; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000285 (gene) of Chayote v1 genome

Gene IDSed0000285
OrganismSechium edule (Chayote v1)
DescriptionTranscription termination factor like
Genome locationLG04:38435246..38435500
RNA-Seq ExpressionSed0000285
SyntenySed0000285
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581607.1 hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1969.77Show/hide
Query:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELS-------PSSVRRGRSD
        ++ D   + +KIAMFV VQVLVY ILSKSSNLFS D+KL+S SFKPARSVSIRR LAA+SD+PPGGELS       PSSVRR RSD
Subjt:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELS-------PSSVRRGRSD

KAG6606858.1 hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2181.94Show/hide
Query:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSS
        ++ DAGE  VKIAMF+LVQ+LVYFILS+SS+LFSKD+KLKS SFKPARSVSIRRFLAA+SDMP GGELSPSS
Subjt:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSS

XP_008461750.1 PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]7.2e-2683.33Show/hide
Query:  DSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSSVRRGRSD
        ++DAGEM V+IAMFV VQ+LVY ILSKSSNLFS D+KL+S SFKPARSVSIRRFLAA+SD+PPGGELSPSSVRRGRSD
Subjt:  DSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSSVRRGRSD

XP_011651805.2 uncharacterized protein LOC105434941 [Cucumis sativus]1.6e-2272.94Show/hide
Query:  DSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELS-------PSSVRRGRSD
        D+DAGEM V+IAMFV +Q+LVY ILSKSSNLFS D+K++S SFKPARSVSIRRFLAA+SD+PPGGELS       PSS RR RSD
Subjt:  DSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELS-------PSSVRRGRSD

XP_038905322.1 uncharacterized protein LOC120091388 [Benincasa hispida]2.0e-2069.77Show/hide
Query:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELS-------PSSVRRGRSD
        ++SD  EM VKIAMF  VQ+LVY ILSKSSNLFS D+KL+S SFKPARSVSIRRFLAA+SD+PPGGE+S       PSS RR  SD
Subjt:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELS-------PSSVRRGRSD

TrEMBL top hitse value%identityAlignment
A0A1S3CFW1 uncharacterized protein LOC1035002813.5e-2683.33Show/hide
Query:  DSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSSVRRGRSD
        ++DAGEM V+IAMFV VQ+LVY ILSKSSNLFS D+KL+S SFKPARSVSIRRFLAA+SD+PPGGELSPSSVRRGRSD
Subjt:  DSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSSVRRGRSD

A0A2K3LZF6 Uncharacterized protein3.2e-1671.23Show/hide
Query:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSSV
        MDS  G+MLVK+AMF LVQ LVY ILS SSN+FSKD K +S SFKPARSVSIRR LA +SD PP GE SPS++
Subjt:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSSV

A0A5A7UC63 Uncharacterized protein3.5e-2683.33Show/hide
Query:  DSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSSVRRGRSD
        ++DAGEM V+IAMFV VQ+LVY ILSKSSNLFS D+KL+S SFKPARSVSIRRFLAA+SD+PPGGELSPSSVRRGRSD
Subjt:  DSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSSVRRGRSD

U5G004 Uncharacterized protein3.2e-1666.67Show/hide
Query:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSS
        M+S  G++L+K+AMFV+VQ LVY ILSKSSN+FSK    +S SFK ARSVSIRR LA + D+PPGGELSP+S
Subjt:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSS

U7DUH6 Uncharacterized protein3.2e-1666.67Show/hide
Query:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSS
        M+S  G++L+K+AMFV+VQ LVY ILSKSSN+FSK    +S SFK ARSVSIRR LA + D+PPGGELSP+S
Subjt:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein6.7e-1452.7Show/hide
Query:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLK-SPSFKPARSVSIRRFLAAISDMPPGGELSPSSV
        M+     ML+K+++F L+Q LVY ILSKSS++FS  + +K + SF+ ARS+SIRR LA + DMP GGE+SPS++
Subjt:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLK-SPSFKPARSVSIRRFLAAISDMPPGGELSPSSV

AT2G31945.1 unknown protein4.6e-1553.66Show/hide
Query:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLK-SPSFKPARSVSIRRFLAAISDMPPGGELSPSSVRRGRSDHD
        MD   G ML+K+A+F LVQ LVY IL KSS +F++   LK + SF+P RSVSIRR LAA+ D+P G ++SPSS     S  D
Subjt:  MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLK-SPSFKPARSVSIRRFLAAISDMPPGGELSPSSVRRGRSDHD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCGACGCCGGCGAAATGCTGGTCAAAATCGCCATGTTCGTGTTGGTTCAAGTTCTTGTGTATTTCATCCTCTCCAAATCCTCCAATCTCTTCTCCAAGGACGA
GAAATTGAAATCTCCCAGCTTCAAACCGGCCAGATCCGTCAGTATTCGCCGATTTCTCGCCGCTATTTCCGATATGCCGCCCGGCGGCGAGCTTTCGCCGTCGTCGGTTC
GCCGGGGACGCTCCGATCACGACGCTACCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCCGACGCCGGCGAAATGCTGGTCAAAATCGCCATGTTCGTGTTGGTTCAAGTTCTTGTGTATTTCATCCTCTCCAAATCCTCCAATCTCTTCTCCAAGGACGA
GAAATTGAAATCTCCCAGCTTCAAACCGGCCAGATCCGTCAGTATTCGCCGATTTCTCGCCGCTATTTCCGATATGCCGCCCGGCGGCGAGCTTTCGCCGTCGTCGGTTC
GCCGGGGACGCTCCGATCACGACGCTACCTCTTAG
Protein sequenceShow/hide protein sequence
MDSDAGEMLVKIAMFVLVQVLVYFILSKSSNLFSKDEKLKSPSFKPARSVSIRRFLAAISDMPPGGELSPSSVRRGRSDHDATS