; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0000372 (gene) of Chayote v1 genome

Gene IDSed0000372
OrganismSechium edule (Chayote v1)
Descriptionexosome complex component RRP41 homolog
Genome locationLG04:46099306..46103853
RNA-Seq ExpressionSed0000372
SyntenySed0000372
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0004527 - exonuclease activity (molecular function)
GO:0009022 - tRNA nucleotidyltransferase activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3964871.1 hypothetical protein CMV_010887 [Castanea mollissima]1.3e-12393.75Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQN++QQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRG
        LPIDIFENVMQLAIEGCKA+ANYIRE+MLENTK+LEYRRG
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRG

XP_022157614.1 exosome complex component RRP41 homolog [Momordica charantia]6.6e-12595.44Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIGAVSKADGSA+FEMGNTKV+AAVYGPREVQN+SQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCS+GYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA
        LPIDIFENVMQLAIEGCKAVA+YIREVMLENTKKLEY+RGA
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA

XP_022941604.1 exosome complex component RRP41 homolog [Cucurbita moschata]2.1e-12697.1Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCS+GYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA
        LP+DIFENVMQLAIEGCKAVANYIREVMLE+TKKLEY RGA
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA

XP_030944786.1 exosome complex component RRP41 homolog [Quercus lobata]1.3e-12393.75Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQN++QQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRG
        LPIDIFENVMQLAIEGCKA+ANYIRE+MLENTK+LEYRRG
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRG

XP_038891797.1 exosome complex component RRP41 homolog [Benincasa hispida]1.9e-12495.82Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCS+GYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRR
        LPID+FENVMQLAIEGCKA+A+YIREVML+NTK+LEY R
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRR

TrEMBL top hitse value%identityAlignment
A0A5B6YT64 Putative exosome complex component RRP41 (Fragment)8.7e-12393.33Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ME+VSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQN+SQQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPDVTVG LPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRG
        LP+DIFENVMQLAIEGCKAVANYIREV+LENTK+LEYRRG
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRG

A0A6J1DWZ5 exosome complex component RRP41 homolog3.2e-12595.44Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIGAVSKADGSA+FEMGNTKV+AAVYGPREVQN+SQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCS+GYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA
        LPIDIFENVMQLAIEGCKAVA+YIREVMLENTKKLEY+RGA
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA

A0A6J1FNX1 exosome complex component RRP41 homolog1.0e-12697.1Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCS+GYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA
        LP+DIFENVMQLAIEGCKAVANYIREVMLE+TKKLEY RGA
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA

A0A6J1JKC7 exosome complex component RRP41 homolog1.0e-12697.1Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCS+GYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA
        LP+DIFENVMQLAIEGCKAVANYIREVMLE+TKKLEY RGA
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA

A0A7N2MX64 Uncharacterized protein6.1e-12493.75Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQN++QQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRG
        LPIDIFENVMQLAIEGCKA+ANYIRE+MLENTK+LEYRRG
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRG

SwissProt top hitse value%identityAlignment
Q5JIR6 Exosome complex component Rrp414.4e-5548.51Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ++ +   G R+DGR+  E+R I+ E+G +  ADGSA  E G  KVLAAVYGPRE+  K  Q  ++A++R  Y MA FS  +R +KP  DRRS EIS VIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
          +E  +L H+ PR+ ID+F+++LQAD GTR A I AA+LALADAGIPM+D+V +C++G ++   +LDLN  ED+ G  DV V  +P  + +TLLQMD  
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKL
        L  D F   ++LAI+G KAV    RE + E   K+
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKL

Q7YRA3 Exosome complex component RRP417.5e-6350.21Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ ++++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CS+G+++ T L DL++VE++AGGP + +  LP   ++ LL+MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKK
        +L  D  E V++ A    + V   +  V+ ++ ++
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKK

Q921I9 Exosome complex component RRP412.6e-6349.38Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ ++S+ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CS+G+++ T L DL++VE++AGGP + +  LP   ++ LL+MD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRG
        +L  D  E V++ A +  + V   +  V+ ++ ++     G
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRG

Q9NPD3 Exosome complex component RRP412.6e-6350.21Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ ++++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CS+G+++ T L DL++VE++AGGP + +  LP   ++ LL+MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKK
        +L  D  E V++ A +  + V   +  V+ ++ ++
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKK

Q9SP08 Exosome complex component RRP41 homolog4.3e-10380.17Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QNKSQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCS+GYLNSTPLLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA
        KLP++ FE V  LA EGCKA+A  IREV+ ENTK+LEYRR A
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein6.6e-1429.79Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R DGR P ++R +      + +  GSA +  G+TKVLAAVYGP+    K++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSSGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+ T+  LP+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSSGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein6.6e-1429.79Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R DGR P ++R +      + +  GSA +  G+TKVLAAVYGP+    K++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSSGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+ T+  LP+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSSGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK

AT3G61620.1 3'-5'-exoribonuclease family protein3.1e-10480.17Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QNKSQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCS+GYLNSTPLLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA
        KLP++ FE V  LA EGCKA+A  IREV+ ENTK+LEYRR A
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA

AT3G61620.2 3'-5'-exoribonuclease family protein3.1e-10480.17Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QNKSQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCS+GYLNSTPLLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA
        KLP++ FE V  LA EGCKA+A  IREV+ ENTK+LEYRR A
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYRRGA

AT4G27490.1 3'-5'-exoribonuclease family protein7.3e-2128.38Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT
        R DGR   + R    + GAVS A GSA  E GNTKV+ +V+GPRE   K+   S+   + C  +  NF++    +         E S ++ + +E  I+ 
Subjt:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT

Query:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDIFENV
           P++ +D+F  VL++ G   S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P   ++T L +  +         
Subjt:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDIFENV

Query:  MQLAIEGCKAVANYIREVMLEN
        MQL ++    +   +R+ + ++
Subjt:  MQLAIEGCKAVANYIREVMLEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTGTGAGCCCCGAAGGCCTTCGCTTAGATGGTCGCCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCTGATGGTTCTGCTAT
TTTTGAGATGGGTAACACCAAGGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAAAATAAGAGTCAACAAATGAGCAACCAAGCGCTGGTGCGTTGTGAGTATACCA
TGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGCGATCCACGGAGATCTCTTTAGTTATTCGACAGACAATGGAGGAATGCATTCTAACACAT
TTAATGCCTAGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACGAGATCAGCATGTATAAACGCTGCAACTTTGGCGCTGGCTGATGCTGGAAT
TCCCATGCGAGATATCGTTACCTCATGCAGTTCTGGATACCTTAATAGCACTCCTCTTCTTGATTTGAATTATGTAGAGGATAGTGCTGGTGGCCCTGATGTGACTGTAG
GCTTTCTACCTAAGTTGGATAAAGTCACTCTTCTTCAGATGGATGCTAAATTACCTATTGATATATTCGAGAATGTCATGCAACTAGCAATTGAGGGCTGCAAAGCCGTA
GCTAATTACATTCGAGAAGTAATGTTAGAGAATACCAAAAAACTCGAATATCGCCGTGGAGCATAG
mRNA sequenceShow/hide mRNA sequence
GAAAAACACCCTTTCATTAGTTTTCTAGCAGAGTTGGCAAAACCTGTGCCGCCGTACCACTTCCCCTTCAGTCCTAACCTCGCCGCCGTCATCCCTCGCTCCGACCACCG
AAACCTCGCAGCTGCCGCCGCCGCCGCCTCCTTCCGGTAAAACCAAAAACGAGTTCCACAACTAACCTAACCCTACATCTTTCCACTTCGCCGTGTTTCACAAACCATGG
AGTTTGTGAGCCCCGAAGGCCTTCGCTTAGATGGTCGCCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCTGATGGTTCTGCTATTTTT
GAGATGGGTAACACCAAGGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAAAATAAGAGTCAACAAATGAGCAACCAAGCGCTGGTGCGTTGTGAGTATACCATGGC
TAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGCGATCCACGGAGATCTCTTTAGTTATTCGACAGACAATGGAGGAATGCATTCTAACACATTTAA
TGCCTAGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACGAGATCAGCATGTATAAACGCTGCAACTTTGGCGCTGGCTGATGCTGGAATTCCC
ATGCGAGATATCGTTACCTCATGCAGTTCTGGATACCTTAATAGCACTCCTCTTCTTGATTTGAATTATGTAGAGGATAGTGCTGGTGGCCCTGATGTGACTGTAGGCTT
TCTACCTAAGTTGGATAAAGTCACTCTTCTTCAGATGGATGCTAAATTACCTATTGATATATTCGAGAATGTCATGCAACTAGCAATTGAGGGCTGCAAAGCCGTAGCTA
ATTACATTCGAGAAGTAATGTTAGAGAATACCAAAAAACTCGAATATCGCCGTGGAGCATAGCTGAAAGCGGTTTTCGGGGATTCTTACACAAAGGAAGGAGAAGTCAGT
TGCTTTTAACTTCTGTAATGGACTGGAGATGTTTTCAGAAAAGAATGTATGTCAGTTTTATTGTTTGTAGACTTATCAGACAGTTCATTTAACAAATTTTGCATTAAACC
CCAATCTTACTTGCATTAACAGTGGCCTATTGAAAAACAGTGGTTGTTTAGTTGAATTGCTGTAGTGGTTGAAGAATCACATGCATTGTATCCAAACTCTTCAACAATTA
TGTTAATTATGTTTATCTAAA
Protein sequenceShow/hide protein sequence
MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTH
LMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSSGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDIFENVMQLAIEGCKAV
ANYIREVMLENTKKLEYRRGA