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Sed0000117 (gene) of Chayote v1 genome

Gene IDSed0000117
OrganismSechium edule (Chayote v1)
DescriptionSm-like protein LSM2
Genome locationLG07:977836..980161
RNA-Seq ExpressionSed0000117
SyntenySed0000117
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0009628 - response to abiotic stimulus (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0000932 - P-body (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016654 - U6 snRNA-associated Sm-like protein LSm2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EPS69310.1 hypothetical protein M569_05456 [Genlisea aurea]3.4e-4597.85Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV+DQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

KAD4584478.1 hypothetical protein E3N88_22079 [Mikania micrantha]2.0e-45100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_004135926.1 sm-like protein LSM2 [Cucumis sativus]2.6e-4598.92Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_008458018.1 PREDICTED: sm-like protein LSM2 isoform X2 [Cucumis melo]2.0e-45100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_010038129.1 sm-like protein LSM2 [Eucalyptus grandis]4.5e-4598.92Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

TrEMBL top hitse value%identityAlignment
A0A0A0K9T1 Sm-like protein LSM21.3e-4598.92Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A1S3C840 Sm-like protein LSM29.7e-46100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5D2BJZ3 Sm-like protein LSM22.2e-4598.92Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5N6NC01 Sm domain-containing protein9.7e-46100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

S8CR98 Sm-like protein LSM21.7e-4597.85Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV+DQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

SwissProt top hitse value%identityAlignment
O35900 U6 snRNA-associated Sm-like protein LSm21.8e-3375.56Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D EKYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

P38203 U6 snRNA-associated Sm-like protein LSm24.4e-2766.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE
        MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D++KYPH+ SVRN FIRGS VRYV L  + VD  LL DATRRE
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE

Q1H595 Sm-like protein LSM21.6e-4593.55Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm24.2e-3065.93Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR
        MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V +++KYP+M+SV+NCFIRGSVVRYV LP + VD+E L D +R EAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR

Q9Y333 U6 snRNA-associated Sm-like protein LSm21.8e-3375.56Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D EKYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Arabidopsis top hitse value%identityAlignment
AT1G03330.1 Small nuclear ribonucleoprotein family protein1.1e-4693.55Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

AT3G07590.1 Small nuclear ribonucleoprotein family protein4.1e-0429.27Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL

AT3G07590.2 Small nuclear ribonucleoprotein family protein4.1e-0429.27Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL

AT3G59810.1 Small nuclear ribonucleoprotein family protein7.0e-0433.85Show/hide
Query:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYV
        + K + GR V V+L + +  RGTL  +D Y+NI +E T      +  +     + FIRG+ V Y+
Subjt:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYV

AT4G02840.1 Small nuclear ribonucleoprotein family protein4.1e-0429.27Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTTTTCTCTTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTTGAGTTGAAGAATGATCTAGCAATTAGAGGAACTTTGCACTCTGTAGATCAGTATCTCAA
TATCAAACTTGAAAACACGAGAGTTGTTGATCAAGAAAAATACCCTCACATGCTTTCAGTGAGAAACTGTTTTATCAGGGGCTCGGTGGTGAGATATGTTCAACTTCCAC
CAGATGGTGTTGATATTGAGTTGTTGCATGATGCCACGAGACGTGAGGCTCGTGGTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATTTTAAAAAAACCCTTAGGTTTTCAACACTATTCCTTTCTCCTTCGATAGCGAATTTAGGGTTTCTCTTTTCTCCCTAAAATCTTCTGCTTGCGATAGTTCGAGCTTCA
CCAGTCGCTGTTCATCAGATTCTCTGAAATCTCTACTGAAAAATGTTGTTTTTCTCTTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTTGAGTTGAAGAATGATCT
AGCAATTAGAGGAACTTTGCACTCTGTAGATCAGTATCTCAATATCAAACTTGAAAACACGAGAGTTGTTGATCAAGAAAAATACCCTCACATGCTTTCAGTGAGAAACT
GTTTTATCAGGGGCTCGGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATATTGAGTTGTTGCATGATGCCACGAGACGTGAGGCTCGTGGTGGTTAATGTCAG
TTAGTTTGGAAGTTTGTACGGAATCGCATGAAATCTGATTAGAGTGCACTCTTTAGTATAGTGCGAGACAATAGAAGCTTGAGCTTGTACTTTGTGATCGGATCGATACA
TTAGTTTCTCTTCAAGTATTTCTCGAGCTAAGAATCTAATGACATTTTATTCAGCAGCTTCATATGTCCCTGTTGCTATTTGCTTGTGCTGCACACACCCTCAAAAAATA
CAAATTTGGTTTCTATCTTTTAGAGAAAGATTAGTTCTATTGCTCAAGATATTCTAGATCTTTTGTTTTTCTTCCTCCTTCTGAGAGTAGTTATACCGAATGTTAAAATT
AATGCAATTAGT
Protein sequenceShow/hide protein sequence
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG