ RLLP C+H FH  CIDQWL +   CPLCR+ V+
Subjt:  SICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVH

Arabidopsis top hitse value%identityAlignment
AT2G20030.1 RING/U-box superfamily protein1.2e-1332.19Show/hide
Query:  PPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFT-CYERKYRSGDIEAGEQ-RRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEAGIGEVNADC
        PPPP   + S L    L  +         L FV +++  C+    RS     GE+ R  R+ Q     ++      +  + S+  F++      +   +C
Subjt:  PPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFT-CYERKYRSGDIEAGEQ-RRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEAGIGEVNADC

Query:  SICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVH
        S+CL +F D E+ RLLP C+H FH  CIDQWL +   CPLCR+ V+
Subjt:  SICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVH

AT4G09100.1 RING/U-box superfamily protein1.6e-1339.13Show/hide
Query:  YVIFTCYERKYRSGDIEAGEQRRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEA-----GIGEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQ
        Y I  C  R   +GDI   E+ R    +PP    A+        + S   F Y EA     GIGE+  +C +CL+EF D E  RL+P C HVFH  C+D 
Subjt:  YVIFTCYERKYRSGDIEAGEQRRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEA-----GIGEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQ

Query:  WLRKKLHCPLCRSPV
        WL     CP+CR+ V
Subjt:  WLRKKLHCPLCRSPV

AT4G28890.1 RING/U-box superfamily protein9.4e-1434.44Show/hide
Query:  PPPEDSMSALSARELDFLDLAGLSAL--ALMFVYVIFT-CYERKYRSGDIEAGEQRR--SRVAQ----PPPAPAADR-PRPSRTVVISVRLFQYGEAGIG
        PPP  +   ++  E     + G+ A+  AL FV +++  C     RSG   +G++RR   R+ Q         ++DR     +T + S+ LF++      
Subjt:  PPPEDSMSALSARELDFLDLAGLSAL--ALMFVYVIFT-CYERKYRSGDIEAGEQRR--SRVAQ----PPPAPAADR-PRPSRTVVISVRLFQYGEAGIG

Query:  EVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPV
        +   DCS+CL +F   E+ RLLP C+H FH  CIDQWL +   CPLCR  V
Subjt:  EVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPV

AT4G33565.1 RING/U-box superfamily protein4.1e-1750Show/hide
Query:  TVVISVRLFQYGEAGIGEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPV
        TV+ S+++ QY +        DCS+CL EF + E  RLLP CKH FH +CID WLR   +CPLCR+P+
Subjt:  TVVISVRLFQYGEAGIGEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPV

AT5G10380.1 RING/U-box superfamily protein1.2e-1332.53Show/hide
Query:  PPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFTCYERKYRSGDIEAGEQRRS---------------RVAQPPPAPAADRPRPSRTVVISVRLFQ
        PPPPP   +S L    +  +    L    + F+Y+  T  +R+  +  +  G+  +                 V Q P          S TVV     F+
Subjt:  PPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFTCYERKYRSGDIEAGEQRRS---------------RVAQPPPAPAADRPRPSRTVVISVRLFQ

Query:  YGEAGIGEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPH
         GE  I     +CS+CL+EF + E  RLLP C H FH  CID WL    +CPLCR+PV   T  PH
Subjt:  YGEAGIGEVNADCSICLDEFVDGEVCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCCGCCGCCGCCGGAGGACTCCATGTCCGCTCTATCGGCTCGCGAACTCGACTTCCTAGATCTCGCTGGACTATCCGCTCTTGCCTTAATGTTCGTGTACGTAAT
CTTCACCTGTTACGAGCGCAAATACCGAAGCGGCGACATCGAAGCCGGAGAGCAGCGTCGGTCGAGGGTGGCCCAACCTCCGCCTGCACCGGCGGCGGATCGACCACGGC
CGTCGAGGACGGTGGTGATTTCAGTGAGGCTGTTCCAATACGGAGAAGCAGGAATCGGAGAGGTAAATGCAGACTGTTCGATTTGTTTGGATGAATTCGTGGACGGTGAG
GTTTGTCGATTGTTACCGGCGTGTAAACACGTTTTTCATCGATTTTGTATCGATCAATGGCTTCGGAAGAAACTTCACTGTCCTCTTTGTCGTTCCCCTGTTCATTTTCG
TACTGTTTATCCGCATCCGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCCGCCGCCGCCGGAGGACTCCATGTCCGCTCTATCGGCTCGCGAACTCGACTTCCTAGATCTCGCTGGACTATCCGCTCTTGCCTTAATGTTCGTGTACGTAAT
CTTCACCTGTTACGAGCGCAAATACCGAAGCGGCGACATCGAAGCCGGAGAGCAGCGTCGGTCGAGGGTGGCCCAACCTCCGCCTGCACCGGCGGCGGATCGACCACGGC
CGTCGAGGACGGTGGTGATTTCAGTGAGGCTGTTCCAATACGGAGAAGCAGGAATCGGAGAGGTAAATGCAGACTGTTCGATTTGTTTGGATGAATTCGTGGACGGTGAG
GTTTGTCGATTGTTACCGGCGTGTAAACACGTTTTTCATCGATTTTGTATCGATCAATGGCTTCGGAAGAAACTTCACTGTCCTCTTTGTCGTTCCCCTGTTCATTTTCG
TACTGTTTATCCGCATCCGTCTTGA
Protein sequenceShow/hide protein sequence
MPPPPPEDSMSALSARELDFLDLAGLSALALMFVYVIFTCYERKYRSGDIEAGEQRRSRVAQPPPAPAADRPRPSRTVVISVRLFQYGEAGIGEVNADCSICLDEFVDGE
VCRLLPACKHVFHRFCIDQWLRKKLHCPLCRSPVHFRTVYPHPS