; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000346 (gene) of Chayote v1 genome

Gene IDSed0000346
OrganismSechium edule (Chayote v1)
Descriptionhistone deacetylase 6
Genome locationLG13:3065241..3067336
RNA-Seq ExpressionSed0000346
SyntenySed0000346
Gene Ontology termsGO:0009958 - positive gravitropism (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001607 - Zinc finger, UBP-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600290.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]3.5e-6584.03Show/hide
Query:  MAKEAGSSSSNPLPLILEEEV----LYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLA
        MA EAGSSSSNP P ++EEEV    LYGAESGWVEA  SCDHL SL SDLAHIP PD+ACC+C+NPKENWLCLCCKNVFCSRFVNKHML+HY QS HSLA
Subjt:  MAKEAGSSSSNPLPLILEEEV----LYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR
        LSYSDLSVWCFSCDAYLDAQ+IQELR VHEVAYILKFGEAPP R
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR

KAG7030950.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. argyrosperma]8.0e-6274.69Show/hide
Query:  MAKEAGSSSSNPLPLILEEEV----LYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQ------------------CQNPKENWLCLCCKNVFCSR
        MA EAGSSSSNP P ++EEEV    LYGAESGWVEA  SCDHL SL SDLAHIP PD+ACC+                  C+NPKENWLCLCCKNVFCSR
Subjt:  MAKEAGSSSSNPLPLILEEEV----LYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQ------------------CQNPKENWLCLCCKNVFCSR

Query:  FVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR
        FVNKHML+HY QS HSLALSYSDLSVWCFSCDAYLDAQ+IQELR VHEVAYILKFGEAPP R
Subjt:  FVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR

XP_008454385.1 PREDICTED: histone deacetylase 6 [Cucumis melo]1.4e-6181.76Show/hide
Query:  MAKEAGSSS--SNPLPLIL------EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQST
        MA+EAGSSS  SN LPLI+      EEE+LYGA SGWV+A  SCDHLASLSSDLAHIP P + C QCQNPKENWLCLCCK+VFCSRFVNKHML+HY QST
Subjt:  MAKEAGSSS--SNPLPLIL------EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQST

Query:  HSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR
        H LALSYSDLSVWCFSCDAYLDAQVIQELR VHEVAYILKFGEAPP R
Subjt:  HSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR

XP_022149228.1 histone deacetylase 6 [Momordica charantia]6.1e-6281.38Show/hide
Query:  MAKEAGSSSSNPLPLILE---EEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLAL
        MA EAGSSSSN  P I+E   EE L+GAE+GWVEA   CDHLASLSSDLAHIP PD+AC +CQNPKENWLCLCCKN+ CSRFVNKHML+HY QSTH LAL
Subjt:  MAKEAGSSSSNPLPLILE---EEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLAL

Query:  SYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLRLC
        SYSDLSVWCFSCDAYLDAQVIQELR V+EVAYILKFGEAPP R C
Subjt:  SYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLRLC

XP_038904979.1 histone deacetylase 6 [Benincasa hispida]2.5e-6385.42Show/hide
Query:  MAKEAGSSSSNPLPLILEEEV----LYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLA
        MAKEAGSSSSNPLPLILEEEV    LYGAESGWVEA  SCDHLA LS DLAHIP PD  C +CQNPKENWLCL CK+VFCSRFVNKHML+HY Q TH LA
Subjt:  MAKEAGSSSSNPLPLILEEEV----LYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR
        LSYSDLSVWCFSCDAYLDAQVIQELR VHEVAYILKFGEAPP R
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR

TrEMBL top hitse value%identityAlignment
A0A0A0KT14 UBP-type domain-containing protein2.5e-6181.51Show/hide
Query:  MAKEAGSSS--SNPLPLIL----EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHS
        MA++AGSSS  SNPL LI+    EEE+LYGA SGWV+A  SCDHLASLSSDLAHIP P + C QCQNPKENW+CLCCK+VFCSRFVNKHML+HY QSTH 
Subjt:  MAKEAGSSS--SNPLPLIL----EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHS

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR
        LALSYSDLSVWCFSCDAYLDAQVIQELR VHEVAYILKFGEAPP R
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR

A0A1S3BZ94 histone deacetylase 66.6e-6281.76Show/hide
Query:  MAKEAGSSS--SNPLPLIL------EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQST
        MA+EAGSSS  SN LPLI+      EEE+LYGA SGWV+A  SCDHLASLSSDLAHIP P + C QCQNPKENWLCLCCK+VFCSRFVNKHML+HY QST
Subjt:  MAKEAGSSS--SNPLPLIL------EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQST

Query:  HSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR
        H LALSYSDLSVWCFSCDAYLDAQVIQELR VHEVAYILKFGEAPP R
Subjt:  HSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR

A0A5A7TNA2 Histone deacetylase 61.9e-6181.08Show/hide
Query:  MAKEAGSSS--SNPLPLIL------EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQST
        MA+EAGSSS  SN LPLI+      EEE+LYGA SGWV+A  SCDHLASLSSDLAHIP P + C QCQNPKENWLCLCCK+VFCSRFVNKHML+HY QST
Subjt:  MAKEAGSSS--SNPLPLIL------EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQST

Query:  HSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR
        H LALSYSDLSVWCFSCDAYLDAQVIQELR VHEVAYILKFGE PP R
Subjt:  HSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR

A0A6J1D695 histone deacetylase 63.0e-6281.38Show/hide
Query:  MAKEAGSSSSNPLPLILE---EEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLAL
        MA EAGSSSSN  P I+E   EE L+GAE+GWVEA   CDHLASLSSDLAHIP PD+AC +CQNPKENWLCLCCKN+ CSRFVNKHML+HY QSTH LAL
Subjt:  MAKEAGSSSSNPLPLILE---EEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLAL

Query:  SYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLRLC
        SYSDLSVWCFSCDAYLDAQVIQELR V+EVAYILKFGEAPP R C
Subjt:  SYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLRLC

A0A6J1FUZ8 BTB/POZ domain-containing protein NPY2-like isoform X22.0e-5878.17Show/hide
Query:  AKEAGSSSSNPLP---LILEEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALS
        A  +  SS+  LP     L +E LYGAESGWVEA  SCDHL SL SDLAHIP PD+ACC+C+NPKENWLCLCCKNVFCSRFVNKHML+HY QS HSLALS
Subjt:  AKEAGSSSSNPLP---LILEEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALS

Query:  YSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR
        YSDLSVWCFSCDAYLDAQ+IQELR VHEVAYILKFGE PP R
Subjt:  YSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR

SwissProt top hitse value%identityAlignment
Q20296 Histone deacetylase 61.0e-1435.04Show/hide
Query:  AKEAGSSSSNPLPLILEEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSD
        +  +GSSSS+  P     E++    +  V    +C HL  +           +AC +CQ   E W CL C    C RFVN+H + H+  S+H +ALS +D
Subjt:  AKEAGSSSSNPLPLILEEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSD

Query:  LSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPP
        LSVWC+ CD+Y+    +   +S    A+  KFGE  P
Subjt:  LSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPP

Q54QE6 NAD-dependent deacetylase sir2A1.9e-1044.83Show/hide
Query:  CCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYL
        C  C +  ENW+C+ C  V CSR VN H  EH+  + H ++ S+SD S WC++CD Y+
Subjt:  CCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYL

Q9H0E7 Ubiquitin carboxyl-terminal hydrolase 446.3e-0930.86Show/hide
Query:  SCDHLA--SLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYL
        +C H+    L+ D + +      C  C   +  W CL C +V C R++ +H L+H+ +S+H +AL  +++ V+C+ CD Y+
Subjt:  SCDHLA--SLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYL

Q9UBN7 Histone deacetylase 63.1e-1639.81Show/hide
Query:  CDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGE
        C HL ++    A        C  C   +ENW+CL C  V+C R++N HML+H+  S H L LSY DLS WC+ C AY+  Q + ++++   +A+  KFGE
Subjt:  CDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGE

Query:  APP
          P
Subjt:  APP

Q9Z2V5 Histone deacetylase 65.8e-1540.78Show/hide
Query:  CDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGE
        C HL ++    A        C  C   +ENW+CL C  V+CSR+VN HM+ H+  S H L LS  DLS WC+ C AY+     ++L+ V   A+  KFGE
Subjt:  CDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGE

Query:  APP
          P
Subjt:  APP

Arabidopsis top hitse value%identityAlignment
AT2G14830.1 Regulator of Vps4 activity in the MVB pathway protein4.9e-0951.67Show/hide
Query:  MAKEA--GSSSSNPLPLILEE--EVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSAC
        MA++A   SSSS+P   + +E  + + GA SGWVEAR +CDHL +LS DL H+P PD+ C
Subjt:  MAKEA--GSSSSNPLPLILEE--EVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSAC

AT2G14830.2 Regulator of Vps4 activity in the MVB pathway protein6.8e-5165.03Show/hide
Query:  MAKEA--GSSSSNPLPLILEE--EVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLA
        MA++A   SSSS+P   + +E  + + GA SGWVEAR +CDHL +LS DL H+P PD+ C +CQNP ENWLCLCCK V CSRFVN+HML H+ Q+ H LA
Subjt:  MAKEA--GSSSSNPLPLILEE--EVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPL
        LSYSDLSVWCF C+AYLDAQ+I +LR +H+ AYILKFGEAPPL
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPL

AT2G26000.1 zinc finger (C3HC4-type RING finger) family protein1.1e-0531.15Show/hide
Query:  DSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYL
        +S CC CQ  +  W+C+ C  V C R+   H   H+ ++ H  +L      VW ++ D Y+
Subjt:  DSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYL

AT2G26000.2 zinc finger (C3HC4-type RING finger) family protein1.1e-0531.15Show/hide
Query:  DSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYL
        +S CC CQ  +  W+C+ C  V C R+   H   H+ ++ H  +L      VW ++ D Y+
Subjt:  DSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAAGAAGCCGGCTCCTCCTCTTCCAACCCACTGCCACTCATTCTCGAAGAAGAAGTCTTATACGGCGCCGAATCTGGATGGGTCGAAGCCCGGATTTCTTGCGA
TCATCTCGCCTCGCTATCTTCTGACCTTGCTCACATTCCTGCCCCTGATTCTGCCTGCTGCCAATGTCAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATG
TTTTCTGTAGCCGTTTTGTGAACAAGCACATGCTTGAACATTATCATCAATCAACTCATAGCCTAGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGAC
GCATACTTAGATGCACAAGTGATTCAGGAATTACGATCAGTACATGAAGTTGCCTACATACTGAAATTTGGCGAGGCGCCACCATTACGATTATGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAAGAAGCCGGCTCCTCCTCTTCCAACCCACTGCCACTCATTCTCGAAGAAGAAGTCTTATACGGCGCCGAATCTGGATGGGTCGAAGCCCGGATTTCTTGCGA
TCATCTCGCCTCGCTATCTTCTGACCTTGCTCACATTCCTGCCCCTGATTCTGCCTGCTGCCAATGTCAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATG
TTTTCTGTAGCCGTTTTGTGAACAAGCACATGCTTGAACATTATCATCAATCAACTCATAGCCTAGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGAC
GCATACTTAGATGCACAAGTGATTCAGGAATTACGATCAGTACATGAAGTTGCCTACATACTGAAATTTGGCGAGGCGCCACCATTACGATTATGTTAA
Protein sequenceShow/hide protein sequence
MAKEAGSSSSNPLPLILEEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCD
AYLDAQVIQELRSVHEVAYILKFGEAPPLRLC