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Sed0000209 (gene) of Chayote v1 genome

Gene IDSed0000209
OrganismSechium edule (Chayote v1)
DescriptionTranscription elongation factor 1 homolog
Genome locationLG04:30492515..30494866
RNA-Seq ExpressionSed0000209
SyntenySed0000209
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3442455.1 hypothetical protein FNV43_RR16371 [Rhamnella rubrinervis]2.7e-3994.19Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FSMAITALTE IDVY+EWIDECERVNN EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD

XP_011082718.1 transcription elongation factor 1 homolog [Sesamum indicum]2.1e-3990.8Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDD
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FS  +TALTE ID+Y+EWIDECERVNNPEDDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDD

XP_022142747.1 transcription elongation factor 1 homolog [Momordica charantia]2.1e-3989.89Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQEGFS  ITALTE ID+Y+EWIDECERVNN E+DD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA

XP_022922476.1 transcription elongation factor 1 homolog [Cucurbita moschata]1.6e-3987.64Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA
        MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FS  +TALTE ID+Y+EWIDECERVNNPE+DDGA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA

XP_022943265.1 transcription elongation factor 1 homolog [Cucurbita moschata]1.2e-3991.86Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQEGFS +ITAL+E ID+Y+EWIDECERVNNPEDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD

TrEMBL top hitse value%identityAlignment
A0A6I9TIA1 Transcription elongation factor 1 homolog9.9e-4090.8Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDD
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FS  +TALTE ID+Y+EWIDECERVNNPEDDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDD

A0A6J1E485 Transcription elongation factor 1 homolog7.6e-4087.64Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA
        MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FS  +TALTE ID+Y+EWIDECERVNNPE+DDGA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA

A0A6J1FXL7 Transcription elongation factor 1 homolog5.8e-4091.86Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQEGFS +ITAL+E ID+Y+EWIDECERVNNPEDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD

A0A6J1J7P5 Transcription elongation factor 1 homolog5.8e-4091.86Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQEGFS +ITAL+E ID+Y+EWIDECERVNNPEDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD

A0A6J1JCJ5 Transcription elongation factor 1 homolog7.6e-4087.64Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA
        MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FS  +TALTE ID+Y+EWIDECERVNNPE+DDGA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog1.2e-1851.22Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F   IT L+E +DVY++WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVN

P60002 Transcription elongation factor 1 homolog1.2e-1851.22Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F   IT L+E +DVY++WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVN

P60003 Transcription elongation factor 1 homolog1.2e-1851.22Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F   IT L+E +DVY++WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVN

Q8LEF3 Transcription elongation factor 1 homolog3.8e-3680.23Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+E FS  ITALTEAID+Y+EWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD

Q8LHP0 Transcription elongation factor 1 homolog5.1e-4186.52Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE FS  + ALTE ID+Y+EWIDECERVNN EDDDGA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein2.7e-3780.23Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+E FS  ITALTEAID+Y+EWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGACAAGCTTGATACTGTTTTTAGCTGCCCTTTCTGCAATCATGGGACCAGTGTGGAATGTCG
CATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTGCGATTTGCCAAGAAGGCTTTAGCATGGCCATTACAGCCTTGACCGAGGCAATTGACGTATATACCGAATGGA
TCGATGAATGCGAGCGGGTCAACAACCCTGAAGACGATGACGGTGCCTAA
mRNA sequenceShow/hide mRNA sequence
CTTCTATAAATACCAACCCTTCCTTCTATTTTTTCTCATTCATCAATTCGACCAGCGAGACGATTACAACAGCGAACGATAAATCTCTCCCAATTCGATCGGCAATCAGT
TTTAACACAAGGAATGGGAAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGACAAGCTTGATACTGTTTTTAGCTGCCCTTTCTGCAATCATGGGACCA
GTGTGGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTGCGATTTGCCAAGAAGGCTTTAGCATGGCCATTACAGCCTTGACCGAGGCAATTGACGTA
TATACCGAATGGATCGATGAATGCGAGCGGGTCAACAACCCTGAAGACGATGACGGTGCCTAAGTTTGATGCTTGCGATTTCGTTACGAGAAGAATCTGGCTGGTTGGAA
CTTGGAAGTTCCCTTTATGAATCTAAATTAAGAGAGGGGGTCTATTTGTAGGTGTAGCACTCTTACCCTCGTAGCAATACAGACGAGCATGCATGTACAGTAGTACGTTG
TAACGGCTTGCACTTTGACTTAATTGCGGATTTTACGTACCCATCACTTTTATTCCTGACTTTTGAATCACTAATCTTTTGGACATGAGAAGTTGTATGTTGATGCCATT
TTTTTTAAGTTTGTTTACTGTTGGATCATGAATCCCATTCCTTGCTGATTGAAGATGTTTTTTATTTTGTTTTTTGGGTTAGGTGGTTGAATTTTAGGCTTTCTAAT
Protein sequenceShow/hide protein sequence
MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA