CuGenDBv2

Gene ID	Sed0000118
Organism	Sechium edule (Chayote v1)
Description	diphthamide biosynthesis protein 3-like
Genome location	LG10:37154570..37157195
RNA-Seq Expression	Sed0000118
Synteny	Sed0000118
Gene Ontology terms	GO:0002098 - tRNA wobble uridine modification (biological process) GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR007872 - DPH-type metal-binding domain IPR036671 - DPH-type metal-binding domain superfamily IPR044248 - Diphthamide biosynthesis protein 3/4-like

Homology

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GenBank top hits

e value

%identity

Alignment

OVA13807.1 zinc finger protein [Macleaya cordata]

6.3e-38

87.06

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDMEWNEELQ+FTYPCPCGDLFQITKE+LK+GEEIARCPSCSLYITVIYNMEDF GDSD+N  K LEPSKQ P+ VA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

XP_008454889.1 PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo]

2.2e-38

90.59

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDM+WNEELQ+FTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF  DS+Q  NKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

XP_022136247.1 diphthamide biosynthesis protein 3-like [Momordica charantia]

1.3e-38

88.24

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDMEWN+ELQ++TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDF GDSDQ  NKG++PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

XP_022972367.1 diphthamide biosynthesis protein 3-like [Cucurbita maxima]

2.6e-39

91.76

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDMEWNEELQ+FTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF GDSD   NKGL+PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

XP_038887330.1 diphthamide biosynthesis protein 3-like [Benincasa hispida]

1.2e-39

92.94

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDMEWNEELQ+FTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF GDS+Q  NKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BZL5 diphthamide biosynthesis protein 3-like

1.1e-38

90.59

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDM+WNEELQ+FTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF  DS+Q  NKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

A0A200QTM0 Zinc finger protein

3.1e-38

87.06

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDMEWNEELQ+FTYPCPCGDLFQITKE+LK+GEEIARCPSCSLYITVIYNMEDF GDSD+N  K LEPSKQ P+ VA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

A0A5A7SJN1 Diphthamide biosynthesis protein 3-like

1.1e-38

90.59

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDM+WNEELQ+FTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF  DS+Q  NKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

A0A6J1C519 diphthamide biosynthesis protein 3-like

6.2e-39

88.24

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDMEWN+ELQ++TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDF GDSDQ  NKG++PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

A0A6J1I4L9 diphthamide biosynthesis protein 3-like

1.2e-39

91.76

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDMEWNEELQ+FTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF GDSD   NKGL+PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

SwissProt top hits

e value

%identity

Alignment

Q21102 DPH3 homolog

4.9e-17

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Query:  YDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF
        +D+VEIED E++EE   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF
Subjt:  YDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF

Q4P8G2 Diphthamide biosynthesis protein 3

2.9e-17

53.73

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Query:  YDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQ-GDSDQ
        YD++E+EDM +++E   F YPCPCGD F+IT++ LK  E++ARCPSCSL I V+++  DF+ GD D+
Subjt:  YDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQ-GDSDQ

Q6VUC1 DPH3 homolog

4.9e-17

58.33

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Query:  YDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF
        +D+VEIED +++E+ +++ YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Subjt:  YDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF

Q74Z32 Diphthamide biosynthesis protein 3

2.2e-17

55.41

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Query:  YDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEP
        YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+Y + D Q   D+    G+EP
Subjt:  YDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEP

Q9VGQ9 DPH3 homolog

3.4e-18

59.09

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Query:  YDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQ
        +D+VEIED E++EE + + YPCPCGD FQI+KE+L  GEE+A CPSCSL I VIY+ E F+ + D+
Subjt:  YDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQ

Arabidopsis top hits

e value

%identity

Alignment

AT2G15910.1 CSL zinc finger domain-containing protein

3.5e-34

76.83

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPI
        MSYDDVEIEDMEWNEE+Q++TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDFQ D+ +N     EP  + P+
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPI

AT2G15910.2 CSL zinc finger domain-containing protein

2.4e-35

76.47

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Query:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA
        MSYDDVEIEDMEWNEE+Q++TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDFQ D+ +N     EP  + P+ VA
Subjt:  MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

Sequences

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CDS sequence

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ATGTCGTACGACGACGTTGAGATCGAAGACATGGAATGGAACGAGGAGCTGCAGTCGTTCACGTATCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCT
TAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACCGTCATCTACAACATGGAAGATTTTCAAGGAGATTCTGATCAGAACCGTAACAAAGGAC
TCGAGCCCTCTAAGCAACCGCCCATCGTCGTCGCTTAA

mRNA sequence

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AAGAAAGCCTAATTTTGACGCAGTCTCGAAAATCCTAAACCCTAGCCCTTCCGCAATCCCACCACCAAAATCGCCGGTTGCAGACTTGCCGTCGCCGTCGTCGTCGCCGC
CGAGCCGGTCGAATCCACCGGAGAAACGATGTCGTACGACGACGTTGAGATCGAAGACATGGAATGGAACGAGGAGCTGCAGTCGTTCACGTATCCATGCCCCTGCGGCG
ACTTGTTCCAGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACCGTCATCTACAACATGGAAGATTTTCAAGGA
GATTCTGATCAGAACCGTAACAAAGGACTCGAGCCCTCTAAGCAACCGCCCATCGTCGTCGCTTAAGAATTCAGAGAGCTCGATTATGAATCATGGTGTCATCACGGCAG
CAGATGAAATTTTGTCAGCCTGAGATGTTTGTGTTGCATGTGCAAAATTACATTAAAGTACTATTTTTGTTCCATCAAAAGTAATTTAGAGTCTTGATCTTTTTTTTGAC
ATGCTATCTTTGGTCGAACCCTACCCCTATCTCCATGATGTGATAAAGGGAGAACTTTTAGACATAAGAATTAAACCCTCGTTTGATAACCATTTTGTCGTAGGTTTTTC
CTTACGTGAAAATCTACATCTTACCTATATTTTAAGAAACCATACCAAAATGTGGAAACAAAAAAAAGCTTCCAAAGTTTGTTTTTGTCTTTGAAATTTTGTTAGCATTC
ATATACTTTCTTAAGAAAGATGGAGGAAATTTGAGTAAAAATAAGATTAAATTTCAAAAGCAAAATGGTTATTAGACGGGGTTTAAGATATGGTAACCTTAACTATATAA
TTTAATCTTTTGATTGAAATATTTTAATAGTTTTTCTGTTTTTATTTGTCTTTCTTAGCCCTTCTTGTTTGTGTATGAAAACTTCATGATACTAACTTGTTTAGTTATTA
AGATTGTAAGATGGATTGATCCATGTGTTTGAACTCATCGATTTTTGAAGATCGATGGGAGGAGATGTTGAAGAC

Protein sequence

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MSYDDVEIEDMEWNEELQSFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFQGDSDQNRNKGLEPSKQPPIVVA

Sed0000118 (gene) of Chayote v1 genome