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Sed0000276 (gene) of Chayote v1 genome

Gene IDSed0000276
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase RNF181-like
Genome locationLG06:40367051..40367680
RNA-Seq ExpressionSed0000276
SyntenySed0000276
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571005.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1433.8Show/hide
Query:  EQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREI---TRAVRETAG
        EQ    ++++++ Y RL+ G      + QI+ ET      P P   ++ PLP +    DP   +I +A +L SL+I A ASE+I  +I   T  + E   
Subjt:  EQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREI---TRAVRETAG

Query:  ERRLCVVAEVDGVELS--WR------------RVE-REVVEQ--------DQDQDRTDENDEKSEI--CSICLDELNNGKWDEIDVGCGHVFHDFCIYNW
        +  + VVA VD V  S  WR             VE REVVE+          ++   +E +E+ ++  CSICLDE+     + I   CGHV+H+ CI+ W
Subjt:  ERRLCVVAEVDGVELS--WR------------RVE-REVVEQ--------DQDQDRTDENDEKSEI--CSICLDELNNGKWDEIDVGCGHVFHDFCIYNW

Query:  LIHNTSCPLCRAPLEL
        L ++ SCPLCR    L
Subjt:  LIHNTSCPLCRAPLEL

KAG6595650.1 hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia]3.7e-1532.88Show/hide
Query:  SVVSGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEA-DPAQFEIDLARLLSSLHICATASEMIVREITRAVRE
        S  SGEQP Q + L+L+ + R +   P        L   T+ L +  P     +  P+ + E  DP   ++ +A+LLS L++ +   E+I   I      
Subjt:  SVVSGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEA-DPAQFEIDLARLLSSLHICATASEMIVREITRAVRE

Query:  TAG---ERRLCVVAEVDGVEL-SWRR----------------VEREVVEQDQD-QDRTDENDEKSEICSICLDELN---NGKW------DEIDVGCGHVF
         AG   E     V E+D + L +W                   E  ++E+ +   ++ +EN E+   CSICL+ELN   NGK       + I + CGHV+
Subjt:  TAG---ERRLCVVAEVDGVEL-SWRR----------------VEREVVEQDQD-QDRTDENDEKSEICSICLDELN---NGKW------DEIDVGCGHVF

Query:  HDFCIYNWLIHNTSCPLCRAPL
        H+ CI+NWL HN+SCPLCRAPL
Subjt:  HDFCIYNWLIHNTSCPLCRAPL

XP_022151640.1 E3 ubiquitin-protein ligase RNF181-like [Momordica charantia]4.9e-1534.12Show/hide
Query:  HTHSVVSGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITRAV
        H   V SG+QP+Q + +RL+  +R++   P+      IL+ET++     TP    V PLP+          E  + +LL SL +   A E+I R+I   V
Subjt:  HTHSVVSGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITRAV

Query:  RETAG----ERRLCVVAEVDGVELSWRRVEREVVEQDQ------------DQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHN
         E AG    +  L VVA VD +E      E  +V ++              +++ +E  E  + CS+CL+E+N G  + I + CGHV+H+ CI +WL  N
Subjt:  RETAG----ERRLCVVAEVDGVELSWRRVEREVVEQDQ------------DQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHN

Query:  TSCPLCRAPLE
         SCPLCR  LE
Subjt:  TSCPLCRAPLE

XP_022985641.1 RING-H2 finger protein ATL16-like [Cucurbita maxima]6.3e-1533.95Show/hide
Query:  EQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREI---TRAVRETAG
        EQ    ++++++ Y RL+ G      + QI+ ET      P P   ++ PLP +    DP   +I +A +L SL+I A ASE+I  +I   T  + E   
Subjt:  EQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREI---TRAVRETAG

Query:  ERRLCVVAEVDGVELS--WR-------------RVEREVVEQ---DQDQDRTDENDEKSE------ICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWL
        +  + VVA VD V  S  WR                REVVE+      + R ++ +EK E       CSICLDE+     + I   CGHV+H+ CI+ WL
Subjt:  ERRLCVVAEVDGVELS--WR-------------RVEREVVEQ---DQDQDRTDENDEKSE------ICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWL

Query:  IHNTSCPLCRAPLEL
         ++ SCPLCR    L
Subjt:  IHNTSCPLCRAPLEL

XP_023539471.1 uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo]3.4e-1628.45Show/hide
Query:  KCHTHSVVSGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITR
        +C+ H     + P+Q + +R++  TRL+ G P + Y   I+ ET      PT       PLP+   E DP   +  +   LSS ++ AT    I R I  
Subjt:  KCHTHSVVSGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITR

Query:  AVRETA---GERRLCVVAEVDGVELSWR-----RVEREVVEQDQDQDRTDENDEKSEI----------------------------------CSICLDEL
         V + A    E    +VAE+D +++ W        E E  E++ +++  DE +E+ E+                                  CS+C DE+
Subjt:  AVRETA---GERRLCVVAEVDGVELSWR-----RVEREVVEQDQDQDRTDENDEKSEI----------------------------------CSICLDEL

Query:  NNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLE
         +G  +   + CGHV+H  C+  WL  N SCPLCR  LE
Subjt:  NNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLE

TrEMBL top hitse value%identityAlignment
A0A1S4DUZ4 E3 ubiquitin-protein ligase RNF181-like4.9e-1329.03Show/hide
Query:  SGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITRAVRETA--
        SG   N  +++R+  + +++   P T    QIL +T        P    ++ L +   ++ P  +   + + LSSL+I   AS+ + R+I   + +    
Subjt:  SGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITRAVRETA--

Query:  -GERRLCVVAEVDGVELSWRRVE--------REVVEQDQ--------------DQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWL
         G+R   ++AEVD + + W  +E         E V  D+              ++ +++E  E    CSICLDEL+  K + I + CGHV+H+ CI+ WL
Subjt:  -GERRLCVVAEVDGVELSWRRVE--------REVVEQDQ--------------DQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWL

Query:  IHNTSCPLCRAPLELED
         ++ SCPLCR PL L++
Subjt:  IHNTSCPLCRAPLELED

A0A5D3E1S5 E3 ubiquitin-protein ligase RNF181-like protein4.9e-1329.03Show/hide
Query:  SGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITRAVRETA--
        SG   N  +++R+  + +++   P T    QIL +T        P    ++ L +   ++ P  +   + + LSSL+I   AS+ + R+I   + +    
Subjt:  SGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITRAVRETA--

Query:  -GERRLCVVAEVDGVELSWRRVE--------REVVEQDQ--------------DQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWL
         G+R   ++AEVD + + W  +E         E V  D+              ++ +++E  E    CSICLDEL+  K + I + CGHV+H+ CI+ WL
Subjt:  -GERRLCVVAEVDGVELSWRRVE--------REVVEQDQ--------------DQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWL

Query:  IHNTSCPLCRAPLELED
         ++ SCPLCR PL L++
Subjt:  IHNTSCPLCRAPLELED

A0A6J1DBR5 E3 ubiquitin-protein ligase RNF181-like2.4e-1534.12Show/hide
Query:  HTHSVVSGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITRAV
        H   V SG+QP+Q + +RL+  +R++   P+      IL+ET++     TP    V PLP+          E  + +LL SL +   A E+I R+I   V
Subjt:  HTHSVVSGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITRAV

Query:  RETAG----ERRLCVVAEVDGVELSWRRVEREVVEQDQ------------DQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHN
         E AG    +  L VVA VD +E      E  +V ++              +++ +E  E  + CS+CL+E+N G  + I + CGHV+H+ CI +WL  N
Subjt:  RETAG----ERRLCVVAEVDGVELSWRRVEREVVEQDQ------------DQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHN

Query:  TSCPLCRAPLE
         SCPLCR  LE
Subjt:  TSCPLCRAPLE

A0A6J1FXN0 RING-H2 finger protein ATL16-like8.9e-1533.95Show/hide
Query:  EQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREI---TRAVRETAG
        EQ    ++++++ Y RL+ G      + QI+ ET      P P   ++ PLP +    DP   +I +A +L SL+I A ASE+I  +I   T  + E   
Subjt:  EQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREI---TRAVRETAG

Query:  ERRLCVVAEVDGVELS--WR------------RVE-REVVEQ---------DQDQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWL
        +  + VVA VD V  S  WR             VE REVVE+          +  +  +E +E    CSICLDE+     + I   CGHV+H+ CI+ WL
Subjt:  ERRLCVVAEVDGVELS--WR------------RVE-REVVEQ---------DQDQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWL

Query:  IHNTSCPLCRAPLEL
         ++ SCPLCR    L
Subjt:  IHNTSCPLCRAPLEL

A0A6J1J8T7 RING-H2 finger protein ATL16-like3.1e-1533.95Show/hide
Query:  EQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREI---TRAVRETAG
        EQ    ++++++ Y RL+ G      + QI+ ET      P P   ++ PLP +    DP   +I +A +L SL+I A ASE+I  +I   T  + E   
Subjt:  EQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREI---TRAVRETAG

Query:  ERRLCVVAEVDGVELS--WR-------------RVEREVVEQ---DQDQDRTDENDEKSE------ICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWL
        +  + VVA VD V  S  WR                REVVE+      + R ++ +EK E       CSICLDE+     + I   CGHV+H+ CI+ WL
Subjt:  ERRLCVVAEVDGVELS--WR-------------RVEREVVEQ---DQDQDRTDENDEKSE------ICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWL

Query:  IHNTSCPLCRAPLEL
         ++ SCPLCR    L
Subjt:  IHNTSCPLCRAPLEL

SwissProt top hitse value%identityAlignment
O22255 RING-H2 finger protein ATL641.9e-0642.31Show/hide
Query:  EKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLE
        E+ E CS+CL E        +   CGH FH  CI  W    ++CPLCRAP++
Subjt:  EKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLE

P93823 RING-H2 finger protein ATL12.5e-0638.89Show/hide
Query:  EREVVEQDQDQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLELE
        +R+VV  ++DQ +       S+ CS+CL+E    +   I   C HVFH  CI  WL  N +CPLCR  +  E
Subjt:  EREVVEQDQDQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLELE

Q8L9W3 E3 ubiquitin-protein ligase ATL235.1e-0740Show/hide
Query:  KSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPL
        +S  C++CL+++ +G+   +  GC H FH  C   WL ++T CP+CRA L
Subjt:  KSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPL

Q9LZJ6 RING-H2 finger protein ATL53.9e-0746.94Show/hide
Query:  EICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLE
        E CS+CL E        +   CGHVFH  CI  W    +SCPLCRAP++
Subjt:  EICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLE

Q9ZV51 RING-H2 finger protein ATL561.0e-0743.75Show/hide
Query:  CSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLEL
        C +C D    G+W     GCGHVFH  C+  WL+  ++CP+CRA + L
Subjt:  CSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLEL

Arabidopsis top hitse value%identityAlignment
AT1G57730.1 RING/U-box superfamily protein1.9e-0940.62Show/hide
Query:  QDRTDENDEKSEICSICLDELNNGKWDEIDV-GCGHVFHDFCIYNWLIHNTSCPLCRAPLELED
        ++ T  +  +++ C+ICL++++    D  ++  C HVFH+ CIY WL H+  CPLCR  LE ED
Subjt:  QDRTDENDEKSEICSICLDELNNGKWDEIDV-GCGHVFHDFCIYNWLIHNTSCPLCRAPLELED

AT2G18670.1 RING/U-box superfamily protein7.2e-0943.75Show/hide
Query:  CSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLEL
        C +C D    G+W     GCGHVFH  C+  WL+  ++CP+CRA + L
Subjt:  CSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLEL

AT3G62690.1 AtL52.8e-0846.94Show/hide
Query:  EICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLE
        E CS+CL E        +   CGHVFH  CI  W    +SCPLCRAP++
Subjt:  EICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLE

AT5G37250.1 RING/U-box superfamily protein3.6e-0828.57Show/hide
Query:  HVYEADPAQFEIDLARLLSSLHICATASEMIVREITRAVRETAGERRLCVVAEVDGVELSWRRVER-EVVEQDQDQDRTDENDEKSEICSICLDELNNGK
        H+Y+        DL   ++    C   SE IV +     +  +    + V  +V    ++ R  +  + + ++Q  + TD  DE+   CSICL++ +   
Subjt:  HVYEADPAQFEIDLARLLSSLHICATASEMIVREITRAVRETAGERRLCVVAEVDGVELSWRRVER-EVVEQDQDQDRTDENDEKSEICSICLDELNNGK

Query:  WDEIDV--GCGHVFHDFCIYNWLIHNTSCPLCR
         D I +   C H+FH  CI+ WL    SCPLCR
Subjt:  WDEIDV--GCGHVFHDFCIYNWLIHNTSCPLCR

AT5G42200.1 RING/U-box superfamily protein3.6e-0840Show/hide
Query:  KSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPL
        +S  C++CL+++ +G+   +  GC H FH  C   WL ++T CP+CRA L
Subjt:  KSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGTTTACACTCTCGTTGATCAAGTGTCATACCCACAGCGTGGTTTCGGGCGAGCAACCAAACCAAGCCGTGGACCTCCGATTGCAACGTTACACCCGTCTGGT
CCCGGGACCTCCATCGACTGCTTACATACAGCAAATCCTCGAAGAAACCACATTCGCACTCGATCAGCCGACTCCAACGACTACGAACGTGATCCCTCTCCCCATGCACG
TATACGAAGCGGATCCAGCACAATTTGAAATCGACCTAGCGCGGTTGCTATCCAGCCTCCACATCTGTGCGACAGCAAGCGAGATGATCGTGCGGGAGATCACGAGGGCC
GTGAGGGAGACGGCGGGGGAGAGGAGGTTGTGCGTGGTGGCGGAAGTGGACGGCGTGGAACTGAGTTGGAGGAGGGTGGAAAGGGAGGTTGTGGAACAAGATCAAGATCA
AGATCGGACGGATGAGAATGATGAGAAATCTGAAATTTGTAGTATTTGTTTGGATGAATTGAATAATGGAAAATGGGATGAGATTGATGTGGGATGCGGGCATGTGTTTC
ATGACTTTTGTATTTATAACTGGTTGATCCATAACACTTCATGTCCTTTGTGTAGAGCCCCTTTGGAGTTGGAAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGTTTACACTCTCGTTGATCAAGTGTCATACCCACAGCGTGGTTTCGGGCGAGCAACCAAACCAAGCCGTGGACCTCCGATTGCAACGTTACACCCGTCTGGT
CCCGGGACCTCCATCGACTGCTTACATACAGCAAATCCTCGAAGAAACCACATTCGCACTCGATCAGCCGACTCCAACGACTACGAACGTGATCCCTCTCCCCATGCACG
TATACGAAGCGGATCCAGCACAATTTGAAATCGACCTAGCGCGGTTGCTATCCAGCCTCCACATCTGTGCGACAGCAAGCGAGATGATCGTGCGGGAGATCACGAGGGCC
GTGAGGGAGACGGCGGGGGAGAGGAGGTTGTGCGTGGTGGCGGAAGTGGACGGCGTGGAACTGAGTTGGAGGAGGGTGGAAAGGGAGGTTGTGGAACAAGATCAAGATCA
AGATCGGACGGATGAGAATGATGAGAAATCTGAAATTTGTAGTATTTGTTTGGATGAATTGAATAATGGAAAATGGGATGAGATTGATGTGGGATGCGGGCATGTGTTTC
ATGACTTTTGTATTTATAACTGGTTGATCCATAACACTTCATGTCCTTTGTGTAGAGCCCCTTTGGAGTTGGAAGACTGA
Protein sequenceShow/hide protein sequence
MVVFTLSLIKCHTHSVVSGEQPNQAVDLRLQRYTRLVPGPPSTAYIQQILEETTFALDQPTPTTTNVIPLPMHVYEADPAQFEIDLARLLSSLHICATASEMIVREITRA
VRETAGERRLCVVAEVDGVELSWRRVEREVVEQDQDQDRTDENDEKSEICSICLDELNNGKWDEIDVGCGHVFHDFCIYNWLIHNTSCPLCRAPLELED