CuGenDBv2

Gene ID	Sed0000176
Organism	Sechium edule (Chayote v1)
Description	Hydroxyproline-rich glycoprotein family protein
Genome location	LG14:19153808..19154486
RNA-Seq Expression	Sed0000176
Synteny	Sed0000176
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR037699 - Uncharacterized protein At5g65660-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022133072.1 uncharacterized protein At5g65660 [Momordica charantia]

1.1e-32

57.89

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Query:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKF----------------SSPSP--PKSIDLDNDRGERLTVVMPGDLVPRFIAMP
        MESPD   P++D  RPSLGFPLGTALL+LVIF+LSGIFSC YHWDK                 SSPS   P S+DL+ ++ + L+V+MPGD +P+FIAMP
Subjt:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKF----------------SSPSP--PKSIDLDNDRGERLTVVMPGDLVPRFIAMP

Query:  CPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY
        CP  PPRPE+++V+++KPP    KPPRIAVPFY
Subjt:  CPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY

XP_022949671.1 uncharacterized protein At5g65660-like [Cucurbita moschata]

1.2e-31

59.38

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Query:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSPSP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIA
        MESPD   P++D  RPSL FPLGTALL+LVIF+LSGIFSC YHWDK          F+  SP    P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  
Subjt:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSPSP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIA

Query:  PPRPEIVEVRIQKPPPPPSKPPRIAVPF
        PPRPE+VEV+++KPP    KPPRIAVPF
Subjt:  PPRPEIVEVRIQKPPPPPSKPPRIAVPF

XP_022979056.1 uncharacterized protein At5g65660-like [Cucurbita maxima]

8.3e-33

60.47

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Query:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSPSP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIA
        MESPD   P++D  RPSL FPLGTALL+LVIF+LSGIFSC YHWDK          F+  SP    P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  
Subjt:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSPSP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIA

Query:  PPRPEIVEVRIQKPPPPPSKPPRIAVPFY
        PPRPE+VEV+++KPP PP  PPRIAVPFY
Subjt:  PPRPEIVEVRIQKPPPPPSKPPRIAVPFY

XP_023518276.1 uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo]

4.1e-32

55.88

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Query:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKF-------------------SSPSP--PKSIDLDNDRGERLTVVMPGDLVPRFI
        ME+PD   P++D  RPSLGFPLGTALL+LVIF+LSGIFSC YHWDK                    SSPS   P ++DL+ ++ E L+VVMPGD +P+FI
Subjt:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKF-------------------SSPSP--PKSIDLDNDRGERLTVVMPGDLVPRFI

Query:  AMPCPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY
        AMPCP  PPRPE+++V+++KPP    KPPRIA+PFY
Subjt:  AMPCPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY

XP_023543383.1 uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo]

1.4e-32

59.69

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Query:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSPSP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIA
        MESPD   P++D  RPSL FPLGTALL+LVIF+LSGIFSC YHWDK          F+  SP    P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  
Subjt:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSPSP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIA

Query:  PPRPEIVEVRIQKPPPPPSKPPRIAVPFY
        PPRPE+VEV+++KPP    KPPRIAVPFY
Subjt:  PPRPEIVEVRIQKPPPPPSKPPRIAVPFY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BVL2 uncharacterized protein At5g65660

5.2e-33

57.89

Show/hide

Query:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKF----------------SSPSP--PKSIDLDNDRGERLTVVMPGDLVPRFIAMP
        MESPD   P++D  RPSLGFPLGTALL+LVIF+LSGIFSC YHWDK                 SSPS   P S+DL+ ++ + L+V+MPGD +P+FIAMP
Subjt:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKF----------------SSPSP--PKSIDLDNDRGERLTVVMPGDLVPRFIAMP

Query:  CPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY
        CP  PPRPE+++V+++KPP    KPPRIAVPFY
Subjt:  CPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY

A0A6J1GCM8 uncharacterized protein At5g65660-like

5.8e-32

59.38

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Query:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSPSP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIA
        MESPD   P++D  RPSL FPLGTALL+LVIF+LSGIFSC YHWDK          F+  SP    P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  
Subjt:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSPSP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIA

Query:  PPRPEIVEVRIQKPPPPPSKPPRIAVPF
        PPRPE+VEV+++KPP    KPPRIAVPF
Subjt:  PPRPEIVEVRIQKPPPPPSKPPRIAVPF

A0A6J1HHX0 uncharacterized protein At5g65660-like

9.9e-32

55.15

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Query:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS----------------PSPPK-----SIDLDNDRGERLTVVMPGDLVPRFI
        ME+PD   P++D  RPSLGFPLGTALL+LVIF+LSGIFSC YHWDK  S                PS P      ++DL+ ++ E L+VVMPGD +P+FI
Subjt:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS----------------PSPPK-----SIDLDNDRGERLTVVMPGDLVPRFI

Query:  AMPCPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY
        AMPCP  PPRPE++ V+++KPP    KPPRIA+PFY
Subjt:  AMPCPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY

A0A6J1IPP8 uncharacterized protein At5g65660-like

4.0e-33

60.47

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Query:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSPSP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIA
        MESPD   P++D  RPSL FPLGTALL+LVIF+LSGIFSC YHWDK          F+  SP    P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  
Subjt:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSPSP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIA

Query:  PPRPEIVEVRIQKPPPPPSKPPRIAVPFY
        PPRPE+VEV+++KPP PP  PPRIAVPFY
Subjt:  PPRPEIVEVRIQKPPPPPSKPPRIAVPFY

A0A6J1KQE2 uncharacterized protein At5g65660-like

2.2e-31

55.15

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Query:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS----------------PSPPK-----SIDLDNDRGERLTVVMPGDLVPRFI
        ME+PD   P++D  RPSLGFPLGTALL+LVIF+LSGIFSC YHWDK  S                PS P      ++DL+ ++ E L+VVMPGD +P+FI
Subjt:  MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS----------------PSPPK-----SIDLDNDRGERLTVVMPGDLVPRFI

Query:  AMPCPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY
        AMPCP  PPRPE+++V ++KPP    KPPRIA+PFY
Subjt:  AMPCPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY

SwissProt top hits

e value

%identity

Alignment

Q9LSK9 Uncharacterized protein At5g65660

3.9e-25

49.24

Show/hide

Query:  DLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS--------------------PSPPKSIDLDNDRGERLTVVMPGDLVPRFIAMPCP
        D   P+ D  RPSLGFPLGTALL+++IFSLSGIFSC YHWDK  S                    P PP   ++   +   + V+MPGD  P+FIA+PCP
Subjt:  DLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS--------------------PSPPKSIDLDNDRGERLTVVMPGDLVPRFIAMPCP

Query:  IAPPRPEIVEVRIQKPP-PPPSKPPRIAVPFY
         APPRPE + V +Q PP  PP KP R  VP Y
Subjt:  IAPPRPEIVEVRIQKPP-PPPSKPPRIAVPFY

Arabidopsis top hits

e value

%identity

Alignment

AT5G65660.1 hydroxyproline-rich glycoprotein family protein

2.7e-26

49.24

Show/hide

Query:  DLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS--------------------PSPPKSIDLDNDRGERLTVVMPGDLVPRFIAMPCP
        D   P+ D  RPSLGFPLGTALL+++IFSLSGIFSC YHWDK  S                    P PP   ++   +   + V+MPGD  P+FIA+PCP
Subjt:  DLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS--------------------PSPPKSIDLDNDRGERLTVVMPGDLVPRFIAMPCP

Query:  IAPPRPEIVEVRIQKPP-PPPSKPPRIAVPFY
         APPRPE + V +Q PP  PP KP R  VP Y
Subjt:  IAPPRPEIVEVRIQKPP-PPPSKPPRIAVPFY

Sequences

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CDS sequence

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ATGGAGTCTCCCGACTTGCCGGCGCCGTACTCCGACGAGTGCCGACCCTCCCTAGGGTTCCCGCTGGGCACCGCTCTGCTCATTCTGGTCATCTTCTCCCTGAGCGGAAT
CTTCTCCTGCTTTTACCACTGGGACAAATTCTCTTCCCCCTCCCCTCCCAAATCCATCGATTTGGATAACGATCGGGGAGAGAGGTTGACGGTGGTCATGCCTGGGGATT
TGGTTCCCAGATTTATTGCGATGCCGTGCCCTATAGCGCCGCCGCGGCCGGAGATCGTTGAGGTTAGGATCCAGAAGCCGCCGCCGCCGCCGTCCAAGCCGCCGCGAATT
GCCGTTCCGTTCTATTAG

mRNA sequence

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CCACTCTTCCGTCATCGGAGTTTCCGCCATTTCCGTTTGTCCCAACACCACATGACACACCCGAAATGGAGTCTCCCGACTTGCCGGCGCCGTACTCCGACGAGTGCCGA
CCCTCCCTAGGGTTCCCGCTGGGCACCGCTCTGCTCATTCTGGTCATCTTCTCCCTGAGCGGAATCTTCTCCTGCTTTTACCACTGGGACAAATTCTCTTCCCCCTCCCC
TCCCAAATCCATCGATTTGGATAACGATCGGGGAGAGAGGTTGACGGTGGTCATGCCTGGGGATTTGGTTCCCAGATTTATTGCGATGCCGTGCCCTATAGCGCCGCCGC
GGCCGGAGATCGTTGAGGTTAGGATCCAGAAGCCGCCGCCGCCGCCGTCCAAGCCGCCGCGAATTGCCGTTCCGTTCTATTAGGGTTTCTGATTCGATTCTGTGTGTGTT
CCTTTCTATGAATGCCTTTTCGATTTCGATTTCTGTGTTTTACGAGCGATTTTGTTTCTGCACAGTTAACAAAACTTGCAATGGAGGAACAAAAACGTATGAATTGTGAT
TTTTAACCAGTTTTATTCTCCATTCATGTTTCCGGCATTAATATGTTTTTTT

Protein sequence

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MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSSPSPPKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPPPPPSKPPRI
AVPFY

Sed0000176 (gene) of Chayote v1 genome