; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000236 (gene) of Chayote v1 genome

Gene IDSed0000236
OrganismSechium edule (Chayote v1)
DescriptionNuclear polyadenylated RNA-binding protein 3-like
Genome locationLG04:47250746..47252116
RNA-Seq ExpressionSed0000236
SyntenySed0000236
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033784.1 nuclear polyadenylated RNA-binding protein 3-like [Cucumis melo var. makuwa]9.5e-6675.77Show/hide
Query:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDV
        MEA+SG+SSS  S++EFVF+DDFEYEFVE++ERLSNWELLDA DAD EM GNGG+++ GEN SVD    +DLRE MISPV+AVP+S+VE+RI   L  D 
Subjt:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDV

Query:  YLLQNQEEIGFAYGYDEAEEE-EVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY
          L NQ E GFAYGYD+AEEE EVD   DD+ DE DLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTK GCVRGKHGLGLKHSY
Subjt:  YLLQNQEEIGFAYGYDEAEEE-EVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY

XP_008448068.1 PREDICTED: uncharacterized protein LOC103490356 [Cucumis melo]3.6e-6573.5Show/hide
Query:  MEALSG------ASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGD
        MEA+SG      +SSSS S++EFVF+DDFEYEFVE++ERLSNWELLDA DAD EM GNGG+++ GEN SVD    +DLRE MISPV+AVP+S+VE+RI  
Subjt:  MEALSG------ASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGD

Query:  RLGIDVYLLQNQEEIGFAYGYDEAEEE-EVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY
         L  D   L NQ E GFAYGYD+AEEE EVD   D++ DE DLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTK GCVRGKHGLGLKHSY
Subjt:  RLGIDVYLLQNQEEIGFAYGYDEAEEE-EVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY

XP_011658549.2 uncharacterized protein LOC101212092 [Cucumis sativus]5.4e-6976.17Show/hide
Query:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDV
        MEA+SG+SSSS S++EFVF+DDFEYEFVE++ERLSNWELLDA DAD EM GNGG+++GG N SVD    +DLRE MISPV+AVP+S+VE+RI   L  D 
Subjt:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDV

Query:  YLLQNQEEIGFAYGYDEAEEEEVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY
        Y L NQ E GFAYGY++AEEE+   +VDDD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTK GCVRGKHGLGLKHSY
Subjt:  YLLQNQEEIGFAYGYDEAEEEEVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY

XP_022969470.1 uncharacterized protein LOC111468462 [Cucurbita maxima]5.6e-6674.37Show/hide
Query:  MEALSGA---SSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLG
        MEA+SGA   SSSS S++EF F+DDFEYEFVE+VERLSNWE L+ASDAD EM GNGG+ E G+N  V  R  EDL E MISPVV VP+S+ E+RI D L 
Subjt:  MEALSGA---SSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLG

Query:  IDVYLLQNQEEIGFAYGYDEAEEEEV---DGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY
         DVY LQN  E GFAYGY++AEE+E    DGD DDD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTK GCVRGKHGLGLKHSY
Subjt:  IDVYLLQNQEEIGFAYGYDEAEEEEV---DGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY

XP_023553634.1 histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo]1.5e-6673.87Show/hide
Query:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDV
        MEA+SGASSSS S++EF F+DDFEYEFVE+VERLSNWE L+ASDAD EM GNGG+ E G+N  V  R  EDLRE +ISPVV VP+S+ E+RI D L  DV
Subjt:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDV

Query:  YLLQNQEEIGFAYGYDEAEEEEV------DGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY
        Y LQN  E GFAYGY++AEE+E       D D DDD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTK GCVRGKHGLGLKHSY
Subjt:  YLLQNQEEIGFAYGYDEAEEEEV------DGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY

TrEMBL top hitse value%identityAlignment
A0A0A0K4F3 Uncharacterized protein2.6e-6976.17Show/hide
Query:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDV
        MEA+SG+SSSS S++EFVF+DDFEYEFVE++ERLSNWELLDA DAD EM GNGG+++GG N SVD    +DLRE MISPV+AVP+S+VE+RI   L  D 
Subjt:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDV

Query:  YLLQNQEEIGFAYGYDEAEEEEVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY
        Y L NQ E GFAYGY++AEEE+   +VDDD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTK GCVRGKHGLGLKHSY
Subjt:  YLLQNQEEIGFAYGYDEAEEEEVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY

A0A1S3BJG2 uncharacterized protein LOC1034903561.8e-6573.5Show/hide
Query:  MEALSG------ASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGD
        MEA+SG      +SSSS S++EFVF+DDFEYEFVE++ERLSNWELLDA DAD EM GNGG+++ GEN SVD    +DLRE MISPV+AVP+S+VE+RI  
Subjt:  MEALSG------ASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGD

Query:  RLGIDVYLLQNQEEIGFAYGYDEAEEE-EVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY
         L  D   L NQ E GFAYGYD+AEEE EVD   D++ DE DLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTK GCVRGKHGLGLKHSY
Subjt:  RLGIDVYLLQNQEEIGFAYGYDEAEEE-EVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY

A0A5A7SRG7 Nuclear polyadenylated RNA-binding protein 3-like4.6e-6675.77Show/hide
Query:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDV
        MEA+SG+SSS  S++EFVF+DDFEYEFVE++ERLSNWELLDA DAD EM GNGG+++ GEN SVD    +DLRE MISPV+AVP+S+VE+RI   L  D 
Subjt:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDV

Query:  YLLQNQEEIGFAYGYDEAEEE-EVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY
          L NQ E GFAYGYD+AEEE EVD   DD+ DE DLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTK GCVRGKHGLGLKHSY
Subjt:  YLLQNQEEIGFAYGYDEAEEE-EVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY

A0A6J1F1D0 NAD-dependent protein deacetylase HST1-like4.8e-6372.41Show/hide
Query:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGG-------DDEGGENRSVDGRNLEDLRERMISPVVAVPV-SVVEERI
        MEA SGA+SSS S++EFVF DD EYEFVEEVERLSNWELLDASDADFE+ GNG        ++E GE+ SVD R  +DLR +    VVA+P+ S+VEERI
Subjt:  MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGG-------DDEGGENRSVDGRNLEDLRERMISPVVAVPV-SVVEERI

Query:  GDRLGIDVYLLQNQEEIGFAYGYDEAEEEEVDGDV---DDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGL
         D    DVYLLQNQ E GFAYG ++ EE+E D DV   DDDGDE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTK GCVRGKHGLGL
Subjt:  GDRLGIDVYLLQNQEEIGFAYGYDEAEEEEVDGDV---DDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGL

Query:  KHS
        KHS
Subjt:  KHS

A0A6J1I004 uncharacterized protein LOC1114684622.7e-6674.37Show/hide
Query:  MEALSGA---SSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLG
        MEA+SGA   SSSS S++EF F+DDFEYEFVE+VERLSNWE L+ASDAD EM GNGG+ E G+N  V  R  EDL E MISPVV VP+S+ E+RI D L 
Subjt:  MEALSGA---SSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLG

Query:  IDVYLLQNQEEIGFAYGYDEAEEEEV---DGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY
         DVY LQN  E GFAYGY++AEE+E    DGD DDD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTK GCVRGKHGLGLKHSY
Subjt:  IDVYLLQNQEEIGFAYGYDEAEEEEV---DGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G34630.1 unknown protein2.1e-1536.22Show/hide
Query:  EEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDL----RERMISP-VVAVPVSVVEERIGDRLGIDVYLLQNQEEIGFAYGYDEAEEEEV
        +EV+ L  WE+++ SD +F            ++ SVD  + +D+        ++P V++ P  ++    G  L +D   L   +++G     DE +E ++
Subjt:  EEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDL----RERMISP-VVAVPVSVVEERIGDRLGIDVYLLQNQEEIGFAYGYDEAEEEEV

Query:  D---------------------GD-VDDDGDES-------DLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLK
                              GD V+DDG+E        DLD+ELVP SVS K+GRQRMRKLGKR   K+Y SK SPFL  K G VRGKHGLG+K
Subjt:  D---------------------GD-VDDDGDES-------DLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCCTATCTGGAGCATCTTCTTCATCTCCATCAGCAATTGAATTCGTGTTCTTCGATGATTTTGAGTACGAATTCGTTGAAGAAGTCGAACGCCTTTCGAATTG
GGAGCTGCTCGATGCTTCAGATGCCGATTTCGAAATGTACGGTAATGGAGGCGACGATGAAGGAGGGGAAAATCGCAGCGTTGACGGCCGAAATCTTGAAGATCTTCGAG
AGCGGATGATTTCTCCTGTTGTAGCGGTGCCGGTTTCTGTTGTTGAGGAACGGATCGGCGATCGCTTAGGTATTGATGTTTATTTGCTTCAGAATCAGGAGGAAATCGGC
TTCGCGTACGGTTACGACGAGGCGGAGGAGGAGGAAGTCGACGGCGATGTTGACGATGATGGCGACGAGTCCGATCTGGACGACGAACTCGTTCCGTGGTCGGTCAGTGA
CAAACTCGGACGGCAAAGGATGAGGAAATTAGGTAAAAGAGGATTTACGAAGATGTATAATTCCAAGAGATCGCCGTTTTTGTTCACTAAGGCTGGATGTGTTCGTGGAA
AACACGGACTCGGCTTGAAGCACAGTTATTAG
mRNA sequenceShow/hide mRNA sequence
AAGAAAAACAACCAGCAATCATCGAAATCGAATCAATTTCGTCGAGAGAAAAATTCAGATCGACCATGGAAGCCCTATCTGGAGCATCTTCTTCATCTCCATCAGCAATT
GAATTCGTGTTCTTCGATGATTTTGAGTACGAATTCGTTGAAGAAGTCGAACGCCTTTCGAATTGGGAGCTGCTCGATGCTTCAGATGCCGATTTCGAAATGTACGGTAA
TGGAGGCGACGATGAAGGAGGGGAAAATCGCAGCGTTGACGGCCGAAATCTTGAAGATCTTCGAGAGCGGATGATTTCTCCTGTTGTAGCGGTGCCGGTTTCTGTTGTTG
AGGAACGGATCGGCGATCGCTTAGGTATTGATGTTTATTTGCTTCAGAATCAGGAGGAAATCGGCTTCGCGTACGGTTACGACGAGGCGGAGGAGGAGGAAGTCGACGGC
GATGTTGACGATGATGGCGACGAGTCCGATCTGGACGACGAACTCGTTCCGTGGTCGGTCAGTGACAAACTCGGACGGCAAAGGATGAGGAAATTAGGTAAAAGAGGATT
TACGAAGATGTATAATTCCAAGAGATCGCCGTTTTTGTTCACTAAGGCTGGATGTGTTCGTGGAAAACACGGACTCGGCTTGAAGCACAGTTATTAGATCAAGAACAGCT
TCTCTGCTCGATCAAGTGCTTGAAAAAGGTAACCGAATCTAGTTCCAATTTGGCTTAATTAGAAGTAAATAAATGTAAGACAAAGCAAAATTAGTAGTTGCGTTTATTGT
AAGTAGAAGTAACTCGTTAATCTGTAAATCGAATTTGCTGGATTGGTTTCTGTAGATTCTCAAGGCTCGGATGGATTAACATGAACACTAACTCGTTTATGATCATCTTT
TGTTGATTAATCATCAATTTGTGTCCACAAAATTGATATGGATATGCTTTGTTGGTTAGCTGTTTGGTTGTTTTGTTTGTGGTTCATGTAATTTGTATAAGAAAATCTGG
AATTTGGGCCACACCATCTGAATGATTGACACTTATTTGTATCACTTGTCGAGATTTTTCTAAGTGAAAGCCAAGCGTCCAGTCTAAACTTTTCTTTGTTTTTTATTTCT
TGTTTTTTAGTTCAGCTTCAAGAACACATTAGAAACTTTTTGGATTTGTGTTTTTATTCTCACCTTGGCAGAGAACTTCAAAAACTTAAAAACATTGTATAAGATGTGAT
GGTAGATCATTTAATTCTTTGTGATTAGTTCAGATTAGCTCAATTGTCTGAATCTACTACTCCTTAATATTGTTGTATTAAAAAAAAAGGAACCCTTTGTGATTAAGGAC
TTAGGGGAGAAAATATATTAAGTATATATATTAAAGTCTTATAGATTAAAT
Protein sequenceShow/hide protein sequence
MEALSGASSSSPSAIEFVFFDDFEYEFVEEVERLSNWELLDASDADFEMYGNGGDDEGGENRSVDGRNLEDLRERMISPVVAVPVSVVEERIGDRLGIDVYLLQNQEEIG
FAYGYDEAEEEEVDGDVDDDGDESDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKAGCVRGKHGLGLKHSY