; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000109 (gene) of Chayote v1 genome

Gene IDSed0000109
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S21, chloroplastic-like
Genome locationLG08:37554176..37556234
RNA-Seq ExpressionSed0000109
SyntenySed0000109
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21
IPR038380 - Ribosomal protein S21 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439325.1 PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo]2.1e-4567.86Show/hide
Query:  MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQEC
        MAAAATSS+T FFS LSISKSS IH  SVS NFQS PKSK  RL A+R +  SSS E       + NYNVLI V + E E+Q VNRFR QVLRAGILQEC
Subjt:  MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS
        KRRRFFENSQAKRKRKAREAAKRNR RRF RP    E+QP ++T   K+ ++EDDNW+ YQVDLPY S
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS

XP_022954830.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata]9.2e-4971.86Show/hide
Query:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAA--RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECK
        AAT+SLT+FFS LSISK S  H ESVS NFQS  K   ARLAAA  R S  SSSPEST+  L+VRNYNVLI VD+ + EE+ VN+FRRQVLRAGILQECK
Subjt:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAA--RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS
        RRRFFENSQAKRKRKARE+AKRNR RR  +P+ +AE+Q KQE +RRKDM++ DDNW  YQVDLPYCS
Subjt:  RRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS

XP_022994169.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima]7.5e-5173.65Show/hide
Query:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAA--RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECK
        AAT+SLT+FFS LSISK S  H ESVS NFQS  K+K ARLAAA  R S  SSSPEST+  L+VRNYNVLI VD+ + EE+ VN+FRRQVLRAGILQECK
Subjt:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAA--RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS
        RRRFFENSQAKRKRKARE+AKRNR RR  +P+ +AE+Q KQET+RRKDMN+E+DNW+ YQVDLPYCS
Subjt:  RRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS

XP_023542788.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo]8.3e-5073.05Show/hide
Query:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAA--RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECK
        AAT+SLT+FFS LSISK S  H ESVS NFQS  K K ARLAAA  R S  SSSPEST+  L+VRNYNVLI VD+ + EE+ VN+FRRQVLRAGILQECK
Subjt:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAA--RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS
        RRRFFENSQAKRKRKARE+AKRNR RR  +P+ +AE+Q KQET+RRKDM++ DDNW  YQVDLPYCS
Subjt:  RRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS

XP_038894121.1 30S ribosomal protein S21, chloroplastic-like [Benincasa hispida]1.7e-5072.62Show/hide
Query:  MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQEC
        MAAAATSSLTKFFSSLSISKSS IH  SVS N QS PKSKPARL A R S   SS E    F  +R YNVLI V + E E+Q VNRFRRQVLRAGILQEC
Subjt:  MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS
        KRRRFFENSQAKRKRKAREAAKRNR R F RP  +AE+QP ++T +RK+ ++EDDNW+ YQVDLPYCS
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS

TrEMBL top hitse value%identityAlignment
A0A0A0LWJ6 Uncharacterized protein2.5e-4467.47Show/hide
Query:  MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQEC
        MAAAATSS+T FFS LSISKSS IH  SVS N QS P SK  RL A+R +  SSS E     L + NYN+LI V + E E+Q VNRFRRQVLRAGILQEC
Subjt:  MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPY
        KRRRFFENSQAKRKRKAREAAKRNR RRF RP     +QP Q+T   K+ ++EDDNW+ YQVDLPY
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPY

A0A1S3AZ70 uncharacterized protein LOC1034841451.0e-4567.86Show/hide
Query:  MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQEC
        MAAAATSS+T FFS LSISKSS IH  SVS NFQS PKSK  RL A+R +  SSS E       + NYNVLI V + E E+Q VNRFR QVLRAGILQEC
Subjt:  MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS
        KRRRFFENSQAKRKRKAREAAKRNR RRF RP    E+QP ++T   K+ ++EDDNW+ YQVDLPY S
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS

A0A6J1GTI1 30S ribosomal protein S21, chloroplastic-like4.5e-4971.86Show/hide
Query:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAA--RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECK
        AAT+SLT+FFS LSISK S  H ESVS NFQS  K   ARLAAA  R S  SSSPEST+  L+VRNYNVLI VD+ + EE+ VN+FRRQVLRAGILQECK
Subjt:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAA--RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS
        RRRFFENSQAKRKRKARE+AKRNR RR  +P+ +AE+Q KQE +RRKDM++ DDNW  YQVDLPYCS
Subjt:  RRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS

A0A6J1K257 30S ribosomal protein S21, chloroplastic-like3.6e-5173.65Show/hide
Query:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAA--RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECK
        AAT+SLT+FFS LSISK S  H ESVS NFQS  K+K ARLAAA  R S  SSSPEST+  L+VRNYNVLI VD+ + EE+ VN+FRRQVLRAGILQECK
Subjt:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAA--RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS
        RRRFFENSQAKRKRKARE+AKRNR RR  +P+ +AE+Q KQET+RRKDMN+E+DNW+ YQVDLPYCS
Subjt:  RRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS

E5GBW8 Structural constituent of ribosome1.0e-4567.86Show/hide
Query:  MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQEC
        MAAAATSS+T FFS LSISKSS IH  SVS NFQS PKSK  RL A+R +  SSS E       + NYNVLI V + E E+Q VNRFR QVLRAGILQEC
Subjt:  MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS
        KRRRFFENSQAKRKRKAREAAKRNR RRF RP    E+QP ++T   K+ ++EDDNW+ YQVDLPY S
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS

SwissProt top hitse value%identityAlignment
P82024 30S ribosomal protein S21, chloroplastic2.6e-1437.7Show/hide
Query:  AATSSLTKFFSSLSISKSSPIHCESVSF----------NFQSRPKSKPARLAAARRS----------APSSSPESTAAFLAVRNYNVLIAVDDKEHEEQT
        A+TSSL  F S L  S +S     +  F          N  S    K    A A++            PS +  +T  F +   YNV + VDD E+EE+ 
Subjt:  AATSSLTKFFSSLSISKSSPIHCESVSF----------NFQSRPKSKPARLAAARRS----------APSSSPESTAAFLAVRNYNVLIAVDDKEHEEQT

Query:  VNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPY
        +NRFRR+V+RAG++QECKRRR+FEN Q ++KRK REAAKRN  RR  R   +     K+E ++     D+ DNW+  +   P+
Subjt:  VNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPY

Arabidopsis top hitse value%identityAlignment
AT3G27160.1 Ribosomal protein S21 family protein6.4e-1636.41Show/hide
Query:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVR-------------------NYNVLIAVDDKEHEEQTV
        AA+ SLT F S +S  KS        +    S   S+  R   A  S       STA+ L+                      YNV + V+D E EE+ V
Subjt:  AATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVR-------------------NYNVLIAVDDKEHEEQTV

Query:  NRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQE---TSRRKDMNDEDDNWNSYQVDLP
        NRFRR+V+R G++QECKRRR+FEN Q ++KR+ R+AAKRN+ R   RP  +  Q+ ++E    ++ K  ++E+DNW     D+P
Subjt:  NRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQE---TSRRKDMNDEDDNWNSYQVDLP

AT5G63300.1 Ribosomal protein S21 family protein1.7e-0834.43Show/hide
Query:  MAAAATSSLTKFFSSLSISKS------SPIHCESVSFNFQSRPKSKPARLAAA------RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFR
        MA  +  SL++  SSL  SK        PI   S      S+  S   ++  A       R A  S   +   F     YNV +   D E EEQ VN F+
Subjt:  MAAAATSSLTKFFSSLSISKS------SPIHCESVSFNFQSRPKSKPARLAAA------RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFR

Query:  RQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRNRR---FIRPDLKAEQQPKQETSRRKDMNDEDDNWN--SYQVDLPY
        R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ R RR     +P   +E +     + R+D  ++DD+W      +++PY
Subjt:  RQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRNRR---FIRPDLKAEQQPKQETSRRKDMNDEDDNWN--SYQVDLPY

AT5G63300.2 Ribosomal protein S21 family protein1.1e-0738.13Show/hide
Query:  MAAAATSSLTKFFSSLSISKS------SPIHCESVSFNFQSRPKSKPARLAAA------RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFR
        MA  +  SL++  SSL  SK        PI   S      S+  S   ++  A       R A  S   +   F     YNV +   D E EEQ VN F+
Subjt:  MAAAATSSLTKFFSSLSISKS------SPIHCESVSFNFQSRPKSKPARLAAA------RRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFR

Query:  RQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRNR
        R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ R R
Subjt:  RQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCTGCAACTTCTTCTCTGACGAAGTTCTTCTCTTCTCTATCGATTTCGAAATCGTCACCAATACACTGCGAATCCGTCTCTTTCAACTTTCAGTCTCGTCC
GAAATCTAAACCGGCTCGGTTGGCTGCCGCCCGGCGCTCTGCTCCGTCGTCTTCGCCGGAATCTACCGCCGCGTTCTTAGCCGTAAGGAACTACAATGTTCTGATCGCCG
TGGATGATAAGGAGCATGAAGAACAGACGGTGAATCGGTTCAGGAGGCAGGTGTTGAGAGCTGGGATCTTGCAGGAGTGTAAGAGGAGAAGGTTTTTTGAAAACAGTCAG
GCGAAGAGGAAGAGGAAAGCTAGAGAAGCTGCTAAAAGGAATCGCAATAGAAGGTTCATAAGGCCTGACTTAAAAGCTGAGCAGCAGCCAAAACAGGAAACCAGTAGGAG
GAAGGATATGAATGATGAAGATGACAACTGGAACTCTTACCAAGTAGACCTTCCATACTGTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGCTGCAACTTCTTCTCTGACGAAGTTCTTCTCTTCTCTATCGATTTCGAAATCGTCACCAATACACTGCGAATCCGTCTCTTTCAACTTTCAGTCTCGTCC
GAAATCTAAACCGGCTCGGTTGGCTGCCGCCCGGCGCTCTGCTCCGTCGTCTTCGCCGGAATCTACCGCCGCGTTCTTAGCCGTAAGGAACTACAATGTTCTGATCGCCG
TGGATGATAAGGAGCATGAAGAACAGACGGTGAATCGGTTCAGGAGGCAGGTGTTGAGAGCTGGGATCTTGCAGGAGTGTAAGAGGAGAAGGTTTTTTGAAAACAGTCAG
GCGAAGAGGAAGAGGAAAGCTAGAGAAGCTGCTAAAAGGAATCGCAATAGAAGGTTCATAAGGCCTGACTTAAAAGCTGAGCAGCAGCCAAAACAGGAAACCAGTAGGAG
GAAGGATATGAATGATGAAGATGACAACTGGAACTCTTACCAAGTAGACCTTCCATACTGTTCATAG
Protein sequenceShow/hide protein sequence
MAAAATSSLTKFFSSLSISKSSPIHCESVSFNFQSRPKSKPARLAAARRSAPSSSPESTAAFLAVRNYNVLIAVDDKEHEEQTVNRFRRQVLRAGILQECKRRRFFENSQ
AKRKRKAREAAKRNRNRRFIRPDLKAEQQPKQETSRRKDMNDEDDNWNSYQVDLPYCS